.
Angewandte
Communications
thesized following the same strategy as that described for 1a.
Gratifyingly, comparison of the NMR and CD spectra of
pellasoren (1a), (14R)-pellasoren, and the authentic sample
verified the absolute and relative configuration of this natural
product as shown for 1a (Scheme 1).
Verification of the pellasoren configuration by total
synthesis confirms the above-described deviations from
bioinformatic analysis, and thus underpins the current limits
of ER sequence-based stereochemistry prediction. When
seeking to improve bioinformatic tools, the pellasoren ER
domains may provide a useful starting point for future
biochemical and structural studies, as they show 92.4%
identity spanning 315 aa residues where Arg43 from PelF-
ER is replaced by Leu43 in PelD-ER. We hypothesize here
that Arg43 could be another important amino acid to govern
the stereochemistry of the reduced extender unit.
The genes involved in biosynthesis of the rarely observed
“glycolate” extender unit are located upstream of pelA-F.
Specifically, we propose that PelG to PelK generate the
unusual glycolate extender unit believed to be incorporated
by module 2, because these proteins show high similarity to
proteins responsible for synthesis of glycolate precursors in
the soraphen, ansamitocin, and FK-520 pathways (Table 1).
Unfortunately and despite serious efforts, our attempts to
prove the hypothesis based on gene cluster analysis by
incorporation studies using isotopically labeled precursors
does not have a FkbH analogue but uses a PelG homologue
instead. Since PelG-AT is supposed to catalyze this loading
step during pellasoren biosynthesis, PelK seems to be
redundant. The pel gene cluster actually represents the first
finding with this specific gene arrangement. However, when
speculating about a hypothetical function for PelK in
pellasoren biosynthesis it has to be pointed out that the
precise mechanism for loading of phosphoglycerate has to
date not been experimentally proven for any of the known
biosynthetic pathways which employ glycolate extender units.
Thus, the presence of two proteins potentially able to catalyze
the same loading reaction in the pellasoren pathway raises
more questions concerning the biosynthesis of this extender
unit. The involvement of pelK in the latter using targeted
inactivation is not straightforward because of the pel operon
organization, but will be the subject of future studies.
Pellasoren A is cytotoxic against human colon cancer cells
of the HCT-116 cell line with an IC50 of 155 nm. Interestingly,
pellasoren B is around one magnitude less active against
HCT-116 with an IC50 of 2.35 mm, emphasizing the impor-
tance of the linear an all-(E) configuration. Furthermore,
both pellasorens show a strong effect on lysosomes. Upon
incubation with osteosarcoma cells (U-2 OS) using an
acridine orange assay, the pH of the lysosomes changed
from acidic to neutral values (Figure S10 in the Supporting
Information). This is related to an apoptotic mechanism that
remains elusive at the current state
of research.[19]
Table 1: Comparison of proteins involved in biosynthesis of glycolate extender units.
This report features a new cyto-
toxic compound from Sorangium
cellulosum. We present the first
total synthesis of pellasoren and
thereby validated the moleculeꢀs
stereochemistry. A Wittig reaction
in the last step of the synthesis was
used to install the sensitive polyene
system. Further key steps include
Non-NRPS/PKS proteins of the So ce38 pellasoren biosynthetic machinery
Protein aa[a] Proposed function of
the homologous protein
Identity/similarity to:
FK-520
soraphen
biosynthesis genes
biosynthesis genes
PelG
794 acyl transferase (28–355)
Ppant attachment site (427–480)
57/65% (SorC, AT part)
22/28% (SorC, ACP part) 21/29% (FkbJ)
18/26% (FkbH)
FkbM methyltransferase (589–744) 39/48% (SorC, OMT part)
8/15% (FkbG)
36/51% (FkbK)
27/44% (FkbJ)
33/48% (FkbI)
41/57% (FkbH)
PelH
PelI
PelJ
283 hydroxyacyl-CoA dehydrogenase
93 acyl carrier protein
384 acyl-CoA dehydrogenase
74/82% (SorD)
57/67% (SorX)
49/60% (SorE)
not present
a
vinylogous Mukaiyama aldol
reaction of a chiral vinylketene
silyl N,O-acetal and a stereoselec-
tive intramolecular protonation,
which was shown to be an efficient
and practical protocol in natural
PelK
376 HAD superfamily phosphatase
[a] Amino acid sequence length.
and employing MS/MS analysis were not conclusive owing to
thorough metabolism of the fed compounds (Figure S7 in the
Supporting Information).[7] However, the above-mentioned
similarity to known glycolate pathways strongly supports the
biosynthesis as shown in Scheme 2.
products total syntheses for the first time. Identification of the
biosynthetic machinery nicely complements this work by
enabling bioinformatics and chemical analyses including an
unusual pathway to the glycolate extender unit.
It is assumed that 1,3-bisphosphoglycerate is loaded to an
ACP, and according to soraphen biosynthesis, PelG-ACP
binds 1,3-phosphoglycerate loaded by the PelG-AT domain.
Methylation could then be catalyzed by the internal SAM-
dependent PelG-MT domain. These functions are usually
facilitated by discrete proteins rather than a multifunctional
protein. Indeed, it appears that a trifunctional enzyme is
present (Scheme 2b). Moreover, the presence of the pelK
gene is fairly unexpected. PelK shows homology to FkbH,
a protein that is assumed to load 1,3-bisphosphoglycerate to
FkbJ in the FK-520 pathway.[5] The soraphen biosynthesis
Experimental Section
The pellasoren gene cluster sequence was deposited in the EMBL
database with the accession number HE616533. Full experimental
details, including stucture elucidation procedures and bioinformatic
analysis, can be found in the Supporting Information.
Received: January 12, 2012
Revised: February 16, 2012
Published online: && &&, &&&&
4
ꢀ 2012 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim
Angew. Chem. Int. Ed. 2012, 51, 1 – 6
These are not the final page numbers!