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54-42-2

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  • 5-Iodo-2-Deoxyuridine 5-IDU CAS NO.54-42-2 Pharma intermediate worldwide TOP pharma factory vendor

    Cas No: 54-42-2

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54-42-2 Usage

Description

5-Iodo-2'-deoxyuridine is a nucleoside analog that inhibits the replication of viruses and other DNA-containing organisms. 2'-Deoxy-5-iodouridine also has inhibitory properties on cell nuclei, which may be due to its ability to bind with DNA and prevent the synthesis of RNA or protein.

Chemical Properties

Crystalline Solid

Originator

Dendrid,Alcon,US,1963

Uses

Different sources of media describe the Uses of 54-42-2 differently. You can refer to the following data:
1. Idoxuridine is an antiviral agent effective against herpes-simplex infections; in ophthalmie eyedrops, ointments, and solutions.
2. 5-Iodo-2'-deoxyuridine is antitumor nucleoside enantiomer thymidine kinase used as potential antiviral agents.
3. Antiviral;Nucleic acid synthesis inhibitors
4. A cytotoxic analog of thymidine, antiviral

Definition

ChEBI: A pyrimidine 2'-deoxyribonucleoside compound having 5-iodouracil as the nucleobase; used as an antiviral agent.

Indications

Idoxuridine (Herplex) is a water-soluble iodinated derivative of deoxyuridine that inhibits several DNA viruses including HSV, VZV, vaccinia, and polyoma virus. The triphosphorylated metabolite of idoxuridine inhibits both viral and cellular DNA synthesis and is also incorporated into DNA. Such modified DNA is susceptible to strand breakage and causes aberrant viral protein synthesis. Because of its significant host cytotoxicity, idoxuridine cannot be used to treat systemic viral infections. The development of resistance to this drug is common.

Manufacturing Process

5 g of 5-iodo-uracil (obtained according to T.B. Johnson et al., J. Biol. Chem. 1905/6, 1, 310) in 15 cc of acetic anhydride are heated under reflux for 4,5 hours. The acetylated derivative crystallizes on cooling. The crystallized product is chilled for ? hour then filtered with suction, washed with acetic anhydride and then with ether and dried. 4.5 g of 1-acetyl-5-iodo-uracil, MP 167°C, are thus obtained. 1.51 g of mercuric acetate are dissolved in 50 cc of methanol under reflux and 1.35 g of 1-acetyl-5-iodo-uracilare added. A white precipitate is soon formed. The reaction mixture is kept under reflux for % hour and then allowed to cool to room temperature. The precipitate is then filtered with suction, washed with methanol and dried. 2.1 g of monomercuric 5-iodo-uracil, MP 280°C, are thus obtained as a colorless powder, insoluble in water and the majority of the usual organic solvents, such as benzene, chloroform, alcohol, ether and acetone. 1.46 g of 5-iodo-uracil monomercuric derivative are introduced into 50 cc of chloroform and 20 to 30 cc of the solvent are distilled off under normal pressure to ensure good dehydration of the reaction medium. The mixture is cooled to room temperature and 2.59 g of 3,5-di-p-toluyl-desoxy-Dribofuranosyl chloride added. The mixture is agitated for 6 hours with glass balls, filtered, rinsed with chloroform and the filtrate is successively washed with an aqueous sodium iodide solution, with water, with a saturated solution of sodium bicarbonate and again with water. The product is dried over sodium sulfate, filtered and evaporated to dryness. The residue crystallizes in ether and yields about 600 mg of β-3',5'-di-ptoluyl-2'-desoxy-5-iodo-uridine which is recrystallized from toluene. The product is obtained as colorless crystals, soluble in chloroform and pyridine, sparingly soluble in acetone, benzene ether and alcohol, insoluble in water, MP 193°C. 206 mg of 3',5'-di-p-toluyl-2'-desoxy-5-iodo-uridineare heated at 80°C with 2.5 cc of caustic soda solution (0.4 N) for ? hour. The solution obtained is cooled, filtered and then acidified with acetic acid. The desoxy-iodo-uridine and the p-toluic acid crystallize. Ether is added to dissolve the p-toluic acid, the mixture is chilled, filtered with suction, washed with water and ether, and dried. The residue is recrystallized from water and 100 mg of 5-iodo-2'- desoxy-uridine, are obtained.

