Organic Process Research & Development
100 mm) with mobile phases A (0.2% H PO and 40 mM
Communication
×
NMR (CD Cl , 500 MHz) δ: 8.24 (s, 2H), 0.77 (s, 4H), 0.24
3
4
2
2
NH PF in water) and B (acetonitrile). Detection was at 220
(s, 12H).
4
6
nm, flow was set at 1.0 mL/min, and the temperature was 20
C (Run time: 8.5 min). Gradient: 0 min, A = 98%, B = 2%; 2.5
min, A = 98%, B = 2%; 5.5 min, A = 5%, B = 95%; 8.5 min, A =
%, B = 95%.
-(4,4,5,5-Tetramethyl-1,3,2-dioxaborolan-2-yl)-
Bis-silylation Using TMSCl (5-Bromo-N,N-bis-
(trimethylsilyl)pyrimidin-2-amine) (4). To a clean, dry,
nitrogen-interted 2 L multineck jacketed reactor equipped with
a reflux condenser and gas bubbler was charged 2-amino-5-
bromopyrimidine 2 (50.0 g, 100 wt %, 287.35 mmol). The
reactor was evacuated and purged with nitrogen. THF (500
mL) was charged to get beige color suspension followed by i-
PrOH (1.6 mL, 20.11 mmol, 7 mol %) at 20−23 °C. Sodium
hydride (60% dispersed in mineral oil, 13.79 g, 344.83 mmol,
1.2 equiv) was charged to above mixture at once (Caution!!
exotherm to 35−40 °C with gas evolution!). The resulting
suspension was stirred for additional 1 h at 40 °C. Then the
slurry was cooled to 20 °C, and TMSCl (37.46 g, 344.83 mmol,
1.2 equiv) was charged slowly over 15 min keeping the internal
temperature under 30 °C. The resulting mixture was stirred for
additional 1 h after which the batch was cooled to 20 °C.
Second portion of sodium hydride (60% dispersed in mineral
oil, 12.64 g, 316.09 mmol, 1.1 equiv) was charged to the above
mixture at 20 °C (Caution!! Slow exotherm to 30−35 °C with
gas evolution!) and held at 40 °C for additional 1h before it was
recooled back to 20 °C. TMSCl (34.34 g, 316.09 mmol, 1.1
equiv) was charged slowly over 15 min keeping the internal
temperature under 30 °C. The final slurry was stirred at 20 °C
for additional 2 h after which an aliquot was tested for bis-
silylation (0.1 mL aliquot was concentrated using Rotovap,
°
5
5
pyrimidin-2-amine (1a). To a clean, dry, nitrogen-inerted
suitable reactor were charged 2-amino-5-bromopyrimidine 2
(15.0 kg, 100 wt %, 86.2 mol), bis(pinacolato)diboron (24.2 kg,
9
5.3 mol), di-tert-butylphosphinoferrocene tetrafluoroborate
(
(
0.072 kg, 0.2 mol %), tris(dibenzylidineacetone)palladium
0.080 kg, 0.1 mol %), and potassium acetate (16.92 kg, 172.4
mol). The reactor was evacuated and purged with nitrogen
three times. In a separate vessel, 2-MeTHF (60 kg) was sparged
with nitrogen and then transferred to the main reactor. The
mixture was heated to 82 °C over 0.5 h and held at 82 °C for
4.5 h (slurry forms). The mixture was cooled to 55 °C, and
THF (200 kg) was added and then reheated back to 60 °C.
The solution was filtered at 60 °C to remove solids, ensuring
both filter and the receiver were heated to 60 °C. THF (67 kg)
heated to 60 °C was used to rinse the reactor and filtered solids.
The combined filtrates were distilled at ∼55 °C under vacuum
(274 Torr) to the minimum stirrable volume. Ethanol (90 kg)
was added, and the mixture was again concentrated to
minimum volume. Ethanol (240 kg) was added, and the
mixture was heated to 65 °C and held for 1 h. The ethanol
solution was then filtered through a heated (65 °C) filter
containing CUNO type 5 carbon. The reactor and filter were
rinsed with preheated (60 °C) ethanol (24 kg). The combined
filtrates were placed in a clean reactor and were concentrated at
1
diluted in CD Cl , and filtered to remove inorganics. H NMR
2
2
analysis of the filtrate indicated >95% bis-silylation inter-
1
mediate). H NMR (CD Cl , 400 MHz) δ: 8.23 (s, 2H), 0.15
2
2
(s, 18H). The crude reaction mixture of bis-silylated adduct 4
was directly used in next borylation step.
