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binding site(s) of the protein when a competitive binder (warfarin,
Ka = 3.4 × 104 M−1) is present in the solution. However, with salicylic
acid an opposite effect was observed. Upon addition of increasing
amount of salicylic acid (10, 20, 30, 40 and 50 μM), the fluorescence in-
tensity gradually decreased to an overall 70% less than the original, indi-
cating effective displacement of 1 from the HSA. Salicylic acid binds at
both subdomain IB and IIA [39]. Therefore, the effective displacement
by salicylic acid indicates that 1 binds predominantly at IB or between
IB and IIA; in the latter scenario, it would be displaced and migrated
into the subdomain IB in presence of a site IIA binder—such as warfarin.
The fluorescence enhancement in presence of warfarin explains that
phenomenon, as discussed earlier. In summary, based on these dis-
placement experiments, we conclude that 1 predominantly binds
within the IB subdomain of HSA.
To obtain a more realistic view of the binding site within HSA, mo-
lecular dockings were performed with AutoDock Vina program [40].
Total three blind dockings were performed, and in each docking the
search space included the entire surface of the protein. The binding en-
ergy for each pose was negative, suggesting spontaneous, energetically
favorable binding process. As shown in Fig. 7b, 1 was mainly (93% of the
total 27 conformers) bound at site IB, thus corroborating with the
experiments.
On the other hand, the site specific binders exhibited minimal dis-
placement when titrated against 1@BSA complex (Fig. 7c), as revealed
by the minimal change of fluorescence emission. For warfarin 4% in-
crease and for salicylic acid 21% decrease was recorded, respectively
(Fig. 7c). As anticipated, insignificant change in intensity was observed
when a 1:1 complex of 1@BSA was titrated with ibuprofen. All these dis-
placement assays suggest that 1 does not bind in the common drug
binding sites of BSA. Therefore, to obtain a visual perspective of the com-
plexation site, three blind molecular dockings were performed with
BSA. As shown in Fig. S8 (electronic supplementary information), 1 pre-
dominantly binds between site IB and IIIA (60% of the total 27 con-
formers), which is in accordance with the displacement experiments,
and only 11% of the conformers were located at site IB.
Furthermore, in highly viscous glycerol, the emission intensity at
780 nm increases dramatically. An eight fold enhancement was re-
corded with 90% glycerol in phosphate buffer (Fig. S12, electronic sup-
plementary information), suggesting a significant conformational
restriction must be responsible for the reduced decay of the excited
state energy of the conformer.
3. Conclusion
We have designed and developed a novel long-wavelength emitting
charge transfer probe. Our design is based on a donor-π-π-acceptor
fluorophoric framework that can undergo deprotonation at physiologi-
cal pH to produce a new fluorochrome.
The new fluorochrome displayed turn-on response toward HSA,
both in the red and NIR-I region of the spectrum. It selectively
responded to HSA over other common proteins and enzymes, including
homologue BSA. Based on concentration dependent titration experi-
ments the limit of detections were calculated and found to be 10 mg/L
and 20 mg/L in the red and NIR-I window, respectively. The fluores-
cence enhancement of the probe was attributed to the minimization
of the torsional modes of deactivation of the dimethine-bridge. The se-
lective sensing mechanism was investigated by the displacement assays
and molecular docking, and it was ascribed to a strong supramolecular
complex of the probe at a specific site of HSA.
The dual emission window and the selective turn-on response to-
ward HSA make 1 a practically viable probe for biological applications
[43]. Moreover, the strategy of generating a stronger phenolate donor
from its latent form provides a convenient route to produce background
free turn-on probes for various biological applications. The introduction
of various substituents on the benzene ring to manipulate the intramo-
lecular charge transfer to extend the absorption and emission wave-
lengths appears to be a viable approach. Such fluorophore should be
accessible synthetically from condensation reaction between an alde-
hyde precursor and a reactive acceptor.
From the experimental and molecular modelling results the selec-
tive response of 1 toward HSA can be attributed to its site-specific com-
plexation with HSA. The calculated average binding energy obtained
from the molecular dockings (−8.8 kcal/mol)—as well as the experi-
mentally determined association constant (Benesi-Hildebrand plot;
Ka = 1.4 × 105 M−1; Fig. S9, electronic supplementary information)—
suggest a strong supramolecular complex between 1 and HSA [18,41]
Site I in HSA comprises four helix bundles located in subdomain IB.
This site is water accessible, however, it is more hydrophobic than the
site I of BSA [42]. The hydrophobic residue Phe 122 and two other hy-
drophobic residues res 120 and res 126 are located on a small surface
exposed helix. At site IB, the hydrophobic as well as other non-
covalent interactions, such as polar interaction with lysine 137, rigidify
the fluorophore, which could make it more emissive in the bound state
(Fig. S10a, b, and d in electronic supplementary information) [18–22].
On the other hand, poor interactions (average binding energy =
−7.6 kcal/mol obtained from the molecular dockings) of 1 with BSA at
a non-specific site (between domain I and III, Fig. S8) most likely results
minimal fluorescence enhancement (Figs. S10c, d, and S11, electronic
supplementary information). In case of BSA, 1 was predominately
found at the intersection between IB and III (Figs. S8 and S10d in elec-
tronic supplementary information). This intersection is solvent accessi-
ble and the amino acid sequence differs from HSA in several analogous
helix regions [42]. For example, between HSA and BSA at analogous res-
idues 189 and 190, HSA is very hydrophilic whereas BSA is strongly hy-
drophobic. The composition of amino acid sequence between 455 and
457 at site III in BSA also differs from HSA. But, both are considered as
very hydrophobic. Moreover, at the binding site of BSA no polar interac-
tions between 1 and residues were found from the molecular docking
analysis. These docking results demonstrate that 1 selectively binds at
site IB which results in the difference in fluorescence response from BSA.
CRediT authorship contribution statement
Rajib Choudhury:Conceptualization, Methodology, Resources,
Writing - original draft, Supervision, Project administration, Funding ac-
quisition, Investigation, Validation.Benjamin Quattlebaum:Investiga-
tion, Formal analysis.Charles Conkin:Investigation, Formal analysis.
Siddhi Rajeshbhai Patel:Investigation, Visualization.Kallie Menden-
hall:Investigation.
Declaration of competing interest
The authors declare that they have no known competing financial
interests or personal relationships that could have appeared to influ-
ence the work reported in this paper.
Acknowledgements
This publication was made possible by the Arkansas INBRE program,
supported by a grant from the National Institute of General Medical Sci-
ences (NIGMS), and P20 GM103429 from the National Institutes of
Health. We wish to thank Dr. Anindya Ghosh at University of Arkansas,
Little Rock, for collecting the 1H and 13C NMR spectra.
Appendix A. Supplementary data
Details of the synthesis of the probes, 1H and 13C NMR spectra,
photostability study under visible light, details of molecular dockings, ti-
tration experiments, and additional spectra. This material is available