Brand name

Dendrid (Alcon); Herplex (Allergan); Stoxil (GlaxoSmithKline).

Therapeutic Function

Antiviral (ophthalmic)

Pharmaceutical Applications

A halogenated pyrimidine analog originally synthesized as an anticancer agent. Formulated in dimethylsulfoxide for topical application and as a solution for ophthalmic use. Activity is largely limited to DNA viruses, primarily HSV-1, HSV-2 and VZV. HSV-1 plaque formation in BHK 21 cells is sensitive to 6.25–25 mg/L; type 2 microplaques required 62.5–125 mg/L. RNA viruses are not affected, with the exception of oncogenic RNA viruses such as Rous sarcoma virus. Drug resistance is easily generated in vitro, and may be an obstacle to treatment. However, there is little or no crossresistance with newer nucleoside analogs. It is poorly soluble in water, and aqueous solutions are ineffective against infections other than those localized to the eye. In animals, therapeutic levels are achieved in the cornea within 30 min of ophthalmic application and persist for 4 h. Penetration is otherwise poor, with only the biologically inactive dehalogenated metabolite uracil entering the eye. The drug is too toxic for systemic administration. Contact dermatitis, punctate epithelial keratopathy, follicular conjunctivitis, ptosis, stenosis and occlusion of the puncta and keratinization of the lid margins occur in up to 14% of those receiving ophthalmic preparations. It is used in herpes keratitis, but has largely been superseded by trifluridine or aciclovir.

Biochem/physiol Actions

5-Iodo-2′-deoxyuridine prevents in vitro DNA viral replication. This is observed in herpesviruses and poxviruses It might possess teratogenic, tumor-promoting, mutagenic, and immunosuppressive properties. 5-Iodo-2′-deoxyuridine, used in topical applications, is effective against epithelial infections.

Mechanism of action

Idoxuridine is a nucleoside containing a halogenated pyrimidine and is an analogue of thymidine. It acts as an antiviral agent against DNA viruses by interfering with their replication based on the similarity of structure between thymidine and idoxuridine. Idoxuridine is first phosphorylated by the host cell virusencoded enzyme thymidine kinase to an active triphosphate form. The phosphorylated drug inhibits cellular DNA polymerase to a lesser extent than HSV DNA polymerase, which is necessary for the synthesis of viral DNA. The triphosphate form of the drug is then incorporated during viral nucleic acid synthesis by a false pairing system that replaces thymidine. When transcription occurs, faulty viral proteins are formed, resulting in defective viral particles.

Clinical Use

The only FDA-approved use of idoxuridine is in the treatment of herpes simplex infections of the eyelid, conjunctiva conjunctiva, and cornea. It is most effective against surface infections because it has little ability to penetrate the tissues of the eye. intravenous idoxuridine was designated an orphan drug for the treatment of soft tissue sarcoma.

Side effects

Idoxuridine may cause local irritation, mild edema, itching, and photophobia. Corneal clouding and small punctate defects in the corneal epithelium have been reported. Allergic reactions are rare.

Safety Profile

Moderately toxic by intraperitoneal route. Experimental teratogenic and reproductive effects. Questionable carcinogen with experimental carcinogenic data. Human mutation data reported. When heated to decomposition it emits very toxic fumes of Iand NOx.

Synthesis

Idoxuridine, 5-iodo-1-(2-deoxyyribofuranosyl)pyrimidin-2,4-(1H.3H)-dione (36.1.14), is synthesized by the following scheme. 5-Iodouracil is acylated with acetic anhydride to make 1-acetyl-5-iodouracil (36.1.11). Treating this with mercury(II) acetate gives 5-iodomonomercury uracil (36.1.12), which is reacted with 1-bromodidesoxy-D-ribofuranosyl-3,5-bis-(p-toluenesulfonate) to make a ditosyl derivative (36.1.13). Hydrolysis of the tosyl groups using sodium hydroxide and subsequent treatment of the resulting substance with acetic acid gives the desired product idoxuridine.

