Z.-Y. Yang et al. / Process Biochemistry 46 (2011) 182–187
2.5. Fermentation of E. coli BL21(DE3)/pET-dam in 5-L and 100-L bioreactors
183
strains, a mild, cost-effective, and environmentally friendly proce-
dure for the conversion of R,S-DMCPCN to S-DMCPCA via a two-step
biotransformation process was established.
Here, we report the hetero-expression of R-specific amidase
gene (dam) from D. tsuruhatensis in E. coli and the industrial process
for the production of S-DMCPCA using this recombinant amidase.
Fermentation was carried out in 5- and 100-L bioreactors (Bioengineering AG).
A single colony of E. coli BL21(DE3)/pET-dam strain was inoculated into 5 mL LB with
30 g/mL kanamycin in a 15-mL tube and was incubated at 37 ◦C in a reciprocator.
After overnight cultivation, 1 mL of the cells was inoculated into 60 mL of LB broth
with 30 g/mL kanamycin in a 500-mL flask. When the OD600 reached 0.8–1.0, 17 mL
of the culture was transferred into 3.5 L of 2× YT medium (1% yeast extract, 1.6%
tryptone, and 0.5% NaCl) in a 5-L fermentor. The fermentation was performed at 37 ◦C
for 1–2 h until OD600 reached about 1. Then the culture was induced by lowering the
temperature to 22 ◦C and adding 35 g of lactose. Two hours later, 17.5 g of lactose was
added for the secondary induction. The aeration rate was maintained at 1.3 VVM. An
agitation cascade was selected to maintain the dissolved oxygen (DO) concentration
at above 20% through automatic adjustment of the agitation speed between 300 and
700 rpm. Two-microliter samples were taken at regular intervals, 1 mL was used for
OD600 determination and the remainder was used for enzyme activity assay.
The procedure for the 100-L fermentation was similar to that of the 5-L fermen-
tation with the exception that 300 mL of culture with an OD600 of 0.8–1.0 was used
to inoculate 60 L of 2× YT medium in the 100-L fermentor.
2. Materials and methods
2.1. Bacterial strains, plasmids, and enzymes
D. tsuruhatensis CCTCC M 205114 was provided by Professor Yuguo Zheng (Zhe-
jiang University of Technology) [14]. D. tsuruhatensis CCTCC M 205114 was cultured
at 30 ◦C, 150 rpm for 24 h in a 250-mL Erlenmeyer flask containing 40 mL of medium
(pH 7.5) that consisted of (per liter) 8.4 g of glucose, 3.56 g of acetamide, 7.0 g of yeast
extract, 0.7 g of peptone, 1 g of NaCl, 1 g of KH2PO4, and 1 g of K2HPO4. For fermen-
tation in a 5-L bioreactor (Bioengineering AG), 3.5 L of medium was inoculated with
200 mL of flask culture of D. tsuruhatensis. The fermentation was performed at 30 ◦C
with aeration rate of 1.0 VVM. Agitation cascade was selected to maintain the dis-
solved oxygen (DO) concentration at above 20% through automatic adjustment of
the agitation speed between 300 and 500 rpm.
Fermentation broth from the 100-L fermentor was then harvested by centrifu-
gation (continuous flow) at 10,000 × g and flow rate of 50 L/h. Cells were stored at
−20 ◦C or used fresh.
Pyrobest DNA polymerase, Blunting Kination Ligation Kit (including pUC118
Hinc II/BAP vector), and restriction enzymes were purchased from Takara (Dalian,
China). Plasmid pET24a and E. coli strain BL21 (DE3) were purchased from Novagen.
Gene sequencing was conducted by Shanghai Sangon Biotech Co. Ltd. All other
reagents were analytical grade commercial products from standard suppliers.
2.6. Production of S-DMCPCA with E. coli BL21(DE3)/pET-dam
One kilogram of E. coli BL21(DE3)/pET-dam cells was suspended in 3 L of water,
and the mixture was homogenized at 15,000 bar for three times (Avestin EmulsiFlex-
C55, Canada). Then, the homogenized solution was centrifuged at 12,000 × g for
20 min (Hitachi, Japan), and the supernatant was used for S-DMCPCA production.
The resolution of R,S-DMCPCA was performed in a 15,000-L tank. Sixty kilograms of
R,S-DMCPCA (Zhejiang Hisun Pharmaceutical, Taizhou, China) was added to 10,000 L
of water. The temperature of the solution was then maintained at 35 ◦C using a
coil pipe, and the pH was maintained at 7.0 with 1 mol/L NaOH and 1 mol/L HCl.
The reaction was initiated by adding homogenized E. coli BL21(DE3)/pET-dam cell
extract with agitation speed of 100 rpm. Samples were taken every 2 h and analyzed
by HPLC or GC.
When the reaction was completed, the pH of the reaction solution was adjusted
to 10.5 with 2N NaOH. The solution was then loaded onto 1.0 m3 of HZ801 adsorbent
resin (Shanghai Huazhen Sci & Tech Co., Ltd., China). After washing with 1 m3 of
water, the adsorbed S-DMCPCA was eluted with 2 m3 of 80% acetone. The eluate was
concentrated at 60 ◦C under vacuum, and then cooled to 4 ◦C to allow crystallizing
overnight. Then product was obtained after filtration and washing with water.
