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Pantoprazole

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Name

Pantoprazole

EINECS 600-331-6
CAS No. 102625-70-7 Density 1.51 g/cm3
PSA 105.54000 LogP 3.75000
Solubility N/A Melting Point 139-140oC, decomposes
Formula C16H15F2N3O4S Boiling Point 586.9 °C at 760 mmHg
Molecular Weight 383.376 Flash Point 308.7 °C
Transport Information N/A Appearance almost white solid
Safety 22-26-36/37/39-45 Risk Codes 20/21/22-37/38-41-48
Molecular Structure Molecular Structure of 102625-70-7 (Pantoprazole) Hazard Symbols HarmfulXn
Synonyms

1H-Benzimidazole,5-(difluoromethoxy)-2-[[(3,4-dimethoxy-2-pyridinyl)methyl]sulfinyl]- (9CI);2-[[(3,4-Dimethoxypyridin-2-yl)methyl]sulfinyl]-5-difluoromethoxy-1H-benzimidazole;5-(Difluoromethoxy)-2-[[(3,4-dimethoxy-2-pyridinyl)methyl]sulfinyl]-1H-benzimidazole;5-(Difluoromethoxy)-2-[[(3,4-dimethoxy-2-pyridyl)methyl]sulfinyl]-1H-benzimidazole;BY 1023;Pantozol;SKF 96022;

Article Data 39

Pantoprazole Synthetic route

102625-64-9

pantoprazole sulfide

102625-70-7

5-(difluoromethoxy)-2-[[(3,4-dimethoxy-2-pyridyl)methyl]sulfinyl]-1H-benzimidazole

Conditions
ConditionsYield
With sodium hydroxide; N-chlorophthalimide In DMF (N,N-dimethyl-formamide); water; acetonitrile at -10 - 20℃; for 1.75h;98%
With peracetic acid; LACTIC ACID In methanol; dichloromethane at -25 - -20℃; for 1h; Reagent/catalyst;95%
Stage #1: pantoprazole sulfide With triethylamine In acetonitrile at 0℃; for 0.166667h; pH=8-9;
Stage #2: With dihydrogen peroxide In acetonitrile for 10h; Solvent; Temperature; Reagent/catalyst;
94.3%
409098-86-8

5-(difluoromethoxy)-2-[[(4-chloro-3-methoxy-2-pyridinyl)methyl]sulfinyl]-1H-benzimidazole

124-41-4

sodium methylate

102625-70-7

5-(difluoromethoxy)-2-[[(3,4-dimethoxy-2-pyridyl)methyl]sulfinyl]-1H-benzimidazole

Conditions
ConditionsYield
In methanol for 50h; Product distribution / selectivity; Heating / reflux;78%
In tetrahydrofuran; methanol for 3 - 4h; Product distribution / selectivity; Heating / reflux;75%
In methanol; acetonitrile for 3 - 4h; Product distribution / selectivity; Heating / reflux;75%
Product distribution / selectivity;51%
102625-64-9

pantoprazole sulfide

A

102625-70-7

5-(difluoromethoxy)-2-[[(3,4-dimethoxy-2-pyridyl)methyl]sulfinyl]-1H-benzimidazole

B

Pantoprazole sulfone

Conditions
ConditionsYield
With sodium hydroxide; sodium hypochlorite In water; ethyl acetate at -10 - 20℃; for 1.83333 - 3.25h;A 71%
B n/a
953787-51-4

5-(difluoromethoxy)-2-[[(3,4-dimethoxypyridin-2-yl-1-oxide)methyl]sulfanyl]-1H-benzoimidazole

102625-70-7

5-(difluoromethoxy)-2-[[(3,4-dimethoxy-2-pyridyl)methyl]sulfinyl]-1H-benzimidazole

Conditions
ConditionsYield
With trisodium Edetate; ruthenium trichloride In tetrahydrofuran; 1,4-dioxane; water at 80℃; for 1h;
With edetate trisodium; ruthenium trichloride In tetrahydrofuran; 1,4-dioxane; water at 80℃; for 1h; Heating / reflux;
15931-25-6

3-methoxy-2-methyl-4-nitropyridine 1-oxide

102625-70-7

5-(difluoromethoxy)-2-[[(3,4-dimethoxy-2-pyridyl)methyl]sulfinyl]-1H-benzimidazole