Veterinary Drugs and Treatments

Idoxuridine (IDU) is chemically similar to thymidine and its substitution into viral DNA causes misreading of the viral genetic code thereby inhibiting viral replication. Like trifluridine, IDU is considered virostatic rather than viricidal. IDU was found to be second to trifluridine in efficacy in vitro against common strains of feline herpes virus growing in kidney epithelial cells. IDU is extremely well tolerated in cats and this feature alone makes it the most popular antiviral currently available for use in cats with presumed or established feline herpes virus infection. Although trifluridine was shown to be more effective in vitro, the topical irritation it induces in cats frequently negates any beneficial effect that might be noted clinically. Stinging upon application is a rare feature with IDU/artificial tear preparations.

Check Digit Verification of cas no

The CAS Registry Mumber 54-42-2 includes 5 digits separated into 3 groups by hyphens. The first part of the number,starting from the left, has 2 digits, 5 and 4 respectively; the second part has 2 digits, 4 and 2 respectively.
Calculate Digit Verification of CAS Registry Number 54-42:
(4*5)+(3*4)+(2*4)+(1*2)=42
42 % 10 = 2
So 54-42-2 is a valid CAS Registry Number.

54-42-2 Well-known Company Product Price

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  • TCI America

  • (I0258)  5-Iodo-2'-deoxyuridine  >99.0%(T)

  • 54-42-2

  • 1g

  • 550.00CNY

  • Detail
  • TCI America

  • (I0258)  5-Iodo-2'-deoxyuridine  >99.0%(T)

  • 54-42-2

  • 5g

  • 1,850.00CNY

  • Detail
  • TCI America

  • (I0258)  5-Iodo-2'-deoxyuridine  >99.0%(T)

  • 54-42-2

  • 25g

  • 6,450.00CNY

  • Detail
  • Alfa Aesar

  • (A11542)  (+)-5-Iodo-2'-deoxyuridine, 98%   

  • 54-42-2

  • 1g

  • 607.0CNY

  • Detail
  • Alfa Aesar

  • (A11542)  (+)-5-Iodo-2'-deoxyuridine, 98%   

  • 54-42-2

  • 5g

  • 2453.0CNY

  • Detail
  • USP

  • (1336001)  Idoxuridine  United States Pharmacopeia (USP) Reference Standard

  • 54-42-2

  • 1336001-250MG

  • 4,662.45CNY

  • Detail

54-42-2SDS

SAFETY DATA SHEETS

According to Globally Harmonized System of Classification and Labelling of Chemicals (GHS) - Sixth revised edition

Version: 1.0

Creation Date: Aug 12, 2017

Revision Date: Aug 12, 2017

1.Identification

1.1 GHS Product identifier

Product name 5-iodo-2'-deoxyuridine

1.2 Other means of identification

Product number -
Other names Idoxuridine

1.3 Recommended use of the chemical and restrictions on use

Identified uses For industry use only.
Uses advised against no data available

1.4 Supplier's details

1.5 Emergency phone number

Emergency phone number -
Service hours Monday to Friday, 9am-5pm (Standard time zone: UTC/GMT +8 hours).

More Details:54-42-2 SDS

54-42-2Synthetic route

2'-deoxyuridine
951-78-0

2'-deoxyuridine

5-Iodo-2'-deoxyuridine
54-42-2

5-Iodo-2'-deoxyuridine

Conditions
ConditionsYield
With iodine; silver nitrate In methanol at 40℃; for 3h;100%
With iodine; silver nitrate In methanol at 40℃; for 3h;100%
With sodium azide; Iodine monochloride In acetonitrile at 25℃; for 24h; Product distribution; Mechanism; other uracil nucleosides; other halogenation agents; var. temp. and time;96%
3',5'-O-diacetyl-5-iodo-2'-deoxyuridine
1956-30-5

3',5'-O-diacetyl-5-iodo-2'-deoxyuridine

5-Iodo-2'-deoxyuridine
54-42-2

5-Iodo-2'-deoxyuridine

Conditions
ConditionsYield
With sodium methylate In methanol for 1h; Ambient temperature;90%
With methanol; sodium methylate at 20℃; for 1h;
5-trimethylstannyl-2'-deoxyuridine
146629-34-7