2.2. Cloning and DNA sequencing of dam gene
The genomic DNA of D. tsuruhatensis CCTCC
M 205114 was used as
the template. Cells were harvested in the late log phase from the culture
medium at 30 ◦C for 24 h, and genomic DNA was extracted. The dam gene
was PCR amplified by Pyrobest DNA polymerase using
2
primers: DAM1, 5ꢀ-
TCTCATATGATGAACGACAGCGAACTGCACCATCTCGAACT-3ꢀ (forward); and DAM2,
5ꢀ-CTAGAATTCTCAGGCAGCAGGGTGCTGTCTGTGCCAGT-3ꢀ (reverse). PCR amplifica-
tion program consists of 30 cycles at 94 ◦C for 45 s, 58 ◦C for 45 s, and 72 ◦C for 2 min.
The PCR product was electrophoresed on a 0.8% agarose gel and the 1.4-kb fragment
was purified using a gel extraction kit (Watson Biotechnologies, Shanghai). The puri-
fied dam gene fragment was ligated into pUC118-Hinc II/BAP vector using T4 DNA
ligase and then transformed into E. coli DH5␣-competent cells. Positive clones were
selected using the blue/white screening method. The cloned DNA was sequenced by
Shanghai Sangon Biotech Co. Ltd. This subcloned plasmid was named pUC-dam.
2.7. Analytical methods
The amounts of amide and the corresponding acid were assayed by HPLC
using an Agilent 1100 HPLC system. The column was a C18 reversed-phase col-
umn Hypersil ODS2, and the column temperature was 40 ◦C. The mobile phase was
50% 50 mmol/L sodium phosphate buffer (pH 3.0) and 50% methanol, and the flow
rate was 0.5 mL/min. The detection wavelength was 210 nm. Samples were diluted
5–10 times with the mobile phase and then centrifuged at 18,800 × g for 2 min, and
the supernatant was used for injection.
The ee value of DMCPCA in the reaction solution was analyzed with Agilent
6890 GC system equipped with a flame ionization detector and an enantioselec-
tive capillary column BGB-175 (BGB Analytik, Switzerland). Helium was used as the
carrier gas at a flow rate of 1.6 mL/min and the column temperature was 170 ◦C.
Samples were extracted with an equal volume of ethyl acetate after centrifugation
at 18,800 × g for 2 min, and the supernatant layer was dried over anhydrous Na2SO4
before injection. The retention time of S-DMCPCA and R-DMCPCA was 6.19 and
6.32 min, respectively.
2.3. Expression of D. tsuruhatensis dam gene in E. coli
The pUC-dam plasmid and pET24a vector were digested with NdeI and EcoRI.
The digested products were separated on a 0.8% agarose gel and the 1.4-kb band
containing the dam gene and 5.3-kb band of the digested pET24a vector were
purified using a gel extraction kit. These two fragments were ligated with T4
DNA ligase and then transformed into E. coli BL21(DE3)-competent cells. Positive
clones were selected on LB agar plate supplemented with 30 g/mL kanamycin,
and confirmed by digestion with NdeI and EcoRI. The resulted plasmid was named
pET-dam. A positive E. coli BL21(DE3)/pET-dam colony was selected and incubated
in 50 mL Luria–Bertani (LB) medium (0.5% yeast extract, 1.0% tryptone, and 0.5%
NaCl) containing 30 g/mL kanamycin in a 250-mL Erlenmeyer flask with shaking
at 200 rpm and 37 ◦C. When OD600 reached 0.6, a final concentration of 1 mM of
isopropyl-1-thio--D-galactopyranoside (IPTG) was added for induction. Follow-
ing a 3-h induction period, the cells were centrifuged and the pellet was washed
with resuspension buffer (20 mM Tris–HCl, pH 7.5). The cells were then disrupted
by sonication, and the supernatant fraction was recovered by centrifugation at
14,000 × g for 30 min at 4 ◦C. The supernatant was subjected to sodium dodecyl
sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) analysis.
3. Results and discussion
3.1. Cloning and sequence analysis of the dam gene
The dam gene was amplified from D. tsuruhatensis CCTCC M
205114 by PCR. Primers were designed according to the upstream
and downstream sequences of the putative amidase gene of Delf-
tsuruhatensis CCTCC M 205114 amidase (HM165184), D. acidovo-
rans SPH-1 putative amidase (CP000884.1), and D. acidovorans D
amino acid amidase (AB154822.1) with amidase from C. acidovo-
rans A:18 [11] revealed high sequence identity. The gene sequences
of D. tsuruhatensis CCTCC M 205114 amidase and D. acidovorans
SPH-1 putative amidase were 100% identical. The identity between
2.4. Enzyme activity assay
Amidase activity was assayed using racemic 2,2-dimethylcyclopropane car-
boxamide as the substrate. One milliliter of fermentation broth was centrifuged,
resuspended in 1 mL of 50 mM potassium phosphate buffer (pH 7.0), and then mixed
with 3 mL of 50 mM potassium phosphate buffer (pH 7.0) containing 70 mmol/L R,S-
DMCPCA. The reaction mixture was incubated at 35 ◦C for 10 min in a shaker with
a rotation speed of 150 rpm. The reaction was stopped by addition of 4 volumes of
HPLC mobile phase (see Section 2.6). After centrifugation at 12,000 × g for 2 min, the
supernatant was collected and analyzed by high-performance liquid chromatogra-
phy (HPLC). One unit of amidase activity was defined as the amount of cells required
to liberate the equivalent of 1 mol of 2,2-dimethylcyclopropane carboxylic acid per
min at 35 ◦C and pH 7.0.