purified using ion-exchange chromatography on Sephadex resin
followed by preparative RP-HPLC and isolated as ammonium
salts (29% yield). D1 (compound 6a): 6.75 mg, 0.0104 mmol;
room temperature for 24 hours. The final product was precipitated
after addition of a solution of anhydrous NaClO (145.1 mg, 2.02
mmol) in dry acetone (25 mL). The obtained suspension was
4
R
t
(method A2) = 8.5 min; HRMS ESI (-) calculated m/z for
cooled to 4C, and the precipitate was filtered off and washed
-
-
1
C
(
21
H
26
N
7
O
9
P
2
S [M-H] 614.09934, found 614.09999; H NMR
500 MHz, Deuterium Oxide, 25C) δ 8.92 (s, 1H), 7.42 (d, J = 7.7
Hz, 1H), 7.25 (d, J = 7.8 Hz, 1H), 7.10 (s, 1H), 7.03 (t, J = 7.8 Hz,
H), 6.93 (t, J = 7.7 Hz, 1H), 5.76 (d, J = 2.3 Hz, 1H), 4.45 – 4.37
m, 1H), 4.38 – 4.32 (m, 1H), 4.33 – 4.28 (m, 1H), 4.28 – 4.23 (m,
H), 3.76 (s, 3H), 3.19 – 3.10 (m, 2H), 2.86 – 2.80 (m, 2H); 31
4
triply with cold, dry acetone and dried overnight over P O10 in a
vacuum. The final product was obtained as a white solid (84.4 mg,
0.16 mmol, 64% yield). R (method A2) = 9.8 min; HRMS ESI (-)
t
-
-
1
(
2
calculated m/z for C20
502.12489.
21 7 7
H N O P [M-H] 502.12456, found
P
4
.7.8. Compound 11
To guanosine (6.0g, 21.2 mmol) solution in DMSO (53 mL),
NMR (202 MHz, Deuterium Oxide, 25C) δ 42.24 (d, J = 29.0
Hz), -1.86 (dt, J = 29.0, 10.0 Hz). D2 (compound 6b): 8.35 mg,
benzyl bromide (20.1 mL, 169.2 mmol) was added. The reaction
mixture was stirred at room temperature for 3 hours. Then 25%
ammonia solution in water was being added dropwise until pH
value of the reaction mixture reached value 7. In the next step
acetone (250 mL) was added and continuously additional portions
of 25% ammonia solution in water was being added dropwise until
pH value of the mixture was stabilized at value 7. Meanwhile the
product was being precipitated from the solution. The obtained
suspension was cooled to 4C, and the precipitate was filtered off
and washed triply with cold acetone and dried overnight over
0
.0129 mmol; R
t
(method A2) = 8.7 min; HRMS ESI (-) calculated
-
-
1
m/z for C21H N O P S [M-H] 614.09934, found 614.09934; H
NMR (500 MHz, Deuterium Oxide, 25C) δ 8.88 (s, 1H), 7.38 (d,
J = 7.9 Hz, 1H), 7.21 (d, J = 8.1 Hz, 1H), 7.10 (s, 1H), 6.99 (t, J =
8
1
3
26 7 9 2
.1, 7.4 Hz, 1H), 6.91 (t, J = 7.9, 7.4 Hz, 1H), 5.76 (d, J = 2.0 Hz,
H), 4.48 – 4.43 (m, 1H), 4.37 – 4.29 (m, 2H), 4.28 – 4.24 (m, 2H),
.72 (s, 3H), 3.25 – 3.10 (m, 2H), 2.89 – 2.76 (m, 2H); 31P NMR
(
(
202 MHz, Deuterium Oxide, 25C) δ 41.70 (d, J = 27.0 Hz), -2.06
dt, J = 27.0, 9.3 Hz).
4
.7.5. Compound 8
4
P O10 in a vacuum. If a color of the obtained solid after drying was
Dry compound 11 (90.3 mg, 0.242 mmol) was suspended in
yellow, then it was washed and dried again. Presence of bromine
or bromides in the final product may lead to reduction of yield in
tiophosphorylation reaction. The final product was obtained as a
trimethyl phosphate (1.2 mL) and placed on ice-bath. After cooling
to 0C, 2,6-dimethylpyridine (140.0 μL, 1.209 mmol) and freshly
distilled thiophosphoryl chloride (97.8 μL, 0.964 mmol) was
added. The reaction was stirred at 0C until the integration of
signal from 7-methylguanosine on the HPLC profile dropped
below 10%. The reaction was quenched by addition of water (6.0
mL) and methanol (6.0 mL) to the reaction mixture followed by
adjustment of pH value to 6 by addition of 0.1 M NaOH solution.
The product was purified using preparative RP-HPLC and isolated
as an ammonium salt (41.7 mg, 0.083 mmol, 34% yield).