5-trimethylstannyl-2'-deoxyuridine

5-Iodo-2'-deoxyuridine
54-42-2

5-Iodo-2'-deoxyuridine

Conditions
ConditionsYield
With sodium hydroxide; dihydrogen peroxide; acetic acid; sodium iodide In chloroform for 0.00416667h; Irradiation;
C23H17Cl2IN2O7

C23H17Cl2IN2O7

5-Iodo-2'-deoxyuridine
54-42-2

5-Iodo-2'-deoxyuridine

Conditions
ConditionsYield
With ammonia In methanol at 30℃; for 16h;
2'-deoxyuridine
951-78-0

2'-deoxyuridine

5-iodouracil
696-07-1

5-iodouracil

5-Iodo-2'-deoxyuridine
54-42-2

5-Iodo-2'-deoxyuridine

Conditions
ConditionsYield
at 37℃; for 6h; alginate gel-entrapped cells of auxotrophic thymine-dependent strain of E. coli, ammonium acetate buffer pH 5.8;
5-iodouracil
696-07-1

5-iodouracil

thymidine
50-89-5

thymidine

A

5-Iodo-2'-deoxyuridine
54-42-2

5-Iodo-2'-deoxyuridine

B

thymin
65-71-4

thymin

Conditions
ConditionsYield
With thymidine phosphorylase from Escherichia coli In phosphate buffer at 35℃; for 2h; pH=7.0; Title compound not separated from byproducts;A 88 % Chromat.
B n/a
3',5'-di-O-acetyl-2'-deoxyuridine
13030-62-1

3',5'-di-O-acetyl-2'-deoxyuridine

5-Iodo-2'-deoxyuridine
54-42-2

5-Iodo-2'-deoxyuridine

Conditions
ConditionsYield
Multi-step reaction with 2 steps
1: 93 percent / LiI, ceric ammonium nitrate (CAN) / acetonitrile / 1 h / 80 °C / other conditions and reagents investigated
2: 90 percent / 0.1 M NaOMe / methanol / 1 h / Ambient temperature
View Scheme
C5-chloromercuri-2'-deoxyuridine
65505-76-2

C5-chloromercuri-2'-deoxyuridine

1,3,4,6-tetrachloro-3α,6α-diphenyl glycoluril
51592-06-4

1,3,4,6-tetrachloro-3α,6α-diphenyl glycoluril

5-Iodo-2'-deoxyuridine
54-42-2

5-Iodo-2'-deoxyuridine

Conditions
ConditionsYield
With sodium iodide In water
2'-deoxyuridine
951-78-0

2'-deoxyuridine

5-iodouracil
696-07-1

5-iodouracil

A

5-Iodo-2'-deoxyuridine
54-42-2

5-Iodo-2'-deoxyuridine

B

uracil
66-22-8

uracil

Conditions
ConditionsYield
With thymidine phosphorylase from Escherichia coli (E.C. 2.4.2.4) immobilized on Sepabeads EC-EP In aq. phosphate buffer at 20℃; for 3h; pH=7.5; Reagent/catalyst; Enzymatic reaction;
3',5'-di-O-acetyl-2'-deoxyuridine
13030-62-1

3',5'-di-O-acetyl-2'-deoxyuridine

A

5-Iodo-2'-deoxyuridine
54-42-2

5-Iodo-2'-deoxyuridine

B

C9H11IN2O5S

C9H11IN2O5S

C

C18H20I2N4O8S2

C18H20I2N4O8S2

D

C18H21IN4O8S2

C18H21IN4O8S2

E

2'-deoxy-4-thiouridine
5580-20-1

2'-deoxy-4-thiouridine

Conditions
ConditionsYield
Multi-step reaction with 4 steps
1: ammonium cerium (IV) nitrate; iodine / acetonitrile / 1 h / 80 °C
2: tetraphosphorus decasulfide / 1,4-dioxane / Reflux
3: sodium hydride / methanol / 0.17 h / 0 - 20 °C
4: aq. phosphate buffer; tert-butyl alcohol / Radiolysis
View Scheme
3',5'-O-diacetyl-5-iodo-2'-deoxyuridine
1956-30-5