Conditions
ConditionsYield
Multi-step reaction with 6 steps
1: 88 percent / NaOMe / 16 h / 40 °C
2: 2 h / 90 °C
3: 2 N aq. NaOH / 2 h / 80 °C
4: 93 percent / SOCl2 / CH2Cl2 / 2 h / 0 - 5 °C
5: 2 N aq. NaOH / ethanol / 2 h / 50 °C
6: 85 percent / m-chloroperbenzoic acid / CH2Cl2 / 0.5 h / -30 °C
View Scheme
76015-11-7

2-methyl-3-methoxy-4(1H)-pyridinone

102625-70-7

5-(difluoromethoxy)-2-[[(3,4-dimethoxy-2-pyridyl)methyl]sulfinyl]-1H-benzimidazole

Conditions
ConditionsYield
Multi-step reaction with 8 steps
1: 96 percent / POCl3 / 18 h / 90 °C
2: 90 percent / 30percent aq. H2O2, AcOH / 24 h / 90 °C
3: 91 percent / NaOMe / 18 h
4: 2 h / 90 °C
5: 2 N aq. NaOH / 2 h / 80 °C
6: 93 percent / SOCl2 / CH2Cl2 / 2 h / 0 - 5 °C
7: 2 N aq. NaOH / ethanol / 2 h / 50 °C
8: 85 percent / m-chloroperbenzoic acid / CH2Cl2 / 0.5 h / -30 °C
View Scheme
35392-65-5

3-methoxy-2-methylpyridine 1-oxide

102625-70-7

5-(difluoromethoxy)-2-[[(3,4-dimethoxy-2-pyridyl)methyl]sulfinyl]-1H-benzimidazole

Conditions
ConditionsYield
Multi-step reaction with 7 steps
1: 58 percent / 98percent HNO3 / acetic acid / 33 h / 80 °C
2: 88 percent / NaOMe / 16 h / 40 °C
3: 2 h / 90 °C
4: 2 N aq. NaOH / 2 h / 80 °C
5: 93 percent / SOCl2 / CH2Cl2 / 2 h / 0 - 5 °C
6: 2 N aq. NaOH / ethanol / 2 h / 50 °C
7: 85 percent / m-chloroperbenzoic acid / CH2Cl2 / 0.5 h / -30 °C
View Scheme
107512-34-5

4-Chloro-3-methoxy-2-methyl-pyridine

102625-70-7

5-(difluoromethoxy)-2-[[(3,4-dimethoxy-2-pyridyl)methyl]sulfinyl]-1H-benzimidazole

Conditions
ConditionsYield
Multi-step reaction with 7 steps
1: 90 percent / 30percent aq. H2O2, AcOH / 24 h / 90 °C
2: 91 percent / NaOMe / 18 h
3: 2 h / 90 °C
4: 2 N aq. NaOH / 2 h / 80 °C
5: 93 percent / SOCl2 / CH2Cl2 / 2 h / 0 - 5 °C
6: 2 N aq. NaOH / ethanol / 2 h / 50 °C
7: 85 percent / m-chloroperbenzoic acid / CH2Cl2 / 0.5 h / -30 °C
View Scheme
122307-41-9

4-chloro-3-methoxy-2-methylpyridine N-oxide

102625-70-7

5-(difluoromethoxy)-2-[[(3,4-dimethoxy-2-pyridyl)methyl]sulfinyl]-1H-benzimidazole

Conditions
ConditionsYield
Multi-step reaction with 6 steps
1: 91 percent / NaOMe / 18 h
2: 2 h / 90 °C
3: 2 N aq. NaOH / 2 h / 80 °C
4: 93 percent / SOCl2 / CH2Cl2 / 2 h / 0 - 5 °C
5: 2 N aq. NaOH / ethanol / 2 h / 50 °C
6: 85 percent / m-chloroperbenzoic acid / CH2Cl2 / 0.5 h / -30 °C
View Scheme
72830-08-1

2-hydroxymethyl-3,4-dimethoxypyridine

102625-70-7

5-(difluoromethoxy)-2-[[(3,4-dimethoxy-2-pyridyl)methyl]sulfinyl]-1H-benzimidazole

