Angewandte
Chemie
Abstract: Activity-directed synthesis (ADS), a novel discovery
approach in which bioactive molecules emerge in parallel with
associated syntheses, was exploited to develop a weakly bind-
ing fragment into novel androgen receptor agonists. Harness-
ing promiscuous intermolecular reactions of carbenoid com-
pounds enabled highly efficient exploration of chemical space.
Four substrates were prepared, yet exploited in 326 reactions to
explore diverse chemical space; guided by bioactivity alone, the
products of just nine of the reactions were purified to reveal
diverse novel agonists with up to 125-fold improved activity.
Remarkably, one agonist stemmed from a novel enantioselec-
tive transformation; this is the first time that an asymmetric
reaction has been discovered solely on the basis of the
biological activity of the product. It was shown that ADS is
a significant addition to the lead generation toolkit, enabling
the efficient and rapid discovery of novel, yet synthetically
accessible, bioactive chemotypes.
ure 1A). However, in this validation work, reliance on
intramolecular reactions meant that the structural diversity
of possible products was largely encoded by the substrates
used. We envisaged that ADS would be enhanced by
exploiting intermolecular reactions as the range of possible
T
he discovery of biologically active molecules typically
involves the synthesis and testing of many compounds, each
individually crafted to optimize the arrangement of function-
ality. Such workflows tend to induce scientists to exploit
a limited palette[1–3] of reliable chemical transformations. As
a direct consequence, designed arrays comprise compounds
that are readily prepared, tending to limit diversity and,
potentially, to focus on unproductive areas of chemical space.
We recently introduced activity-directed synthesis
(ADS),[4] a novel discovery approach in which bioactive
small molecules emerge together with associated syntheses.
ADS is iterative, borrowing concepts from biosynthetic
pathway evolution.[5] In each round, the components of
diverse reaction arrays are widely varied; by exploiting
reactions with many possible outcomes, diverse chemical
space is explored. After catalyst removal, the crude product
mixtures are screened, and reactions that yield active
products inform subsequent reaction array design. Only
reactions that yield bioactive product mixtures are ever
scaled up to enable the characterization and identification of
the responsible products. ADS is function-driven,[6] focusing
resources on reactions that yield bioactive products.
Figure 1. Discovery of novel androgen receptor agonists by ADS.
A) Discovery of novel chemotypes enabled by intramolecular metal-
catalyzed carbenoid reactions.[4] B) Core fragment for elaboration.
C) Envisaged exploitation of intermolecular metal-catalyzed reactions
to drive productive fragment elaboration.
reaction outcomes—and thus the chemical space explored—
would be dramatically increased. It was proposed to exploit
ADS to drive the productive elaboration of the 4-cyano-3-
trifluoromethylphenylacetamide fragment found in many
modulators of AR.[7] Although the core motif displayed
only modest agonism (1; EC50 = 92 Æ 13 mm; EC50 = concen-
tration of ligand needed to induce the half-maximal observed
effect), we reasoned that intermolecular reactions of related
diazo acetamides could help identify productive strategies for
fragment growth (Figure 1C).[8–10]
We recently harnessed intramolecular metal-catalyzed
carbenoid reactions in the ADS of androgen receptor (AR)
agonists. ADS drove the discovery of both novel ligands—
based on scaffolds with no annotated activity against the
receptor—and associated high-yielding syntheses (Fig-
[*] Dr. G. Karageorgis, Dr. M. Dow, Dr. A. Aimon, Dr. S. Warriner,
Prof. A. Nelson
The a-diazo amides 2–5 incorporate the 4-cyano-3-tri-
fluoromethylphenyl fragment and bear a group (N-methyl or
N-cyclopropyl) expected to suppress intramolecular reac-
tions.[11] In round one, we performed an array of 192 reactions
randomly chosen from 480 possible combinations of four
substrates (2–5), ten co-substrates (6a–6i or no co-substrate),
six catalysts, and two solvents (CH2Cl2 or toluene; Fig-
ure 2A). The co-substrates were selected on the basis of
diversity of possible intermolecular reactions with metal
carbenoids[12–14] and the catalysts on the basis of their diverse
reactivity. We initially showed that the diazo substrates and
School of Chemistry and Astbury Centre for Structural Molecular
Biology, University of Leeds
Leeds, LS2 9JT (UK)
E-mail: s.l.warriner@leeds.ac.uk
Supporting information for this article is available on the WWW
ꢀ 2015 The Authors. Published by Wiley-VCH Verlag GmbH & Co.
KGaA. This is an open access article under the terms of the Creative
Commons Attribution License, which permits use, distribution and
reproduction in any medium, provided the original work is properly
cited.
Angew. Chem. Int. Ed. 2015, 54, 13538 –13544
ꢀ 2015 The Authors. Published by Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim