RESEARCH
drug gefitinib to morpholine via the isolated
complex 1 (Fig. 1C), which was prepared by re-
acting gefitinib with the easily accessible Pd(0)
precursor [(tBuXPhos)Pd]2(COD) (26) at room
temperature. An extensive survey of ligands,
solvents, and bases revealed tBuXPhos with the
phosphazene base P2-Et (9–11) as the optimal
ligand-base combination for this coupling (27).
The desired product 2 was formed in 83% yield
in just 2 hours at room temperature by using
tBuXPhos with P2-Et in tetrahydrofuran (THF)
as solvent, whereas the analogous catalytic re-
action using 5 mole % (mol %) tBuXPhos Pd G3
failed completely. Using 1, reaction performance
was generally insensitive to the choice of solvent
[dimethyl sulfoxide (DMSO), dimethylformamide,
2-methyl-THF, toluene], and the coupling proceeded
effectively at concentrations as low as 0.01 M,
potentially facilitating automated (9, 28, 29) or
microfluidic synthesis (30, 31).
The stability of 1 was tested by storing it in a
vial on the benchtop under an atmosphere of air.
After 6 months, there was no observable loss
of purity or reactivity. Complex 1 also exhibited
good solution stability, providing comparable
yields whether a solution of the complex was
freshly prepared or aged for 18 hours prior to re-
action setup. In contrast to most catalytic C–N
cross-coupling reactions, reactions of 1 could also
be performed under an atmosphere of air with
only slightly lower efficiency (27). Similarly, the
OAC of the anticoagulant drug rivaroxaban (3)
could be isolated and coupled with morpholine
in 82% yield (Fig. 1D) to provide 4, whereas the
corresponding catalytic reaction gave a meager
2% yield. Analysis of 3 by single-crystal x-ray
diffraction confirmed the structure of this organo-
palladium complex derived from rivaroxaban,
a marketed drug (Fig. 1D).
Following these encouraging initial results, we
tested the generality of the OAC protocol on a
diverse set of drugs and drug-like aryl halides
(Fig. 2) whose complexity is represented by a
computed score (CQSAR) according to a recently
reported model (12). Several of these substrates
had been tested previously as part of a chem-
istry informer library (10) and provided con-
sistently low performance in C–N cross-coupling
reactions using state-of-the-art catalytic condi-
tions based on Pd, Cu, or Ni metallophotoredox
(32). The OACs derived from these halides, either
used as isolated solids or generated in situ, readily
coupled at room temperature with multiple
classes of amine nucleophiles to provide products
5 to 15 (Fig. 2). In all cases, the corresponding
catalytic reactions were less efficient and some-
times failed completely (compare 9 and 10, Fig. 2).
Although the use of isolated OACs improved the
likelihood that the first reaction attempt would
succeed, some substrates were still problematic,
such as 15 (Fig. 2) (27). In addition, whereas the
OAC method demonstrated a distinct advantage
over the catalytic method for most substrates of
moderate to high complexity (CQSAR = 2.5 to 3.5),
for a simple substrate such as 16 (CQSAR = 1.1)
there was no significant difference between the
two protocols. On occasion, we observed a minor
ORGANIC CHEMISTRY
Pharmaceutical diversification
via palladium oxidative
addition complexes
Mycah R. Uehling1,2, Ryan P. King2, Shane W. Krska1,
Tim Cernak1,3*, Stephen L. Buchwald2*
Palladium-catalyzed cross-coupling reactions have transformed the exploration of chemical
space in the search for materials, medicines, chemical probes, and other functional molecules.
However, cross-coupling of densely functionalized substrates remains a major challenge. We
devised an alternative approach using stoichiometric quantities of palladium oxidative addition
complexes (OACs) derived from drugs or drug-like aryl halides as substrates. In most cases,
cross-coupling reactions using OACs proceed under milder conditions and with higher success
than the analogous catalytic reactions. OACs exhibit remarkable stability, maintaining their
reactivity after months of benchtop storage under ambient conditions. We demonstrated the
utility of OACs in a variety of experiments including automated nanomole-scale couplings
between an OAC derived from rivaroxaban and hundreds of diverse nucleophiles, as well as the
late-stage derivatization of the natural product k252a.
alladium-catalyzed carbon-carbon (1) and
carbon-heteroatom (2, 3) bond-forming re-
actions have had a major impact on the
practice of organic synthesis and have be-
come mainstays of modern drug discovery
alyst regeneration steps. Because a successful
reaction outcome requires the efficient opera-
tion of each of these steps, interference from
a highly functionalized molecule with any one
step could, in principle, disrupt the entire desired
catalytic reaction. We reasoned that a Pd-mediated
cross-coupling reaction, where an equivalent of an
isolated oxidative addition complex (OAC; Fig. 1B)
(13) is used as the substrate, might improve the
likelihood that the reaction would succeed.
By design, such reactions initiate as close to
the product-forming step as possible (Fig. 1A,
highlighted region). Performing reactions with
the use of an OAC as the substrate obviates the
requirement for multiple rounds of catalyst turn-
over to form substantial amounts of product.
Although an OAC-mediated cross-coupling reac-
tion requires the use of one equivalent of pal-
ladium and ligand, the cost of these reagents
on a typical drug discovery scale (~$1 for a 25 mg–
scale reaction) is much less than that of a densely
functionalized drug-like substrate.
Palladium-mediated reactions are often used
instead of catalytic methods in settings where
first-pass reaction performance is considerably
more important than reagent cost, such as bio-
conjugation (14–16), peptide modification (17),
total synthesis (18–20), radiolabeling (21, 22),
PET imaging (23), and mechanistic inquiry
(24, 25). In previous studies from our group,
relatively simple organopalladium complexes
were used with high-complexity nucleophiles
such as peptides, proteins, and antibodies. With
this precedent, we wondered whether similar
organometallic complexes could be formed from
complex, drug-like aryl halides, and whether such
OACs would be stable, isolable, and practical for
use in a drug discovery context.
P
(4, 5). To date, most catalytic coupling methods
have been developed using relatively simple
model substrates (6). In contrast, the struc-
turally complex substrates typically encountered
in applied settings often contain functional groups
or substructures that can inhibit catalyst turnover
or participate in unproductive side reactions. For
example, many pharmaceutically relevant hetero-
cycles are competent ligands for transition metal
catalysts (7) and thus often function as competitive
catalyst inhibitors or displace activating ligands,
leading to inactive complexes (8). In practice, these
mechanistic vulnerabilities manifest as failed re-
actions; indeed, surveys of electronic notebooks
(9) and systematic evaluation of reactivity pat-
terns of collections of drug-like substrates (10, 11)
indicate that Pd-catalyzed cross-coupling reac-
tions of complex substrates fail frequently, with
failure rates above 50% for some chemistries.
With the trend toward increasing structural com-
plexity in synthetic drugs (12), new cross-coupling
approaches that exhibit greater reaction scope
and reliability will greatly facilitate the invention
of new medicines.
The generally accepted mechanism of Pd-
catalyzed cross-coupling reactions (Fig. 1A) in-
volves catalyst activation, oxidative addition,
nucleophile association or transmetallation,
deprotonation, reductive elimination, and cat-
1Merck & Co. Inc., Kenilworth, NJ 07033, USA. 2Department of
Chemistry, Massachusetts Institute of Technology, Cambridge,
MA 02139, USA. 3Department of Medicinal Chemistry, College of
Pharmacy, University of Michigan, Ann Arbor, MI 48109, USA.
*Corresponding author. Email: tcernak@umich.edu (T.C.);
sbuchwal@mit.edu (S.L.B.)
Indeed, organopalladium complexes derived
from drugs can be readily formed and isolated.
Initial efforts focused on coupling the anticancer
Uehling et al., Science 363, 405–408 (2019)
25 January 2019
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