Synthesis and Study of a Versatile Self-Assembling Lipid
J. Am. Chem. Soc., Vol. 121, No. 9, 1999 1859
(60 mL), and nitromethane (60 mL) was stirred at 65 °C under nitrogen
for 12 h. Solvent was then evaporated and dichloromethane (80 mL)
was added. The majority of mercury salts were filtered out on a Celite
pad. After dichloromethane was evaporated, the residue was subjected
to column chromatography purification (silica gel, 1.8% methanol in
benzene, Rf ) 0.50). Pure compound 5 (1.3 g) was obtained (58%).
1
[R]D -5.2° (c 0.79, CH2Cl2); H NMR (300 MHz, CDCl3 with trace
d5-Py) δ 5.16 (1H, t, J ) 9.6 Hz), 5.05 (1H, t, J ) 9.6 Hz), 4.94 (1H,
dd, J ) 9.6, 8.1 Hz), 4.46 (1H, d, J ) 8.1 Hz), 4.24 (1H, dd, J ) 12.1,
4.8 Hz), 4.10 (1H, dd, J ) 12.1, 2.4 Hz), 4.00 (2H, m), 3.90 (1H, m),
3.66 (1H, m), 3.60 (1H, m), 3.43 (1H, t, J ) 7.5 Hz), 2.08 (2H, m),
2.05 (3H, s), 2.01 (3H, s), 1.99 (3H, s), 1.97 (3H, s), 1.52 (4H, m),
1.22 (m), 0.84 (6H, t, J ) 6.6 Hz); 13C NMR (75 MHz, CDCl3 with
trace d5-Py) δ 170.80, 170.24, 169.35, 169.17, 111.97, 100.58, 73.62,
72.76, 71.74, 71.15, 69.81, 68.28, 66.84, 61.84, 37.71, 37.32, 33.21,
31.87, 29.90, 29.65, 29.31, 23.96, 23.71, 22.64, 20.70, 20.57, 14.08;
FAB-HRMS (NBA), calcd C51H93O12 [M+H]+ 897.6667, found
897.6644.
Compound 2. Anhydrous potassium carbonate (2 g) was added to
a methanol solution (10 mL) of compound 5 (0.67 g, 0.75 mmol). The
mixture was stirred at room temperature for 6 h before it was filtered.
The clear filtrate was neutralized with acetic acid and then passed
through a Celite pad. After removing solvent, compound 2 was obtained
in quantitative yield. [R]D -8.0° (c 1.82, CH2Cl2); 1H NMR (600 MHz,
CDCl3:CD3OD 2:1 with trace d5-Py, chemical shifts relative to TMS
signal) δ 4.19 (H1′, d, J ) 7.8 Hz), 4.13 (H2, m), 4.00 (H1a, t, J ) 7.8
Hz), 3.90 (H4a, m), 3.76 (H6a′, dd, J ) 12.2, 2.2 Hz), 3.68 (H6b′, dd, J
) 12.2, 4.8 Hz), 3.60 (H4b, m), 3.47 (H1b, t, J ) 7.8 Hz), 3.32 (H3′ and
H4′, m), 3.19 (H5′, m), 3.15 (H2′, m), 1.86 (H3a, m), 1.77 (H3b, m), 1.50
(Hâ/â′, m), 1.18 (CH2’s, m), 0.79 (CH3’s, t, J ) 6.6 Hz); 13C NMR
(125 MHz, CDCl3:CD3OD 2:1 with trace d5-Py) δ 111.89 (CR), 102.51
(C1), 76.01 (C3′), 75.80 (C5′), 73.42 (C2), 73.16 (C2′), 69.74 (C4′), 69.36
(C1), 66.24 (C4), 61.12 (C6′), 37.16 (Câ), 36.69 (Câ′), 33.20 (C3), 31.43
(Cγ/Cγ′), 29.40, 29.18, 29.09, 28.86, 23.48, 23.22 (Cδ), 23.14 (Cδ′), 22.16
(Cꢀ/Cꢀ′), 13.38 (CH3’s); FAB-HRMS (NBA), calcd C43H84O8K [M +
K]+ 767.5803, found 767.5804.
Conformational Analysis: Two-Dimensional (2-D) NMR Experi-
ments. All NMR spectra of compound 2 were obtained in a solvent
system consisting of chloroform/methanol/pyridine in the ratio of 2/1/
trace. All 2-D spectra were measured at 600 MHz. Double quantum
filtered J-correlated spectroscopy (DQF-COSY), gradient 1H-13C
heteronuclear multiquantum coherence spectroscopy (1H-13C HMQC),
and phase sensitive nuclear Overhauser effect spectroscopy (NOESY)
experiments were performed by using a total of 256 real data sets, with
32 acquisition transients each and a relaxation delay of 1.8 s between
transients. Mixing times of 300, 400, and 500 ms were used in the
NOESY experiments. Volume integrations of cross-peaks were per-
formed with the standard VARIAN software. A mixing time of 500
ms was used to calculate nOe cross-peak volumes since it gave the
best signal-to-noise ratio.
