Synthesis of 3′,4′-Anhydroadenosylcobalamin
J. Am. Chem. Soc., Vol. 122, No. 37, 2000 8809
using the molar extinction coefficient of adenosine, 14,700 M 1cm-1
-
.
Expression and Purification of ATP:Corrinoid Adenosyltrans-
ferase. An Escherichia coli overproducing strain JE2875 from a pT7-7
plasmid in BL21(DE3) cells was a generous gift of Prof. J. C. Escalante-
Semerena, University of Wisconsin-Madison. Cells were grown in LB
media, induced by 0.5 mM IPTG and harvested 6 h after induction.
CobA was purified as described elsewhere. The purified enzyme was
precipitated by ammonium sulfate (70% saturation), resuspended in
anaerobic Tris buffer (50 mM, pH 8), frozen and stored at -70 C.
Synthesis of 3′,4′-anAdoCbl. A 50 mL solution containing 0.2 mM
1
The total yield was g90%. H NMR (400 MHz in d
6
-DMSO) for 5′-
TEMPO-3′,4′-anhydroadeosine: δ 8.16 (s, 1 H, H-2 or H-8); δ 8.12
(s, 1 H, H-2 or H-8), δ 7.33 (s, 2 H, NH ), δ 6.26 (d, 1 H, H-1′, J )
2.5 Hz), δ 5.36 (d, 1 H, H-3′, J ) 2.5 Hz), δ 5.15 (t, 1 H, H-2′, J )
2.5 Hz), δ 4.34 (ABq, 2 H, H-5′ , J ) 13 Hz, the inner lines are almost
fully collapsed, and the outer lines are only ∼5% of the intensity of
the middle line), δ 1.25-1.53 (m, 6 H, TEMPO CH ’s), δ 1.13 (s, 6
H, TEMPO CH ’s), δ 1.05 (s, 3 H, TEMPO CH ), δ 1.03 (s, TEMPO
). H NMR for 3′-TEMPO-4′,5′-anhydroadenosine: δ 8.27 (s, 1
H, H-2 or H-8), δ 8.17 (s, 1 H, H-2 or H-8), δ 7.32 (s, 2 H, NH ), δ
6.04 (d, 1 H, H-1′, J ) 4.5 Hz), δ 4.95 (t, 1 H, H-2′, J ) 4.5 Hz), δ
4.73 (d, 1 H, H-3′, J ) 4.5 Hz), δ 4.53 (s, 1 H, H-5′ ), δ 4.42 (s, 1 H,
H-5′ ), δ 1.42 (s, 6 H, TEMPO CH ’s), δ 1.22 (s, 3 H, TEMPO CH ),
δ 1.17 (s, 3 H, TEMPO CH ), δ 0.97-1.27 (m, 6 H, TEMPO CH ’s).
2
27
2
2
3
3
1
3
′,4′-anhydroATP, 0.17 mM OH-cobalamin, 1.5 mM MgCl2, 0.5 mM
CoCl , and 50 mM Tris‚HCl at pH 8 was deoxygenated under a stream
of argon for 1 h. The sealed flask was transferred to a Coy anaerobic
chamber, and 20 mg of KBH was added to reduce cob(III)alamin to
CH
3
2
2
4
a
cob(I)alamin. The reaction was started by the addition of 20 mg of
CobA, and its progress was monitored spectrophotometrically at 530
nm. After a 2 h incubation, the reaction mixture was cooled on ice and
transferred to an Amicon pressure cell with a YM10 membrane. The
protein was separated from the cobalamins and smaller molecules by
this ultrafiltration method, and the filtrate was collected in a sealed
flask under argon. The filtrate was subjected to a second ultrafiltration
step using a YM1 membrane. This removed salts, and the retentate
containing the product was collected, frozen, and stored in liquid
nitrogen.
b
3
3
3
2
Enzyme Assays. Samples of EAL and DDH from Salmonella
typhimurium were gifts from Dr. Vahe Bandarian and Dr. Andreas
Abend, respectively. The enzymes were purified as described else-
29,30
where.
Since the product of both reactions is acetaldehyde, a coupled
assay using yeast alcohol dehydrogenase (yADH) was employed.
Assays with EAL contained 50 mM Hepes, pH 7.5, 10 mM ethano-
lamine, 0.15 mM NADH, 45 IU yADH, 20 µM AdoCbl or 3′,4′-
anAdoCbl and the appropriate amount of EAL. Assays with DDH
i
, pH 8, 125 mM propanediol, 23 mM Na-cholate,
.15 mM NADH, 45 IU yADH, 20 µM AdoCbl or 3′,4′-anAdoCbl
Photolysis. Anaerobic samples of AdoCbl and 3′,4′-anAdoCbl were
prepared in the anaerobic chamber using solutions that were deoxy-
genated with O free Argon. Aerobic samples were prepared using
2
contained 100 mM KP
0
and the appropriate amount of DDH. Assays were performed at 25 °C.
distilled water. Concentration of cobalamins was approximately 50 µM
in each case. Samples in quartz cuvettes, fitted with Teflon stoppers,
were kept on ice and irradiated with a 150 W tungsten lamp at a distance
of 50 cm. At designated time points UV-vis spectra were aquired on
a Hewlett-Packard, model 8452, diode array spectrophotometer.
