2
S. Dianat et al.
J Enzyme Inhib Med Chem, Early Online: 1–5
Figure 1. Structures of reported LOX inhibi-
tors I and II, and designed compounds 6a–o
as new 15-LOX inhibitors.
S
CH3
N
N
N
N
R3
HN
R2
HN
I)
N
R1
O
(
EP6 (II)
R'
S
N
N
N
N
HN
HN
R
R
Cl
N
a-l
N
Cl
6
6m-o
made. The final concentration of substrate will be 122 mM. Five potential of 70 eV. Elemental analysis was performed with an
different concentrations of each compound were tested in Elementar Analysensysteme GmbH VarioELCHNS mode.
triplicate to obtain the inhibition range between 20 and 80%.
The test solution was a mixture of 3 mL phosphate buffer (0.1
M, pH ¼ 8), 50 mL enzyme solution (final concentration:
General procedure for the synthesis of compounds 6a–o
A mixture of 2-chloroquinolin-3-carbaldehyde 3 (1.0 mmol),
heteroaromatic amidine 4a–f (1.0 mmol), appropriate alkyl
isocyanide (1.2 mmol), and NH Cl (1.0 mmol) in toluene
1
67 U/mL), and 50 mL of target compound solution. Being
incubated for 4 min, the substrate (Linoleic acid, final
concentration: 122 mM) was added, and the change in absorb-
ance was measured for 60s at 234 nm. A control test was done
with the same volume of DMSO (50 mL) to eliminate the
effect of DMSO on enzyme activity.
4
(5 mL) was heated under reflux for 12–24 h. After completion
of the reaction, as indicated by TLC, the solvent was
evaporated under reduced pressure, and the residue was
recrystallized from petroleum ether–EtOAc to afford target
compounds 6a–o in 65–93% yields.
Molecular modeling and docking stimulation
All docking simulations were performed using Autodock Vina
(ver. 1.1.1). First, the 3D structure of soybean LOX in
[
2-(2-Chloro-quinolin-3-yl)-imidazo[1,2-a]pyridin-3-yl]-
(1,1,3,3-tetramethyl-butyl)-amine (6c)
complex with 13(S)-hydroproxy-9(Z)-2,11(E)-octadecadienoic
acid (code ID: 1IK3) was retrieved from protein databank
ꢁ
Yield: 0.32 g (80%); pale yellow solid; mp 168–170 C; IR (KBr):
ꢂ1
1
321, 2919, 2848, 1631, 1497, 754 cm ; H NMR (400 MHz,
3
(www.pdb.org). Then, the co-crystallized ligand and water
CDCl ): d 0.94 (s, 9H, C(CH ) ), 1.29 (s, 6H, C(CH ) ), 1.42 (s,
3
3 3
3 2
molecules were removed, and the protein was converted to
pdbqt format using Autodock Tools (1.5.4). To prepare the
ligands for docking, the 2D chemical structure of ligands was
sketched using MarvinSketch 5.8.3, 2012, ChemAxon (http://
www.chemaxon.com) and then converted to 3D format by
Openbabel (ver 2.3.1). Finally, pdbqt format of ligands was
prepared using an Autodock Tools python script, prepare_li-
gand4.py. The docking parameters were set as follow:
size_x¼ 20; size_y ¼ 20; size_z¼ 20; center_x ¼19.693; cen-
ter_y ¼ 0.054; center_z¼ 17.628. The exhaustiveness was set to
2
H, CH ), 3.48 (s, 1H, NH), 6.94 (dd, J ¼ 6.8, 4.0 Hz, 1H, H ),
2
6
7
.63 (t, J ¼ 7.5 Hz, 1H, H
0
), 7.80 (t, J ¼ 7.5 Hz, 1 H, H
0
), 7.93 (d,
7
6
J ¼ 8.0 Hz, 1H, H
0
), 8.09 (d, J ¼ 8.4 Hz, 1H, H
0
), 8.52 (dd,
8
5
J ¼ 6.8, 1.6 Hz, 1H, H ), 8.58–8.59 (m, 2H, H , H ), 8.63 (s, 1H,
7
8
5
1
3
H ); C NMR (100 MHz, CDCl ): d 29.0, 31.5, 31.7, 56.4, 59.4,
0
4
3
1
08.1, 112.0, 126.2, 127.2, 127.5, 127.9, 128.8, 129.0, 130.9,
31.2, 136.0, 141.8, 145.1, 148.0, 149.1, 150.0. MS: m/z (%) 408
1
(
+
15, [M + 2] ), 406 (49, M ). Anal. Calcd for C H ClN : C,
+
24 27 4
7
0.83; H, 6.69; N, 13.77. Found: C, 70.97; H, 6.49; N, 13.84.
1
00, and the max number of retrieved final docked poses was
set to 15 using num_modes parameter. The other docking [2-(2-Chloro-quinolin-3-yl)-8-methyl-imidazo[1,2-a]pyridin-3-
parameters were left as default. Finally, the most favorable yl]-cyclohexyl-amine (6d)
docked poses in terms of free binding energy were selected
ꢁ
Yield: 0.35 g (91%); pale yellow solid; mp 143–145 C; IR (KBr):
for analyzing of enzyme–inhibitor interactions.
ꢂ1
1
327, 2971, 1640, 1568, 781 cm ; H NMR (400 MHz, CDCl ):
3
3
d 1.01–1.69 (m, 10 H, 5CH , cyclohexyl), 2.41 (s, 3H, CH ), 2.67
2
3
Chemistry
(
s, 1H, NCH), 3.32 (s, 1H, NH), 6.79 (t, J ¼ 6.4 Hz, 1H, H ), 7.02
0
7 6
6
Commercially available chemicals and reagents were purchased (d, J ¼ 6.4 Hz, 1H, H
from Merck and Fluka Chemical Company and used without (m, 1H, H
), 7.92 (d, J ¼ 8.0 Hz, 1H, H
further purification. Melting points are measured with a Kofler
), 8.24 (d, J ¼ 6.4 Hz, 1H, H ), 8.61 (s, 1H, H
hot stage apparatus and are uncorrected. H and C NMR spectra (100 MHz, CDCl ): d 21.4, 24.6, 25.6, 33.8, 56.7, 111.6, 121.7,
), 7.61 (t, J ¼ 7.6 Hz, 1H, H
), 7.78–7.82
0
0
5
), 8.10 (d, J ¼ 8.4 Hz, 1H,
7
1
3
H
0
0
); C NMR
4
8
5
1
13
3
were run on a Bruker FT-400 in CDCl , using TMS as an internal 123.4, 125.7, 127.0, 127.1, 127.3, 127.4, 128.4, 129.7, 130.5,
standard. IR spectra were recorded on a Shimadzu 470 spectro- 135.6, 140.8, 141.3, 147.1, 149.0. MS: m/z (%) 392 (19,
3
+
photometer (KBr disks). MS were recorded with an Agilent [M + 2] ), 390 (58, M ). Anal. Calcd for C23
+
H23ClN : C,
4
Technology (HP) mass spectrometer operating at an ionization 70.67; H, 5.93; N, 14.33. Found: C, 70.45; H, 6.13; N, 14.12.