Biomacromolecules
Page 2 of 18
“scrubbing” column to remove any amines. Water was
purified with an Arium Pro system from Sartorius (Göt-
tingen, Germany).
+ H]+ calcd, 354.17; found, 354.17. 1H NMR (400 MHz,
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MeOD, δ): 7.78 (d, J = 7.5 Hz, 2H), 7.63 (d, J = 7.5 Hz,
2H), 7.37 (t, J = 7.4 Hz, 2H), 7.33–7.26 (m, 2H), 4.33 (d,
J = 6.8 Hz, 2H), 4.18 (t, J = 6.9 Hz, 1H), 3.08 (t, J = 7.0
Hz, 2H), 2.27 (t, J = 7.4 Hz, 2H), 1.60 (p, J = 7.5 Hz, 2H),
1.49 (p, J = 7.1 Hz, 2H), 1.33 (p, J = 10.1, 6.0 Hz, 2H).
13C NMR (101 MHz, MeOD, δ): 157.49, 143.95, 141.20,
127.34, 126.71, 124.75, 119.50, 66.11, 47.13, 40.17,
33.71, 29.18, 25.97, 24.45.
Boc-Flp-OBn. Boc-Flp-OH (2.5 g, 10.7 mmol) was
dissolved in DMF. Solid Cs2CO3 (1.5 g, 10.7 mmol) was
added, and the reaction mixture was stirred for 10 min.
Benzyl bromide (1.27 mL, 10.7 mmol) was added drop-
wise, and the mixture was stirred for 16 h. The mixture
was then concentrated under reduced pressure. Crude
product was purified by chromatography on silica gel,
eluting with EtOAc (10% v/v) in hexanes to yield product
(2.26 g, 65%). HRMS–ESI (m/z): [M + H]+ calcd, 324.15;
found, 324.16. 1H NMR (400 MHz, CDCl3, δ): 7.35 (d, J
= 4.5 Hz, 5H), 5.32–5.19 (m, 1H), 5.19–5.14 (m, 1H),
5.14–5.04 (m, 1H), 4.58–4.38 (m, 1H), 3.99–3.75 (m,
1H), 3.61 (ddt, J = 36.1, 13.0, 3.9 Hz, 1H), 2.70–2.47 (m,
1H), 2.20–1.97 (m, 1H), 1.53–1.31 (m, 9H), which are
consistent with literature values for this known com-
pound.7
Boc-flp-Flp-OBn. Boc-Flp-OBn (2.26 g, 6.99 mmol)
was dissolved in 4 N HCl (8.0 mL), and the reaction mix-
ture was stirred for 30 min. The reaction mixture was then
concentrated under reduced pressure. The residue was
dissolved in DMF. DIEA (4.87 mL, 27.96 mmol) was
added dropwise. Solid PyBrOP (3.91 g, 8.39 mmol) and
Boc-flp-OH (1.79 g, 7.69 mmol) were added, and the re-
action mixture was stirred for 16 h. The residue was con-
centrated under reduced pressure, taken up in EtOAc, and
washed successively with 1.0 M HCl (2×), saturated
aqueous NaHCO3 (2×), and brine (2×). The organic layer
was dried over Na2SO4(s), filtered, and concentrated un-
der reduced pressure to yield crude product (3.96 g),
which was carried forward without further purification.
HRMS–ESI (m/z): [M + H]+ calcd, 439.20; found,
439.20. 1H NMR (400 MHz, CDCl3, δ): 7.35 (d, J = 4.0
Hz, 6H), 5.32–5.10 (m, 4H), 4.55 (dt, J = 20.6, 8.4 Hz,
1H), 4.06–3.77 (m, 4H), 3.66 (ddt, J = 36.6, 13.0, 3.5 Hz,
1H), 2.62 (dddt, J = 28.3, 16.6, 8.0, 1.8 Hz, 1H), 2.22–
1.99 (m, 2H), 1.85 (ddt, J = 71.3, 13.3, 6.7 Hz, 1H), 0.94
(d, J = 6.7 Hz, 3H), 0.85 (dd, J = 6.7, 2.3 Hz, 4H). 13C
NMR (101 MHz, CDCl3, δ): 172.16, 172.04, 155.00,
154.56, 135.47, 135.28, 128.65, 128.58, 128.52, 128.42,
128.33, 128.16, 92.65, 91.86, 90.86, 90.08, 77.25, 71.88,
71.83, 67.09, 67.02, 60.40, 57.72, 57.48, 53.58, 53.35,
53.15, 52.93, 37.77, 37.54, 36.71, 36.48, 28.36, 28.17,
27.98, 27.86, 19.03, 18.96, 18.92, 14.22.