Anaerobic samples were monitored for cob(II)alamin formation by the
decrease in absorbance at 525 nm, while aerobic samples were
monitored for cob(III)alamin formation by increase in absorbance at
Results and Discussion
(A) Synthesis and Purification of 3′,4′-anAdoCbl. The
ATP:corrinoid adenosyltransferase (cobA) catalyzes the alkyl-
ation of the strong nucleophile, cob(I) alamin (B12s) by the 5′-
carbon af ATP to produce AdoCbl and tripolyphosphate.27 We
used this enzymatic reaction with 3′,4′-anhydroATP and B12s
as substrates to make 3′,4′-anAdoCbl. The reaction was carried
out under strict anaerobic conditions in an anaerobic chamber
since B12s formed by reduction of cob(III)alamin is highly
susceptible to oxygen. With a slight excess of 3′,4′-anATP the
reaction proceeded to completion, as measured by the increase
3
55 nm. Samples with TEMPO contained 20-fold excess (1 mM) of
the radical trap. First-order rate constants (kobs) where determined by
fitting the data to a single-exponential equation (eq 1) using Kaleida-
graph, where A is the absorbance at time t, A is the initial absorbance,
t o
and ∆A is the difference between the final and initial absorbance.
3
1
in absorbance at 530 nm. It became apparent that the AdoCbl
analogue was very labile and sensitive toward oxygen, which
made purification of the compound a daunting process. All
conventional chromatographic procedures were unsuccessful due
to degradation of the product (also see ref 31). It appears that
interaction of the compound with any resin leads to decom-
positon through cleavage of the Co-C bond, since cob(II)alamin
is the only corrinoid species detected. With this restriction in
mind we used ultrafiltration to partially purify the compound.
Use of a YM 10 membrane separates the protein catalyst from
the rest of the reaction mixture. Partial separation of small
molecules from the product was done using a 1000 molecular
weight cutoff membrane, which serves to concentrate the
product while removing salts and smaller molecules. Care has
At ) ∆A[(1 - exp(-kobst))] + Ao
(1)
Thermolysis Kinetics. Samples for kinetic runs were prepared on
ice in the anaerobic chamber and put into Teflon-stoppered quartz
cuvettes. Samples contained 55 µM 3′,4′-anAdoCbl and 2 mM TEMPO
g30 equiv) in anaerobic ethylene glycol. Samples were transferred to
a circulating water bath (Fisher Scientific), thermally equilibrated for
min and incubated at the desired temperature. At designated time
(
2
points, the cuvettes were quickly removed from the water bath and
spectra acquired. Thermal equilibration was tested in control samples,
and data points were excluded if they did not meet the criteria suggested
2
8
by Brown and Evans. Kinetic runs were measured at 4 °C intervals
between 12 and 32 °C ((0.1 °C) by monitoring the decrease in
absorbance at 530 nm. First-order rate constants were determined by
single-exponential fits as described above. All fits gave correlation
2
coefficients of R ) 0.9998 or better.
Nucleoside Products. Approximately 7 µmol of 3′,4′-anAdoCbl and
5 µmol of TEMPO were incubated at 25 °C in 20 mL of Argon flushed
water for 2 h. The solution was concentrated by rotary evaporation
and analyzed by HPLC using a C18 column (Phenomenex, 250 × 10
mm). A linear gradient of 40% to 100% MeOH in 40 min was
employed. Two compounds eluting at 31 and 33 min were characterized
by NMR spectroscopy as 3′-TEMPO-4′,5′-anhydroadenosine (1.1 µmol)
and 5′-TEMPO-3′,4′-anhydroadenosine (5.3 µmol), respectively. The
yield of each compound was estimated by the absorbance at 260 nm
(31) Formation of 3′,4′-anAdoCbl can also be detected by HPLC using
a C18 column with a H2O/MeOH gradient containing 0.02% TFA. The
analogue has a similar retention time as authentic AdoCbl (18 min) and
can easily be separated from other corrinoid species (B12a, etc.). However,
partial degradation of the compound occurs on the column, since a
substantial amount of B12a is also eluted (11 min). Under the acidic elution
conditions, 3′,4′-anAdoCbl is in the base-off form due to protonation of
the lower axial DMB ligand. By using an HPLC system with a diode-array
detector, we were able to show that the peak eluting in ∼18 min is that of
a base-off 3′,4′-anAdoCbl by comparison to a base-off spectrum of authentic
AdoCbl (data not shown). The base-off cobalamin appears to be very labile
as well as the base-on species. Absorption spectra acquired of the eluted
peak revealed partial degradation to a mixture of aquo-cob(III)alamin and
base-off 3′,4′-anAdoCbl (data not shown). This observation implies that
purification of the base-off species could be very difficult, a suggestion
that came up during the review of this paper.
2
(
25.
(
(
(
27) Suh, S. J.; Escalante-Semerena, J. C. J. Bacteriol. 1995, 177, 921-
9
28) Brown, K. L.; Evans, D. R. Inorg. Chem. 1994, 33, 6380-6387.
29) Bandarian, V.; Reed, G. H. Biochemistry 1999, 38, 12394-12402.
30) Abend, A.; Nitsczhe, R.; Bandarian, V.; Stupperich, E.; Retey, J.
(32) Giannotti, C. In B12; Dolphin, D., Ed.; Wiley-Interscience: New
York, 1982; Vol. 1, pp 393-430.
Angew. Chem., Int. Ed. 1998, 37, 625-627.