3',5'-O-diacetyl-5-iodo-2'-deoxyuridine

A

5-Iodo-2'-deoxyuridine
54-42-2

5-Iodo-2'-deoxyuridine

B

C9H11IN2O5S

C9H11IN2O5S

C

C18H20I2N4O8S2

C18H20I2N4O8S2

D

C18H21IN4O8S2

C18H21IN4O8S2

E

2'-deoxy-4-thiouridine
5580-20-1

2'-deoxy-4-thiouridine

Conditions
ConditionsYield
Multi-step reaction with 3 steps
1: tetraphosphorus decasulfide / 1,4-dioxane / Reflux
2: sodium hydride / methanol / 0.17 h / 0 - 20 °C
3: aq. phosphate buffer; tert-butyl alcohol / Radiolysis
View Scheme
5-iodo-4-thio-2'-deoxyuridine
1313407-40-7

5-iodo-4-thio-2'-deoxyuridine

A

5-Iodo-2'-deoxyuridine
54-42-2

5-Iodo-2'-deoxyuridine

B

C9H11IN2O5S

C9H11IN2O5S

C

C18H20I2N4O8S2

C18H20I2N4O8S2

D

C18H21IN4O8S2

C18H21IN4O8S2

E

2'-deoxy-4-thiouridine
5580-20-1

2'-deoxy-4-thiouridine

Conditions
ConditionsYield
In aq. phosphate buffer; tert-butyl alcohol Radiolysis;
2'-deoxyuridine
951-78-0

2'-deoxyuridine

A

5-Iodo-2'-deoxyuridine
54-42-2

5-Iodo-2'-deoxyuridine

B

C9H11IN2O5S

C9H11IN2O5S

C

C18H20I2N4O8S2

C18H20I2N4O8S2

D

C18H21IN4O8S2

C18H21IN4O8S2

E

2'-deoxy-4-thiouridine
5580-20-1

2'-deoxy-4-thiouridine

Conditions
ConditionsYield
Multi-step reaction with 5 steps
1: pyridine / 24 h / 20 °C
2: ammonium cerium (IV) nitrate; iodine / acetonitrile / 1 h / 80 °C
3: tetraphosphorus decasulfide / 1,4-dioxane / Reflux
4: sodium hydride / methanol / 0.17 h / 0 - 20 °C
5: aq. phosphate buffer; tert-butyl alcohol / Radiolysis
View Scheme
5-iodouracil
696-07-1

5-iodouracil

thymidine
50-89-5

thymidine

5-Iodo-2'-deoxyuridine
54-42-2

5-Iodo-2'-deoxyuridine

Conditions
ConditionsYield
With recobinant purine nucleoside phosphorylase from Escherichia coli In aq. phosphate buffer pH=6.8; Heating; Enzymatic reaction;
C5H9O7P(2-)*2K(1+)

C5H9O7P(2-)*2K(1+)

5-iodouracil
696-07-1

5-iodouracil

5-Iodo-2'-deoxyuridine
54-42-2

5-Iodo-2'-deoxyuridine

Conditions
ConditionsYield
With E-pyrimidine nucleoside phosphorylase-0002 In aq. buffer at 50℃; for 2h; pH=9; Equilibrium constant; Enzymatic reaction;
5-Iodo-2'-deoxyuridine
54-42-2

5-Iodo-2'-deoxyuridine

acrylic acid methyl ester
292638-85-8

acrylic acid methyl ester

methyl (E)-3-(1-((2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl)-2,4-dioxo-1,2,3,4-tetrahydropyrimidin-5-yl)acrylate
86163-17-9

methyl (E)-3-(1-((2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl)-2,4-dioxo-1,2,3,4-tetrahydropyrimidin-5-yl)acrylate