Conditions
ConditionsYield
Multi-step reaction with 3 steps
1: 93 percent / SOCl2 / CH2Cl2 / 2 h / 0 - 5 °C
2: 2 N aq. NaOH / ethanol / 2 h / 50 °C
3: 85 percent / m-chloroperbenzoic acid / CH2Cl2 / 0.5 h / -30 °C
View Scheme

Pantoprazole Specification

The IUPAC name of 1H-Benzimidazole,6-(difluoromethoxy)-2-[[(3,4-dimethoxy-2-pyridinyl)methyl]sulfinyl]- is 6-(difluoromethoxy)-2-[(3,4-dimethoxypyridin-2-yl)methylsulfinyl]-1H-benzimidazole. With the CAS registry number 102625-70-7, it is also named as Pantoprazole. The product's categories are Active Pharmaceutical Ingredients; APIs; Pantoprazole. It is almost white solid.

The other characteristics of this product can be summarized as: (1)ACD/LogP: 1.69; (2)# of Rule of 5 Violations: 0; (3)ACD/LogD (pH 5.5): 1.68; (4)ACD/LogD (pH 7.4): 1.59; (5)ACD/BCF (pH 5.5): 11.13; (6)ACD/BCF (pH 7.4): 9.09; (7)ACD/KOC (pH 5.5): 194.55; (8)ACD/KOC (pH 7.4): 158.88; (9)#H bond acceptors: 7; (10)#H bond donors: 1; (11)#Freely Rotating Bonds: 7; (12)Polar Surface Area: 94.68 Å2; (13)Index of Refraction: 1.642; (14)Molar Refractivity: 91.35 cm3; (15)Molar Volume: 252.7 cm3; (16)Surface Tension: 73.4 dyne/cm; (17)Enthalpy of Vaporization: 87.64 kJ/mol; (18)Vapour Pressure: 9.37E-14 mmHg at 25°C; (19)Rotatable Bond Count: 7; (20)Tautomer Count: 2; (21)Exact Mass: 383.075133; (22)MonoIsotopic Mass: 383.075133; (23)Topological Polar Surface Area: 106; (24)Heavy Atom Count: 26; (25)Complexity: 490.

Preparation of 1H-Benzimidazole,6-(difluoromethoxy)-2-[[(3,4-dimethoxy-2-pyridinyl)methyl]sulfinyl]-: The condensation of 5-(Difluoromethoxy)-2-mercapto-1H-benzimidazole (I) and 2-(Chloromethyl)-3,4-dimethoxypyridinium hydrochloride gives compound (Ⅲ). Then, after oxidation with m-chloroperbenzoic acid, we can get the product.

Uses of 1H-Benzimidazole,6-(difluoromethoxy)-2-[[(3,4-dimethoxy-2-pyridinyl)methyl]sulfinyl]-: It is a proton pump inhibitor drug that inhibits gastric acid secretion. It is also used for short-term treatment of erosion and ulceration of the esophagus caused by gastroesophageal reflux disease.

When you are using this chemical, please be cautious about it as the following:
It is not only harmful by inhalation, in contact with skin and if swallowed, but also irritating to respiratory system and skin. And it has danger of serious damage to health by prolonged exposure. So people should not breathe dust. In case of contact with eyes, rinse immediately with plenty of water and seek medical advice. If you want to contact this product, you must wear suitable protective clothing, gloves and eye/face protection. In case of accident or if you feel unwell, seek medical advice immediately (show the label whenever possible.)

People can use the following data to convert to the molecule structure. 
1. SMILES:FC(F)Oc3cc1c(nc(n1)S(=O)Cc2nccc(OC)c2OC)cc3
2. InChI:InChI=1/C16H15F2N3O4S/c1-23-13-5-6-19-12(14(13)24-2)8-26(22)16-20-10-4-3-9(25-15(17)18)7-11(10)21-16/h3-7,15H,8H2,1-2H3,(H,20,21)

The following are the toxicity data which has been tested.

Organism Test Type Route Reported Dose (Normalized Dose) Effect Source
man TDLo oral 3mg/kg/5D-I (3mg/kg) BEHAVIORAL: MUSCLE WEAKNESS

LIVER: OTHER CHANGES
Australian and New Zealand Journal of Medicine. Vol. 29, Pg. 833, 1999.
 

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