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P. Vacchina et al. / Experimental Parasitology 186 (2018) 17e23
1. Introduction
subtilis lacks a LipB homologue, but encodes one LipA and three LplA
homologues (LplJ, LipM and LipL). One of them, LplJ has the ligase
function. This Gram-positive bacterium presents a variation in the
synthesis/lipoylation pathway: LipM is an octanoyl transferase that
specifically transfers octanoate from ACP to the H protein. LipL is an
amidotransferase that transfers the octanoyl moiety from H protein
to the E2 subunits of dehydrogenases (Cronan, 2016). Saccharomyces
cerevisiae encodes Lip2, Lip5 and Lip3, structural homologues of LipB,
LipA and LplA respectively. Lipoylation of H protein is required for
lipoylation of E2 and it has been suggested that the yeast would be
unable to scavenge lipoate, indicating that Lip3 could have amido-
transferase activity, like B. subtilis LipL (Schonauer et al., 2009).
However, it was recently shown that whereas Lip2 is an octanoyl-
ACP:protein transferase, apparently specific for H protein, Lip3 is an
octanoyl-CoA:protein transferase involved in the acylation of E2
subunits (Hermes and Cronan, 2013).
A survey of trypanosomatid genomes showed the presence of
genes encoding subunits of PDH (E1p, E3Bp, E2p), KGDH (E1k, E2k),
BCDH (E1b, E2b) and GCS (P, H and T proteins), and a sole DHLDH
probably shared by the four complexes. It also revealed the pres-
ence of enzymes putatively involved in lipoate synthesis/lip-
oylation, including orthologs of LipA (or Lip5), LipB (Lip2) and LplA
(lip3) (Spalding and Prigge, 2010).
Indirect experimental evidence indicated the absence of lipoate
salvage in these protists (Stephens et al., 2007), suggesting that as
observed in yeast, LplA or Lip3 homologues could not be true li-
gases. The lack of salvage however, should facilitate the use of in-
hibitors of lipoate metabolism in chemotherapy, as the only source
of LA for the parasite would be the one produced by the de novo
pathway. The fact that mammals are highly dependent on LA
derived from food and intestinal bacteria makes this feature even
more attractive (Bustamante et al., 1998).
Several enzyme complexes widely distributed in nature require
lipoic acid (6,8-dithiooctanoic acid;LA) as prostheticgroup. The most
relevant of them are pyruvate dehydrogenase (PDH), 2-ketoglutarate
dehydrogenase (KGDH), branched-chain 2-ketoacid dehydrogenase
(
BCDH) and the glycine cleavage system (GCS) (Perham, 2000; Douce
et al., 2001; Spalding and Prigge, 2010). These are involved in
important metabolic pathways needed to sustain cell viability. PDH
produces acetyl-CoA, driving the pyruvate generated in glycolysis to
the tricarboxylic acid (TCA) cycle (Tielens and van Hellemond, 2009)
and to the synthesis of fatty acids (Ramakrishnan et al., 2013; Uttaro,
2
014), sterols (de Souza and Rodrigues, 2009) and other cell com-
ponents. Succinyl-CoA produced by KGDH is an intermediate of the
TCA cycle, precursor of several amino acids and substrate in the
synthesis of porphyrins. Ketoacids derived from the deamination of
valine, leucine and isoleucine are decarboxylated by BCDH gener-
ating CoA-activated primers used in the synthesis of branched-chain
fatty acids (Perham, 2000). GCS catalyses the reversible decarbox-
ylation of glycine with release of ammonia and methylene groups.
Methylene groups are transferred to tetrahydrofolate, generating
5
,10-methylene-tetrahydrofolate involved in the synthesis of amino
acids and nucleotides (Douce et al., 2001). In addition, the de-
carboxylations described above generate NADH, which can be used
in oxidative phosphorylation.