Figure 8. 3-D reconstruction with use of confocal reflection images
from 10 sequential laser confocal microscopy scans through compound
2. The overall depth of the reconstructed image is 5 µm. Note the
conical shape of the dislocations and the complimentary concave shapes
of their bases (see edges) consistent with an upward dislocation of the
layers.
tetrahydrofuran (200 mL) was stirred under nitrogen at 50 °C for 24 h.
After the mixture was cooled, the reaction was quenched with
methanol-water and extracted with ether. The ether layer was washed
with water, then dried over sodium sulfate and concentrated. The residue
was stirred at room temperature for 24 h with tetrahydrofuran (200
mL) and 6 N hydrochloric acid (200 mL). The reaction mixture was
then diluted with water and ether. The ether layer was washed with
sodium bicarbonate solution and water, then dried over sodium sulfate
and concentrated. The residue was crystallized from ethanol to give
11.5 g of 3 (overall 80%). Mp 80.0-82.0 °C [lit.35 mp 79.7-81.7 °C];
1H NMR (300 MHz, CDCl3) δ 2.36 (4H, t, J ) 7.4 Hz), 1.54 (4H, m),
1.23 (m), 0.86 (6H, t, J ) 6.6 Hz); 13C NMR (75 MHz, CDCl3) δ
42.82, 31.93, 29.70, 29.66, 29.62, 29.49, 29.42, 29.37, 29.27, 23.89,
22.69, 14.14 (signal corresponding to carbonyl carbon was not
observed); FAB-HRMS (NBA), calcd C33H67O [M + H]+ 479.5192,
found 479.5201.
Compound 4. A mixture of compound 3 (4.78 g, 10 mmol),
trimethyl orthoformate (3.3 mL, 30 mmol), p-toluenesulfonic acid
monohydrate (0.1 g), methanol (25 mL), and tetrahydrofuran (50 mL)
was refluxed for 12 h. After the reaction was quenched by triethylamine,
the mixture was poured into sodium bicarbonate-ice water and
extracted with petroleum ether. The ether layer was dried over sodium
sulfate and concentrated. The identity of the dimethoxy acetal inter-
mediate was confirmed by the presence of a signal at δ 3.10 (6H, s,
OCH3) in 1H NMR (300 MHz, CDCl3 with trace d5-Py) and the signals
at δ 103.91 (quaternary carbon) and δ 47.58 (OCH3) in 13C NMR (75
MHz, CDCl3 with trace d5-Py). The residue was dissolved in anhydrous
N,N-dimethylformamide (50 mL) and tetrahydrofuran (50 mL) with
(S)-1,2,4-butanetriol (1.6 g, 15 mmol). The mixture was refluxed for
24 h. The reaction was then quenched by triethylamine. The mixture
was poured into sodium bicarbonate-ice water and extracted with
petroleum ether. The ether layer was dried over sodium sulfate,
concentrated, and stored with a trace of pyridine added. The yield was
3.9 g (69% from compound 3). 1H NMR (300 MHz, CDCl3 with trace
d5-Py) δ 4.19 (1H, m), 4.06 (1H, m), 3.77 (2H, t, J ) 5.7 Hz), 3.50
(1H, t, J ) 8.0 Hz), 1.78 (2H, m), 1.55 (4H, m), 1.22 (m), 0.84 (6H,
t, J ) 6.5 Hz); 13C NMR (75 MHz, CDCl3 with trace d5-Py) δ 112.46,
75.31, 69.90, 60.56, 37.71, 37.24, 35.45, 31.87, 29.89, 29.65, 29.57,
29.31, 23.93, 23.72, 22.64, 14.08; FAB-HRMS (NBA), calcd C37H75O3
[M + H]+ 567.5716, found 567.5730.
1H NMR Spin Simulation. Protons 1a, 1b, 4a, 4b, 2, 3a, and 3b of
compound 2 were described as a 7-spin system ABCDEXY. Spin
simulation of this spin system was carried out with VARIAN standard
spin simulation software.
Molecular Mechanics (MM) Calculations and Grid Search. MM
calculations were performed on a Silicon Graphics 4D310 computer
using the DREIDING force fields36 implemented in the BIOGRAF
(Molecular simulations Inc., Waltham, MA 02154) program. The default
parameters given in this program for the carbohydrate rings were used
without modification since they had been validated earlier.37 The MM
calculations were performed in vacuo. Calculated nOe distance
constraints were included as harmonic restraints with a force constant
of 10 000 kcal‚mol-1‚Å-2
.
Grid search was performed by using the sequential search mode in
the BIOGRAF program, with a 10° step growth search from 0° to 360°
for each defined dihedral angle.
Packing/Phase Behavior Characterization: Differential Scanning
Calorimetry (DSC). DSC measurements were made on a Microcal-2
Compound 5. A mixture of compound 4 (1.4 g, 2.5 mmol),
acetobromo-R-D-glucose (1.5 g, 3.6 mmol), mercury(II) oxide (0.22 g,
1 mmol), mercury(II) cyanide (1.3 g, 5 mmol), freshly distilled benzene
(36) Mayo, S. L.; Olafson, B. D.; Goddard, W. A. J. Phys. Chem. 1990,
94, 8897-8909.
(37) Wang, Y.; Hollingsworth, R. I. Biochemistry 1996, 35, 5647-5654.
(35) Kosak, A. I.; Swinehart, J. S. J. Org. Chem. 1960, 25, 222-225.