Journal of Natural Products
Note
streptomycin sulfate, and 100 μg/mL chloramphenicol in filtered
seawater), a white filamentous fungal strain (RKDO 1698) was
isolated. The fungus was taxonomically identified using sequence
homology of rDNA genes, including the ITS1-5.8S-ITS2 region and
the nLSU region. A seed culture of Pithomyces sp. RKDO 1698 was
prepared by inoculating 13 mL of SMY broth (10 g/L peptone, 40 g/
L maltose, 10 g/L yeast extract, and 18 g/L Instant Ocean in
deionized H2O) contained in a 60 mL glass culture tube with
cryopreserved mycelia. The seed culture was fermented for 7 days on
a rotary shaker (200 rpm at 22.0 °C), after which it was homogenized
with glass beads using a vortex mixer. The homogenized seed culture
was used to inoculate 120 glass culture tubes containing 13 mL of
YES broth (20 g/L yeast extract,150 g/L sucrose, and 0.5 g/L
MgSO4·7H2O in deionized H2O) each with approximately 50 μL.
The culture tubes were distributed between two racks that were
adjusted such that the tubes lay at 45° with respect to the horizontal
and were fermented without agitation at 22.0 °C for 14 days.
Extraction and Purification. After 14 days of fermentation, all
culture tubes contained a mat of mycelia on the broth surface. The
mats were removed from their respective tubes, pooled, and then
rinsed with deionized H2O. The remaining broth from each tube was
also pooled. Both the mycelia and broth were extracted separately
with 1.5 L of EtOAc in 3 L Fernbach flasks. The extracts were dried in
vacuo to yield 2.91 g (mycelia) and 0.60 g (broth) of dried material,
which was analyzed by UHPLC-HRMS. As 1 was contained almost
entirely in the mycelia extract, this extract was chosen for further
purification. The mycelia extract was fractionated by automated
reversed-phase flash chromatography (Teledyne ISCO CombiFlash
Rf) using a 120 g C18 column (Redisep Rf High Performance GOLD)
and eluted using the following elution method: 95% H2O (solvent
A)/5% CH3OH (solvent B) from 0 to 5 min, linear gradient from 5%
solvent B to 100% B from 5 to 40 min and 100% solvent B from 40 to
50 min (flow rate = 60 mL/min). The eluent was detected by UV
(227 nm), and 1 eluted between 38.9 and 40.7 min. All fractions
within this window were dried in vacuo and analyzed by UHPLC-
HRMS and those that were deemed pure were pooled to afford 240
mg of 1.
values are provided in Figure S23. Screening protocols are also
provided in the Supporting Information.
In conclusion, we report a new Pithomyces cyclic lip-
odepsipeptide, fusaristatin C, which shares structural features
with several natural products of both fungal and bacterial
origin. With the exception of the C-11 position, we assigned
the absolute configuration using chemical derivatization and J-
based configuration analysis. Fusaristatin C did not exhibit
biological activity against the microbial pathogens or cell lines
tested. This is the first report of a natural product from a coral-
derived Pithomyces sp.
EXPERIMENTAL SECTION
■
General Experimental Procedures. Optical rotation was
measured on a Rudolph Autopol III polarimeter using a 50 mm
microcell (1.2 mL). Infrared (IR) spectra were recorded using
attenuated total reflectance on a Thermo Nicolet 6700 FT-IR
spectrometer. All NMR spectra (unless specified) were acquired on a
Bruker Avance III NMR spectrometer (1H: 600 MHz, 13C: 151 MHz)
equipped with a 5 mm cryoprobe and located at Agriculture and Agri-
Food Canada (AAFC) in Charlottetown, PE, Canada. All chemical
shifts are reported in ppm and referenced to residual solvent signals
[1H (DMSO-d6): 2.50 ppm, 13C (DMSO-d6): 39.51 ppm, 1H
(CD3OD): 3.31 ppm, and 13C (CD3OD): 49.00 ppm]. The
HETLOC and 1D-ROESY NMR experiments were acquired on a
400 MHz NMR with the dipsi2etgpjcsix1 pulse program. Default
acquisition parameters were used except for the following
modifications: td (f2) = 6144; td (f1) = 512; ns = 128; sw (f2 and
f1) = 4.80 ppm; o1p (f2 and f1) = 2.9 ppm; cnst2 = 145.0; cnst16 =
5.0; gpz1 = 13.0%; gpz2 = 19.0%; gpz3 = 30.0%. The HETLOC
spectrum was zero-filled to 8192 and 2048 in the f2 and f1
dimensions, respectively. Tandem mass spectra were acquired by
direct infusion on a Thermo Velos Orbitrap mass spectrometer using
a collision-induced dissociation energy of 30 eV at a rate of 2 μL/min.