The eukaryotic dehydrogenase complexes are localized in the
mitochondrial matrix and are composed of multiple copies of each
of three enzymatic subunits referred to as E1 (decarboxylase), E2
(
acyl transferase), and E3 (dihydrolipoamide dehydrogenase;
DHLDH). Most eukaryotic PDHs contain a fourth subunit (E3Bp),
that acts as a linker between E3 and the E2 multimer. LA is cova-
6
lently attached to the N amino group of a lysyl residue in the lipoyl
domain of E2 and to conserved lysyl moieties of E3Bp (Perham,
It was recently found that the interference of DHLDH expression,
which affects the recycling of LA, had a strong proliferation defect
in T. brucei followed by rapid cell death (Roldan et al., 2011).
However, no data about the effect of inhibition on LA synthesis or
protein lipoylation are available.
The aim of this work is to validate LA metabolism as a drug
target against T. cruzi. We show here a chemical approach, by using
LA analogues, to study the relative importance of LA biosynthesis
and LA salvage in this organism.
2
000). The subunits of GCS are named P (glycine decarboxylase),
H, T, and L proteins. LA is covalently bound to a lysyl moiety of the H
protein, which does not have catalytic activity but acts as a scaffold
to protect the unstable intermediate during transfer to the T pro-
tein, which catalyses the release of ammonia from methyleneamine
and the transfer of the methylene group to tetrahydrofolate (Douce
et al., 2001). L protein is the DHLDH that regenerates lipoamide;
most organisms share the same DHLDH as E3 or L protein in both 2-
ketoacid dehydrogenase complexes and GCS.
LA plays an essential role in the catalytic activity of these
complexes and any intervention with its synthesis or regeneration
would probably lead to a general deleterious effect in the cell. This
feature heightens its value as a chemotherapeutic target. As LA
metabolism has not been studied in detail in parasitic organisms
like trypanosomatids (Spalding and Prigge, 2010), it is our interest
to evaluate and validate it as a putative target for drug discovery.
Trypanosomatids are flagellated protists belonging to the Kineto-
plastida, grouping species like Trypanosoma brucei and Trypano-
soma cruzi, the causative agents of sleeping sickness and Chagas
disease, respectively (Barrett et al., 2003). These are considered
neglected diseases with elevated morbidity and mortality if not
treated. The repertoire of available treatments is limited and most
of the drugs used are toxic and, in some cases, ineffective, requiring
urgent development of new chemotherapies.
2. Materials and methods
2.1. Parasite culture and growth inhibition assays
Epimastigotes of T. cruzi CL Brener and Dm28c strains were
grown in LIT medium at 28 C and the culture medium was sup-
plemented with 10% fetal bovine serum. When indicated, modified
LIT medium (mLIT) was used, containing 0.4 g/l of glucose instead
of the regular amount (4 g/l) (Camargo, 1964). Growth curves were
obtained by direct observation and cell counting in a Neubauer
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6
haemocytometer, starting from a parasite density of 1 ꢂ 10 cells/
ml. To study the effect of the LA analogues 8-bromo-octanoic acid
(BrO) and methyl-8-bromo-octanoic acid (MBrO) (Fig. 1), parasites
6
were seeded in 24 well plates at 1 ꢂ 10 cells/ml and compounds
were added at increasing concentrations. Solvent (DMSO) was al-
LA metabolism has been described in detail only in some model
organisms (Cronan, 2016). Escherichia coli for instance, exhibits the
simplest route involving the transfer of an octanoyl moiety from
octanoyl-acyl carrier protein (octanoyl-ACP) to E2 and H protein by
LipB (octanoyl transferase). Subsequently, LipA (lipoate synthase)
inserts two sulfur atoms into the octanoyl moiety giving the dithio-
lane ring of the lipoyl moiety. E. coli is also able to scavenge LA; the
lipoate ligase LplA uses free LA to acylate E2 and H protein. Bacillus
ways at a final concentration of 0.5% (v/v), including the control.
Plates were incubated at 28 C. EC50 values were calculated by non-
linear regression analysis using SigmaPlot (v 11.0). All experiments
were done in triplicate with appropriate controls in each case.
ꢁ
2.2. Synthesis of methyl-8-bromo-octanoic acid
Fifty
mg of BrO (Sigma) were dissolved in 2 ml of freshly