The phrase “concentrated under reduced pressure”
refers to the removal of solvents and other volatile mate-
rials with a rotary evaporator at water-aspirator pressure
(<20 torr) while maintaining a water bath below 40 °C.
Residual solvent was removed from samples with a high
vacuum (<0.1 torr).
All procedures were performed in air at ambient tem-
perature (~22 °C) and pressure (1.0 atm) unless indicated
otherwise.
Instrumentation. Solid-phase peptide synthesis
was performed with a Liberty Blue Peptide Synthesizer
from CEM (Matthews, NC). Synthetic peptides were pu-
rified by HPLC with a Prominence instrument from Shi-
madzu (Kyoto, Japan) equipped with a VarioPrep 250/21
C18 column from Macherey–Nagel (Düren, Germany).
Molecular mass was determined by matrix-assisted laser
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desorption/ionization–time-of-flight
(MALDI–TOF)
mass spectrometry on an α-cyano-4-hydroxycinnamic
acid or sinapic acid matrix with a microflex LRF™ in-
strument from Bruker (Billerica, MA). Purity analyses
were performed with an Acquity UPLC® H-Class system
from Waters that was equipped with an Acquity photodi-
ode array detector, Acquity quaternary solvent manager,
Acquity sample manager with a flow-through needle, Ac-
quity UPLC® BEH C18 column (2.1 × 50 mm, 1.7-µm
particle size) and Empower 3 software. 1H and 13C NMR
spectra were acquired with an Avance III 400 spectrome-
ter from Bruker. Sedimentation equilibrium experiments
were performed with an XL-A analytical ultracentrifuge
and An-60 Ti rotor from Beckman Coulter (Brea, CA) at
the Biophysics Instrumentation Facility of the University
of Wisconsin–Madison (UW BIF). Beads were imaged
using a Eclipse Ti inverted confocal microscope from
Nikon (Melville, NY) at the Biochemistry Optical Core
of the University of Wisconsin−Madison. Flow cytome-
try was performed with an Accuri Flow Cytometer with
C-Sampler from BD (San Jose, CA) at the UW BIF. CD
data were acquired with a 420 CD spectrophotometer
from Aviv Biomedical (Lakewood, NJ) at the UW BIF.
Small-Molecule Synthesis. Fmoc-6-aminohexa-
noic acid. 6-Aminohexanoic acid (1.00 g, 7.62 mmol)
was dissolved in a saturated aqueous solution of NaHCO3
(50 mL). In a separate flask, Fmoc-OSu (2.82 g,
8.38 mmol) was dissolved in dioxane (50 mL). The two
solutions were combined, and the reaction mixture be-
came cloudy and was stirred for 16 h. The mixture was
then concentrated under reduced pressure. The residue
was dissolved in EtOAc and washed with aqueous 1.0 M
HCl and brine. The organic layer was dried over
Na2SO4(s), decanted, and concentrated under reduced
pressure. Crude product was purified by chromatography
on silica-gel, eluting with EtOAc (40% v/v) and acetic
acid (1% v/v) in hexanes to yield Fmoc-6-aminohexanoic
acid (2.56 g, 95%) as a white solid. HRMS–ESI (m/z): [M
Fmoc-Gly-flp-Flp-OBn. Crude Boc-flp-Flp-OBn
(3.96 g) was dissolved in 4 N HCl (8.0 mL), and the re-
action mixture was stirred for 30 min. The mixture was
then concentrated under reduced pressure. The residue
was dissolved in DCM. DIEA (3.65 mL, 20.97 mmol)
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