UHPLC-HRMS analyses (unless specified) were carried out using a
Thermo Accela chromatograph equipped with HRMS-ELSD-UV
detection: a Thermo LTQ Exactive fitted with an ESI source, Sedex
80 LT-ELSD, and Thermo PDA, respectively. The following
chromatographic conditions were used: Kinetex core−shell 100 Å
UHPLC column (2.1 × 50 mm, 1.7 μm, Phenomenex), mobile-phase
flow rate of 0.5 mL/min, injection volume of 10 μL (all samples were
prepared in CH3OH), and a linear gradient from H2O/CH3CN (95:5,
0.1% formic acid) at 0.2 min to 100% CH3CN (0.1% formic acid) at
4.8 min, which was held until 8.0 min before returning to H2O/
CH3CN (95:5, 0.1% formic acid) for a 1.5 min equilibration. The
following HRMS parameters were used: positive ionization mode,
mass resolution of 30 000, mass range of m/z 190 to 2000, spray
voltage of 2.0 kV, capillary temperature of 300 °C, S-lens RF voltage
of 60.0%, maximum injection time of 10 ms, and 1 microscan. The
system was controlled by Thermo Xcalibur software modules. All
reagents were purchased from commercial sources and used without
further purification. All solvents used for purification were of HPLC
grade or higher.
Fusaristatin C (1): amorphous, white solid; [α]24.4D = +1.4 (c 0.28,
CH3OH); UV (CH3CN/H2O) λmax 230 nm; IR νmax = 1623, 1658,
1730, 2850, 2920, 2954, 3278, 3322, 3346, and 3457 cm−1; see Table
1
1 for H and 13C NMR data; ESI+ HRMS m/z 482.3219 [M + H]+
+
(calcd for C25H44N3O6 , 482.3225).
Amino Acid Configuration Using Marfey’s Method. To a vial
containing dried 1 (5 mg, 0.01 mmol) was added 6 M HCl (1 mL),
and then the mixture heated to 80 °C for 1 h with stirring. The
reaction mixture was dried in vacuo, and a portion of the resulting
hydrolysate (1 mg) was transferred to a separate vial, to which 150 μL
of deionized H2O, 300 μL of L-FDAA (10 mg/mL in acetone), and 70
μL of aqueous NaHCO3 (1 M) were added. The reaction mixture was
heated to 37.0 °C for 2 h, quenched with 70 μL of HCl (1 M), and
then dried in vacuo. The same process was carried out with L-serine (1
mg, 0.01 mmol) and DL-serine (1 mg, 0.01 mmol) to afford L-FDAA-
derivatized serine standards. L-FDAA-derivatized hydrolysate and
standards were suspended in CH3OH (500 μg/mL) for UHPLC-
HRMS analysis. The following chromatographic conditions were
used: Thermo Hypersil Gold 100 Å UHPLC column (1.9 μm C18, 50
mm × 2.1 mm), 95% H2O with 0.1% (v/v) formic acid (solvent A):
5% CH3CN with 0.1% (v/v) formic acid (solvent B) from 0 to 55 min
followed by a linear gradient from 5% B to 40% B from 55 to 57 min
and then 40% solvent B from 57 to 60 min, flow rate of 400 μL min−1
and injection volume of 10 μL.
Configuration Analysis of 3-Hydroxy-2,11-dimethyltetrade-
canoic Acid. Compound 1 (50 mg, 0.1 mmol) was dissolved in 5 mL
of DCl (3 M in a 3:1 mixture of D2O/CD3OD) and stirred at 80.0 °C
for 1 h. The reaction mixture was extracted three times with 5 mL of
hexanes, and the pooled extracts were dried in vacuo to afford 39 mg
of material. The entire extract was fractionated by automated flash
chromatography using a 12 g silica column (InnoFlash, Canadian Life
Sciences) and eluted with 100% EtOAc for 10 min (flow rate = 30
mL/min). All fractions were dried in vacuo, and those containing 6
Isolation and Fermentation of Pithomyces sp. RKDO 1698.
E. fusca samples were collected by hand using scuba at a depth of 12.0
m from a reef in Crab Cove, south Florida, USA (26°18.736′ N,
80°03.583′ W) on June 2, 2009. Healthy branches were aseptically
removed from a coral colony, brought to the ocean surface, and stored
at 18−22 °C (ocean temperature). Approximately 4 h postcollection,
the branches were aseptically cut into 0.5−1.0 cm sections, transferred
to separate sterile 50 mL conical tubes, and then washed three times
with filter-sterilized seawater (0.22 μm cellulose acetate filters from
Corning) to remove loosely associated surface bacteria. Branch
samples were homogenized in filter-sterilized seawater and then
separated according to particle size (≥500, ≥213, ≥104, ≥51, and
<51 μm) using an adapted particle-filtration apparatus.18 From a
particle filtrate plated onto YM media (10 g/L agar, 5 g/L malt
extract, 1 g/L yeast extract, 50 μg/mL tetracycline, 50 μg/mL
D
J. Nat. Prod. XXXX, XXX, XXX−XXX