A R T I C L E S
Carlos et al.
Table 1. Selected Bond Lengths (Å) and Angles (deg)
Electrochemical NO Detection. The release of NO in CH3CN was
monitored using an EG&G Princeton Applied Research model 264A
polarographic analyzer/stripping voltammeter in conjunction with a three
electrode cell. Differential pulse voltammograms were obtained in
CH3CN at 22 °C in a voltammetric cell with a glassy-carbon electrode
as the working electrode, a platinum wire as the auxiliary, and an SCE
reference electrode. Nitric oxide quantitative measurements were per-
formed using an NO sensor electrode from Innovative Instruments, Inc.,
a model amiNO700 electrode with an inNO Nitric Oxide Measuring
System.
Photochemistry. The complex was irradiated using the third
harmonic (355 nm) of an Nd:YAG 10 ns pulse width laser (Continuum
Surelite OPO IIP-10) attenuated to approximately 2 mJ/pulse as the
excitation source. The progress of the photoreaction was monitored
spectrophotometrically in a Hitachi model U2000 spectrophotometer.
The photolysis was performed at 25 °C in 1.0 cm path length quartz
cells capped with a rubber septum. The solutions (10-3-10-4 mol L-1
initial complex concentration) were deaerated by bubbling with argon
prior to photolysis and were stirred during irradiation. The solutions
were photolyzed to approximately 10% conversion. Dark reactions were
performed simultaneously using solutions of identical composition. As
analyzed from their UV-vis spectra, these samples were stable in the
dark in a time scale longer than that of the photochemical experiments.
Photoproducts were identified by comparing their UV-vis spectra with
the spectra of solvent-substituted ruthenium(II) phosphite complex16,17
trans-[Ru(NH3)4(H2O)P(OEt)3]2+. Compounds formed by dark reactions
were identified by NMR, EPR, and electrochemical (differential pulse
voltammetry and electrolysis) techniques.
31P NMR spectra were obtained using 5 mm vacuum NMR tubes
(Wilmad) in a Bruker DRX 400 9.4 T (161.9 MHz to 31P) spectrometer.
The sample (ca. 30 mg) was dissolved in the appropriate solvent, and
D2O served as a reference. The dearation of solutions was achieved
with 3-5 vacuum-argon cycles in a Schlenk line.
EPR measurements were taken using a quartz flat cell at room
temperature or 2 mm quartz tubes for 77 K (Wilmad) in a Bruker ESP
300E X-band spectrometer equipped with a TE102 standard cavity.
The experiment at 77 K was performed using a quartz Dewar filled
with liquid nitrogen.
Heme Proteins Nitrosylation. All of the sample solutions were
prepared in the vacuum line with meticulous care to avoid oxygen
contamination. A glass apparatus used for the present study consists
of a round-bottomed vessel (2 mL) connected to a quartz cell (1 cm
optical path length) fixed to a gas/vacuum manifold by a glass joint.
After the phosphate buffer (pH 7.4) solution of trans-[Ru(NH3)4(NO2)P-
(OEt)3]+ was degassed, the hemeprotein (hem) was introduced into the
round-bottom vessel, and the system was deaerated with four vacuum-
argon cycles. The absorption spectrum of the aqueous solutions of the
complex was measured and photolyzed with 355 nm light for 6 min.
When the irradiation was stopped, the hem was mixed, and the
subsequent thermal reaction was followed by changes in the UV-vis
absorption spectrum of the protein. Products were identified by
comparing their UV-vis spectra with the spectra of the (NO)FeII/III
hem adduct.22,23 The absorption spectrum of hem in the presence of
the complex was stable in the dark for long periods.
atoms
dist
atoms
angle
Ru-N5
Ru-N4
Ru-N2
Ru-N3
Ru-N1
Ru-P1
P1-O2
P1-O1
P1-O3
O1-C11
O2-C21
O51-N5
O3-C31
2.096(3)
2.141(2)
2.133(2)
2.141(2)
2.142(2)
2.217(1)
1.615(2)
1.614(2)
1.604(2)
1.452(4)
1.451(3)
1.251(3)
1.462(4)
N5-Ru-P1
N4-Ru-P1
N2-Ru-P1
N3-Ru-P1
N1-Ru-P1
O51-N5-O52
O51-N5-Ru
O52-N5-Ru
178.47(7)
93.08(7)
94.01(7)
95.01(7)
92.39(7)
117.7(2)
120.9(2)
121.4(2)
exchange-correlation functional24 known as B3LYP at the 6-31(d) level
of theory for H, C, N, O, and P, and 3-21 g(d) with LanL2DZ pseudo
potential25 for Ru. The analytical evaluation of the energy second
derivative matrix in Cartesian coordinates (Hessian matrix) at the same
level of approximation confirmed the nature of minima of the potential
surface points associated with the optimized structures.
