Journal of the American Chemical Society
Article
imaginary channels (quadrature detection). Time traces were
recorded over a range of magnetic fields to give 2D spectra. Spectra
were processed by first subtracting the signal prior to the laser pulse
for each kinetic trace (at a given magnetic field point), and then
subtracting the signal average at off-resonance magnetic field points
from the spectra obtained at a given time.
shown in Scheme 1 was used to attach TEMPO to the 5-
ethynyluracil base.40 The DNA hairpin was then cleaved from
the solid support and subsequently purified by reverse phase
C-18 HPLC. The purity of the hairpins was confirmed via
MALDI-TOF spectroscopy (Table S1) and steady state UV−
vis spectroscopy (Figures S1). In addition, assembly of the
duplexes into B-form DNA was confirmed by circular
Pulse-EPR. Measurements were performed at both X-band and Q-
band. Field swept electron echo experiments were performed at X-
band and Q-band with a 200 ns delay between the laser flash and the
π/2 pulse. At X-band, the π/2 and π pulse lengths were 16 and 32 ns,
respectively, separated by a time τ = 200 ns. The light and dark signals
were collected with separate back-to-back scans, and the difference
between the spectra gave the light-dark (L-D) signal. At Q-band the
π/2 and π pulse lengths were 40 and 80 ns, respectively, separated by
a time τ = 200 ns. A four-step phase cycle was used, and a “dark” pulse
sequence and detection was performed 50 ms after each laser flash
(run at 10 Hz). This allowed for the collection of a light and dark
signal in a single scan. Signals were detected in quadrature and phased
to give absorptive signals (of stable radicals) in the real channel and
derivative signals in the imaginary channel. The dark signal, which
shows the presence of a stable radical impurity, was subtracted from
the light signal to give the photogenerated field swept echo. The echo
was integrated at every field point to give echo intensity vs field. Out-
of-phase electron spin echo envelope modulation (OOP-ESEEM)
experiments were performed at X-band.43−45 The parameters were the
same as the field swept electron echo experiment, except that the time,
τ, was increased incrementally between the π/2 and π pulses.
Charge Transfer Dynamics. The charge transfer dynam-
ics following photoexcitation were explored with TA spectros-
copy to ascertain how the inclusion of TEMPO affects these
dynamics. NDI-A3G1A2 and NDI-A3G1-Sd were used as the
reference hairpins for series 1 and 2, respectively. Following
selective photoexcitation of NDI, the TA spectra (Figures 2,
S3, and S5) all show absorption features characteristic of
NDI•− at 480 and 610 nm, which appear within the ∼300 fs
instrument response function.47 There is no evidence of
48
3
1
significant *NDI formation from *NDI. The features for
the A-tract polaron and G•+ are too weak to spectrally identify
but tracking the time evolution of NDI•− is sufficient to
determine the NDI•−-G•+ lifetimes.49 For structure 2A, the
characteristic Sd•+ radical cation feature at 530 nm was
observed in addition to the same spectral NDI features as seen
We compare the charge recombination time constants
between the hairpins with and without TEMPO to determine
if its presence alters the SQP dynamics. The charge
recombination lifetimes were determined by fitting the decay
of the NDI•− peak with a triexponential function (Table 1).
The first time constant, τ1 ≅ 3 ps, is assigned to recombination
of the initial contact SQP comprising NDI•− and the
neighboring A•+. The second time constant (τ2) is assigned
to recombination of the delocalized hole within the A-tract,
and the third time constant (τ3) is attributed to recombination
from G•+.31 Comparing these dynamics to the NDI-A3G1A2
control compound for series 1, we observe that charge
recombination occurs on similar time scales for these three
processes. Approximately the same dynamics are observed for
2A and NDI-A3G1-Sd with the addition of a longer
component, τ4, which is assigned to recombination of
NDI•−-Sd•+. The charge recombination time for NDI-A3-G1-
Sd is faster than that of 2A, which may result from structural
distortion of the hairpin caused by the attached TEMPO, as
evidenced by the circular dichroism (Figure S2) and EPR data
(see below). On the basis of the Marcus-Levich-Jortner model,
the charge recombination rate is directly proportional to the
square of the electronic coupling matrix element, which is
affected by structural distortion.47 Thus, even a small change in
coupling can impact the observed charge recombination rates.
Overall, these results demonstrate that the attachment of
TEMPO to the DNA hairpin does not significantly alter the
charge transfer dynamics of the series 1 systems and increases
all the charge recombination times for 2A by less than a factor
of 2. This suggests that any differences observed in the EPR
spectra are due, in large part, to spin dynamics and not
differences in the charge transfer/population dynamics.
RESULTS AND DISCUSSION
■
DNA Hairpin Design. Previous work on the DNA hairpin
NDI-A3G1A2 in Figure 1 has shown that photoexcitation of
NDI with a 355 nm laser pulse leads to hole injection into the
A3 sequence followed by hole trapping at guanine in 20% yield
to produce NDI•−-A3-G1•+-A2, which has slow charge
recombination dynamics.31,39,46 Series 1 is designed to probe
how distance affects the interaction between the spins of the
TEMPO radical and G•+ in the NDI•−-G•+ SQP.31 Series 2
utilizes Sd as the hole acceptor because Sd is much easier to
oxidize than G, leading to higher charge separation yields and
longer SQP lifetimes, which increase EPR signal intensities and
allow for implementation of pulse-EPR techniques.31 The
sequences were synthesized using standard solid-phase
oligonucleotide synthetic procedures (see SI).
In order to incorporate TEMPO into the DNA structure, we
used a postsynthetic modification strategy. A commercially
available synthetic base, 5-ethynyl-2’deoxyuridine (Scheme 1),
was incorporated into the structures during the standard
oligonucleotide synthesis. The click chemistry reaction scheme
Scheme 1. Click Chemistry Reaction Scheme Utilized to
Attach TEMPO to Ethynyluridine, Showing Only the
Nucleobase Involved in the Reaction
Spin Dynamics. We next probed the spin dynamics to see
the effect of the TEMPO electron spin on the SQP in each
structure using several different EPR methods. Continuous
wave (CW) EPR spectroscopy without photoexcitation
confirmed the presence of TEMPO in all hairpins (Figure
S6). Transient continuous wave (TCW) EPR spectroscopy
was used to obtain time-resolved spectra of the photogenerated
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J. Am. Chem. Soc. 2021, 143, 4625−4632