10.1002/cmdc.201700744
ChemMedChem
COMMUNICATION
Monosaccharide derivatives with low nM lectin affinity and high
selectivity based on combined fluorine-amide, phenyl-arginine,
sulfur-π, and halogen bond interactions
Fredrik R. Zetterberg,*[a] Kristoffer Peterson,[b] Richard E. Johnsson,[c] Thomas Brimert,[c] Maria
Håkansson,[d] Derek T. Logan,[d,e] Hakon Leffler,[f] and Ulf J. Nilsson*[b]
Abstract: The design of small and high affinity lectin inhibitors
remains a major challenge because lectin natural ligand binding
sites often are shallow and have polar character. We report that
derivatizing galactose with un-natural structural elements that form
multiple non-natural lectin-ligand interactions (orthogonal multipolar
fluorine-amide, phenyl-arginine, sulfur-π, and halogen bond) can
provide inhibitors with extraordinary affinity (low nM) for the model
lectin, galectin-3, which is over 5 orders of magnitude higher than
the parent galactose, and, moreover, is selective compared to other
galectins.
by modifying natural carbohydrate core structures with unnatural
chemical groups,[2a] for example the heparin mimetic
Fondaparinux,[4] nM-affinity inhibitors of the uropathogeninic E.
coli adhesin FimH obtained by optimized interactions with CRD-
lining tyrosine side chains,[5] sodium glucose transporter
(SGLT2) inhibitors of the glifozin family,[6] influenza
neuramnidase inhibitors Zanamivir and Oseltamivir,[7] selectin
inhibitors,[8] siglec inhibitors based on optimized substituents on
a sialic acid core structure,[9] and galectins,[10] the topic of this
report.
Similar to other lectins, the galectin carbohydrate-binding site is
shallow, found along the concave side of the ~130 amino acid ß-
sandwich carbohydrate recognition domain (CRD).[11] The
carbohydrate binding site contains the galectin-defining
galactoside-binding site conferred by a conserved motif of about
7 amino acids. By itself, this subsite has weak binding to
galactosides, with Kd in the mM range. Addition of saccharides
on either side of the galactose can significantly enhance affinity,
but also decrease it. In the most commonly used galectin
saccharide inhibitors lactose, N-acetyl-lactosamine, and
thiodigalactoside the addition of a monosaccharide on the
reducing side of the galactose increases affinity by 10-100 fold,
to Kds in the mid µM range. Previously we achieved much higher
affinities (nM) by derivatizing such disaccharides with artificial
moieties that targets additional sites at either end, that is C3-
Lectin binding to glycoconjugates are rate-limiting in many
pathophysiological
processes[1]
including
host-pathogen
interaction, inflammation, immunity and cancer. Consequently,
the discovery of drug-like inhibitors of such interactions is
receiving significant attention.[2] However, finding small high
affinity lectin inhibitors is a major challenge because the lectin
carbohydrate-binding sites tend to be polar and shallow. Lectins
typically bind natural glycans with multiple hydrogen bonds,
sometimes enhanced by CH-π stacking of carbohydrate CH
onto aromatic amino acid side chains, and with recently
highlighted contributions from conformational entropy.[3] This
usually results in weak-medium-to-affinity (µM-mM) for a small
mono- or disaccharide, although exceptions are known. The
challenge then is to find lectin inhibitors with drug like affinities,
low nM, and pharmacological properties that are much better
than the natural ligands. This has been achieved in some cases
derivatization of N-acetyl-lactosamine and C3,C3'-derivatization
10b, 13]
of thiodigalactoside with aromatic ester,[12] amide,[10a,
or
14]
triazole[10c,
moieties. Recently we found that C3
multifluorinated phenyl groups providing orthogonal multipolar
fluorine-amide interactions strongly enhanced affinity for
galectin-3.[10c,
This inspired attempts to replace the
[a]
[b]
Dr. F. Zetterberg
14a]
Galecto Biotech AB Sahlgrenska Science Park
Medicinaregatan 8 A, SE-413 46 Gothenburg, Sweden
E-mail: fz@galecto.com
monosaccharide at the reducing side of galactose with a less
polar aglycon, with the aim of still reaching high affinity while
keeping the galactose derivatized with a C3 trifluorophenyl
group. Indeed, with 4-methylphenylthio as the aglycon 1a, single
digit µM affinity for galectin-3 was reached.[14a]
Mr. K. Peterson, Prof. U. J. Nilsson
Centre for Analysis and Synthesis, Department of Chemistry
Lund University, POB 124, SE-221 00 Lund, Sweden
E-mail: ulf.nilsson@chem.lu.se
Here we report further optimization of the thioglycosidic aglycon
[c]
[d]
[e]
Dr. R. Johnsson, Dr. T. Brimert
Red Glead Discovery AB, Medicon Village, SE-223 63 Lund,
Sweden
Dr. M. Håkansson
SARomics Biostructures AB, Medicon Village, SE-223 63 Lund,
Sweden
that affords galectin-3 inhibitors with low nM-affinities
–
unprecedented for a monosaccharide galectin inhibitor. Series of
β- (1b-c) and α-thio-D-galactopyranosides (2a-m) carrying the
same C3 4-(3,4,5-trifluorophenyl)-1H-triazole substituent were
synthesized (Scheme 1) and affinities compared with 1a using a
competitive fluorescence anisotropy assay (Tables 1-3).[10c]
Dr. D. T. Logan
Biochemistry and Structural Biology, Center for Molecular Protein
Science, Department of Chemistry, Lund University, Box 124, SE-
221 00 Lund, Sweden
[f]
Prof. H. Leffler
Department of Laboratory Medicine, Section MIG, Lund University
BMC-C1228b, Klinikgatan 28, SE-221 84 Lund, Sweden
Supporting information for this article is given via a link at the end of the
document.
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