Time-dependent density functional theory26-28 (TD-DFT) allowed
the computation of excitation energies, oscillator strengths, and
composition determinants. TD-DFT calculations were performed using
the B3LYP hybrid functional and the 6-31++G(d,p) basis set for H,
C, N, O, and P, and an effective core potential LanL2DZ for Ru. The
excited state compositions were described as a linear combination of
singly excited Slater determinants; their relative weights are represented
by the normalized squared coefficients in the linear combination.
Results and Discussion
Molecular Structure. Table 1 shows the selected interatomic
distances. The mean Ru-NH3 distance is determined as 2.14(4)
Å, which is in agreement with that (2.13 ( 0.01 Å) in trans-
[Ru(NH3)5NO2]Cl29 and that (2.10 ( 0.06 Å) in trans-[Ru(NH3)4-
(NO)(nic)](SiF6)3‚2H2O.12 The Ru-P distance [2.2171(8) Å]
is shorter than that (2.366 Å) in trans-[Ru(NH3)4(P(OEt)3)2]-
(PF6)2.16 The P-Ru-N(NO2) bond angle is 178.47(7)°, in-
dicating that the P-Ru-N(NO2) bond is almost linear. The
O-N-O angle of the NO2 in the moiety trans-[Ru(NH3)4(NO2)-
P(OEt)3](PF6) is 117.7(2)°, similar to those obtained for
[Ru(NO2)(PMe3)3(trpy)](ClO4) (114.8°), trans-[Ru(NH3)5NO2]-
Cl (113.2°), and [Ru(trpy)(NC5H4NdNC6H4(8-Me))NO2]ClO4‚
C6H6 (117.6°).29,30
Molecular Orbital Results. For DFT calculations, the
(P(OEt)3)P-Ru-N(NO2) vector is defined as x, while z and y
lie close to the Ru-NH3 vectors (Figure 1, inset).
(24) Frisch, M. J.; Trucks, G. W.; Schlegel, H. B.; Scuseria, G. E.; Robb, M.
A.; Cheeseman, J. R.; Zakrzewski, V. G.; Montgomery, J. A., Jr.; Stratmann,
R. E.; Burant, J. C.; Dapprich, S.; Millam, J. M.; Daniels, A. D.; Kudin,
K. N.; Strain, M. C.; Farkas, O.; Tomasi, J.; Barone, V.; Cossi, M.; Cammi,
R.; Mennucci, B.; Pomelli, C.; Adamo, C.; Clifford, S.; Ochterski, J.;
Petersson, G. A.; Ayala, P. Y.; Cui, Q.; Morokuma, K.; Malick, D. K.;
Rabuck, A. D.; Raghavachari, K.; Foresman, J. B.; Cioslowski, J.; Ortiz,
J. V.; Stefanov, B. B.; Liu, G.; Liashenko, A.; Piskorz, P.; Komaromi, I.;
Gomperts, R.; Martin, R. L.; Fox, D. J.; Keith, T.; Al-Laham, M. A.; Peng,
C. Y.; Nanayakkara, A.; Gonzalez, C.; Challacombe, M.; Gill, P. M. W.;
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M.; Replogle, E. S.; Pople, J. A. Gaussian 98, revision A.6; Gaussian,
Inc.: Pittsburgh, PA, 1998.
Computational Details. All calculations were performed using the
Gaussian 98 suite of programs.24 The starting molecular geometries
were obtained at the UHF/3-21G level of theory. The final molecular
geometry optimizations were performed using the Kohn-Sham density
functional theory (DFT) with the Becke three-parameters hybrid
(25) Wadt, W. R.; Hay, P. J. J. Chem. Phys. 1985, 82, 284-298.
(20) Sheldrick, G. M. SHELX93, Program for Crystal Structure Determination;
University of Gottingen: Gottingen, Germany, 1993.
(21) Johson, C. K. ORTEPII Report ORNL-5138; Oak Ridge National Labora-
tory: Oak Ridge, TN, 1976.
(22) Hoshino, M.; Ozawa, K.; Seki, H.; Ford, P. C. J. Am. Chem. Soc. 1993,
115, 9568-9575.
(23) Hoshino, M.; Maeda, M.; Konishi, R.; Seki, H.; Ford, P. C. J. Am. Chem.
Soc. 1996, 118, 5702-5707.
(26) Becke, A. D. J. Chem. Phys. 1993, 98, 5648-5652.
(27) Casida, M., Chong, D. P., Eds. Recent AdVances in Density Functional
Methods; World Scientific: Singapore, 1995; Vol. 1, p 155.
(28) Casida, M. E.; Jamorski, K. C.; Casida, D. R.; Salahub, D. R. J. Chem.
Phys. 1998, 108, 4439-4449.
(29) Bottomley, F. J. Chem. Soc., Dalton Trans. 1972, 2148-2152.
(30) Leising, R. A.; Kubow, S. A.; Churchill, M. R.; Buttrey, L. A.; Ziller, J.
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9
2548 J. AM. CHEM. SOC. VOL. 126, NO. 8, 2004