(2-Aminopyrimidin-5-yl)boronic Acid (1b). Borylation.
THF (150 mL) was charged to crude adduct 4 solution, and
6
0 °C under vacuum removing 260 L of distillate. The resulting
slurry was cooled to 20 °C over 2 h and then held at 20 °C for
h. The solids were collected by filtration and were rinsed with
2
ethanol (36 kg). The solids were dried on the filter for 1 h and
then in a vacuum oven at 45 °C for 8 h yielding 15 kg of 1a as a
the batch was cooled to −78 °C. B(Oi-Pr) (81.08 g, 431.12
3
mmol, 1.5 equiv) was charged to above mixture over 15 min
and cooled the mixture to −78 °C. n-BuLi (2.5 M in hexanes,
167 mL, 416.74 mmol, 1.45 equiv) was charged to above
mixture over 75 min keeping the internal temperature below
−65 °C and held at this temperature for additional 1 h after
which by HPLC the starting material was consumed (>99%
conversion). The batch was warmed up to 0 °C over 1 h and
quenched with 12 N HCl solution (20 mL, 240 mmol, 0.84
equiv) to adjust the pH ∼ 9 followed by water (500 mL). The
resulting biphasic layers were concentrated under vacuum
(temp. 45−50 °C) to distill approximately 700 mL of distillate.
Then 12 N HCl solution (45 mL, 540 mmol, 1.88 equiv) was
charged to adjust pH ∼ 1−1.5 at 20 °C. Water (600 mL),
heptane (175 mL), and ethyl acetate (175 mL) were charged to
above cloudy suspension and stirred vigorously for 30 min at 25
°C. The bottom aqueous layer containing product was
separated from the top organic layer (Note: The top organic
layer contained all nonpolar impurities and remaining bromide
2). The bottom aqueous layer containing boronic acid was
transferred into a clean reactor (Note: Same previous reactor
could be utilized after the rinse using ethyl acetate and water).
To the aqueous layer was charged 30 wt % aqueous NaOH
solution (60 mL) slowly over 90 min to adjust the pH 5.5−6 to
afford white slurry. The resulting slurry was stirred at 20 °C for
additional 1h after which the solids were collected by suction
filtration and rinsed with water (100 mL). The solids were
dried on funnel for 1h and then in a vacuum oven at 25 °C for
≥12 h yielding 40.2 g of 1b (82% yield, 81.6 wt %). Reslurry:
white crystalline solid (80% yield, 98 wt %, Pd 2 ppm). MP 212
1
°
C. H NMR (CDCl , 500 MHz) δ: 8.59 (s, 1H), 5.69 (s, 2H),
3
13
1
8
2
.33 (s, 12H). C NMR (CDCl , 125 MHz) δ: 164.87, 164.36,
4.08, 24.99. HRMS: [C H BN O + H ]: calculated
3
+
1
0
16
3
2
22.1408, found 222.1399.
-Bromo-2-(2,2,5,5-tetramethyl-1,2,5-azadisilolidin-1-
5
yl)pyrimidine (3). To a clean, dry, nitrogen-interted 250 mL
three-neck round-bottom flask were charged 2-amino-5-
bromopyrimidine 2 (10.0 g, 100 wt %, 57.47 mmol) and 1,2-
bis(chlorodimethylsilyl)ethane (12.37 g, 57.47 mmol). The
flask was evacuated and purged with nitrogen. THF (50 mL)
was charged to the flask, and the resulting mixture was cooled
to −10 °C using ice/brine bath. 1 M LiHMDS/toluene (126.44
mL, 126.44 mmol, 2.2 equiv) was charged to above mixture
while keeping the internal temperature below 0 °C and stirred
the resulting mixture for additional 1 h at 0 °C (0.1 mL reaction
aliquot was concentrated using Rotovap, diluted in CD Cl and
2
2
1
filtered to remove inorganics. H-NMR analysis of the filtrate
indicated >98% STABASE adduct (3). The reaction was
quenched with 10 wt % aqueous ammonium chloride (70 mL)
while keeping the internal temperature below 15 °C. The top
organic layer was washed with water (50 mL), and the resulting
organic layer was filtered through a Frit funnel and rinsed with
toluene (20 mL). The filtrate was concentrated under vacuum
using Rotovap to dryness to afford STABASE adduct 3 as off-
1
white to tan solids (26.0 g, 69.5 wt % purity by HNMR assay,
1
quantitative yield), which was used directly in the next step. H
D
Org. Process Res. Dev. XXXX, XXX, XXX−XXX