white solid (5.6 g, 15.0 mmol, 71% yield). R
t
(method A2) = 9.0
+
+
min; HRMS ESI (+) calculated m/z for C17
H
20
N
5
O
5
[M+H]
1
374.14590, found 374.14582; H NMR (400 MHz, DMSO-d
6
) δ
9.43 (s, 1H), 7.49 – 7.45 (m, 2H), 7.42 – 7.33 (m, 3H), 6.98 (s,
2H), 5.83 (d, J = 4.1 Hz, 1H), 5.67 (s, 1H), 5.70 – 5.59 (m, 2H),
5.30 (s, 1H), 5.28 (s, 1H), 4.45 (t, J = 4.6, 4.1 Hz, 1H), 4.13 (t, J =
5.0, 4.6 Hz, 1H), 3.99 (q, J = 5.0, 3.3 Hz, 1H), 3.71 (dd, J = 12.2,
3.3 Hz, 1H), 3.59 (dd, J = 12.2, 3.3 Hz, 1H).
t
R (method A1) = 9.0 min; HRMS ESI (-) calculated m/z for
4
.7.9. 4Ei-1
-
-
1
C
(
5
=
17
H
18
N
5
O
7
PS [M-H] 468.07483, found 468.07463; H NMR
400 MHz, Deuterium Oxide, 25C) δ 9.77 (s, 1H), 7.43 – 7.27 (m,
H), 6.07 (d, J = 3.8 Hz, 1H), 5.68 (q, J = 14.8 Hz, 2H), 4.70 (t, J
4.8, 3.8 Hz, 1H), 4.53 (t, J = 4.8 Hz, 1H), 4.46 – 4.41 (m, 1H),
.28 (ddd, J = 11.9, 5.4, 2.4 Hz, 1H), 4.11 (ddd, J = 11.9, 5.4, 2.2
To sodium salt of compound 10 (46.3 mg, 1130 mODU, 0.099
mmol) solution in HEPES buffer (995 μL, 1 M, pH 8.0),
tryptamine (47.5 mg, 0.296 mmol) was added. Then the reaction
mixture was stirred at room temperature for 72 hours. After
diluting the reaction with water (25.0 mL) and methanol (1.0 mL),
the product was purified using preparative RP-HPLC and isolated
as an ammonium salt (17.2 mg, 0.028 mmol, 28% yield).
4
3
1
1
Hz, 1H); P NMR (162 MHz, Deuterium Oxide, 25C,
decoupling) δ 45.95 (s).
H
4
.7.6. Compounds 9a, 9b
Triethylammonium salt of compounds 6a, 6b (a mixture of
t
R (method A2) = 14.4 min; HRMS ESI (-) calculated m/z for
C
-
-
1
27
H
29
N
7
O
7
P [M-H] 594.18661, found 594.18760; H NMR (400
diastereomers, 113.4 mg, 1626 mODU, 0.143 mmol) was
dissolved in DMF (1.4 mL). Then imidazole (97.2 mg, 1.427
mmol), 2,2’-dithiodipyridine (94.28 mg, 0.428 mmol),
triphenylphosphine (112.98 mg, 0.431 mmol) and triethylamine
MHz, CD OD, 25C) δ 7.33 – 7.24 (m, 7H), 7.06 (s, 1H), 7.01
3
(ddd, J = 8.1, 7.0, 1.0 Hz, 1H), 6.82 (ddd, J = 8.1, 7.0, 1.0 Hz, 1H),
5.94 (d, J = 4.7 Hz, 1H), 5.25 (q, J = 14.6 Hz, 2H), 4.60 (t, J = 4.7
Hz, 1H), 4.40 (t, J = 4.7 Hz, 1H), 4.32 (ddd, J = 4.7, 4.2, 3.7 Hz,
1H), 4.12 (ddd, J = 11.8, 4.2, 2.3 Hz, 1H), 3.98 (ddd, J = 11.8, 3.7,
(
80.0 μL, 0.574 mmol) were added. The reaction mixture was
stirred at room temperature for 5 hours. The final product was
precipitated after addition of a solution of anhydrous NaClO (81.9
3
1
2.3 Hz, 1H), 3.19 – 3.07 (m, 2H), 2.85 – 2.78 (m, 2H); P NMR
1
4
(162 MHz, CD
3
OD, 25C, H decoupling) δ 10.11 (s).
mg, 0.669 mmol) in dry acetone (15.0 mL). The obtained
suspension was cooled to 4C, and the precipitate was filtered off
and washed triply with cold, dry acetone and dried overnight over
4
.8. Determination of dissociation constants with murine eIF4E
protein (time-synchronized fluorescence quenching titration,
tsFQT)
P
4
O
10 in a vacuum. The final product was obtained as a mixture of
sodium salts of diastereomers (68.3 mg, 0.120 mmol, 84% yield).
(method A2) = 5.6 min (D1), 5.8 min (D2); HRMS ESI (-)
Determination of dissociation constants of obtained compounds
without tryptamine modification was carried out according to
R
t
-
-
calculated m/z for C14
H
18
N
7
O
9
P
2
S [M-H] 522.03674, found
previously described time-synchronized fluorescence quenching
5
22.03683 (D1), 522.03683 (D2).
.7.7. Compound 10
Triethylammonium salt of compound 7, 139.8 mg, 0.25 mmol)
titration method.28 The measurements were carried out on a Cary
Eclipse BioMelt (Agilent Technologies) fluorescence
spectrophotometer using thermostated at 20 C couvette
containing stirring bar in 50 mM HEPES/ KOH (pH 7.2), 100 mM
KCl, 0.5 mM EDTA, 1 mM DTT. Aliquots of 1 L increasing
concentration of compound solutions (2 x 2 M, 2 x 5 M, 8 x 10
4
was dissolved in DMF (2.5 mL). Then imidazole (171.0 mg, 2.53
mmol), 2,2’-dithiodipyridine (167.0 mg, 0.76 mmol),
triphenylphosphine (198.8 mg, 0.76 mmol) and triethylamine (142
μL, 1.01 mmol) were added. The reaction mixture was stirred at
8
M, 8 x 20 M, 4 x 50 M, 4 x 100 M, 4 x 200 M, 4 x 500 M,
x 1000 M) were added to 1.4 mL of 30 M protein solutions.