Conditions
ConditionsYield
With palladium diacetate; triethylamine; triphenylphosphine In 1,4-dioxane for 14h; Heating;100%
Stage #1: 5-Iodo-2'-deoxyuridine With C26H32N8O6P2PdS2 In acetonitrile at 80℃; for 0.0833333h; Heck Reaction; Inert atmosphere;
Stage #2: acrylic acid methyl ester With triethylamine In acetonitrile at 80℃; for 8h; Heck Reaction; Inert atmosphere;
92%
With palladium diacetate; triethylamine; triphenylphosphine In N,N-dimethyl-formamide at 100℃; for 1h;87%
9-ethynyl-closo-1,7-dodecaborane
80755-88-0

9-ethynyl-closo-1,7-dodecaborane

5-Iodo-2'-deoxyuridine
54-42-2

5-Iodo-2'-deoxyuridine

5-[(1,7-dicarba-closo-dodecaboran-9-yl)ethyn-1-yl]-2′-deoxyuridine

5-[(1,7-dicarba-closo-dodecaboran-9-yl)ethyn-1-yl]-2′-deoxyuridine

Conditions
ConditionsYield
With copper(l) iodide; tetrakis(triphenylphosphine) palladium(0); triethylamine In N,N-dimethyl-formamide at 80℃; Sonogashira Cross-Coupling; Inert atmosphere;100%
5-Iodo-2'-deoxyuridine
54-42-2

5-Iodo-2'-deoxyuridine

tert-butyldimethylsilyl chloride
18162-48-6

tert-butyldimethylsilyl chloride

2'-deoxy-3',5'-bis(O-tert-butyldimethylsilyl)-5-iodouridine
148134-86-5

2'-deoxy-3',5'-bis(O-tert-butyldimethylsilyl)-5-iodouridine

Conditions
ConditionsYield
With 1H-imidazole In pyridine for 33h;99%
With 1H-imidazole In N,N-dimethyl-formamide at 20℃; for 3h;99.8%
With 1H-imidazole In N,N-dimethyl-formamide at 20℃; for 60h;99%
4,4'-dimethoxytrityl chloride
40615-36-9

4,4'-dimethoxytrityl chloride

5-Iodo-2'-deoxyuridine
54-42-2

5-Iodo-2'-deoxyuridine

2'-deoxy-5'-O-(4,4'-dimethoxytrityl)-5-iodouridine
104375-88-4

2'-deoxy-5'-O-(4,4'-dimethoxytrityl)-5-iodouridine

Conditions
ConditionsYield
With pyridine Ambient temperature;99%
With pyridine; triethylamine at 20℃; for 1h;98%
With pyridine In triethylamine at 20℃; for 5h;96%
5-Iodo-2'-deoxyuridine
54-42-2

5-Iodo-2'-deoxyuridine

acetic anhydride
108-24-7

acetic anhydride

3',5'-O-diacetyl-5-iodo-2'-deoxyuridine
1956-30-5

3',5'-O-diacetyl-5-iodo-2'-deoxyuridine

Conditions
ConditionsYield
With pyridine at 20℃; for 16.5h;99%
With pyridine at 20℃;98%
With pyridine at 25℃; for 20h;97%
3,3-bis-(trifluoromethyl)-4,4,4-trifluoro-1-butyne
14115-48-1

3,3-bis-(trifluoromethyl)-4,4,4-trifluoro-1-butyne

5-Iodo-2'-deoxyuridine
54-42-2

5-Iodo-2'-deoxyuridine

5-(4,4,4-trifluoro-3,3-bis(trifluoromethyl)but-1-ynyl)-2'-deoxyuridine
1032735-58-2

5-(4,4,4-trifluoro-3,3-bis(trifluoromethyl)but-1-ynyl)-2'-deoxyuridine

Conditions
ConditionsYield
With copper(l) iodide; tetrakis(triphenylphosphine) palladium(0); N-ethyl-N,N-diisopropylamine In N,N-dimethyl-formamide at 22℃; for 96h; Sonogashira coupling; Inert atmosphere;98%
acrylic acid n-butyl ester
141-32-2

acrylic acid n-butyl ester

5-Iodo-2'-deoxyuridine
54-42-2

5-Iodo-2'-deoxyuridine

(E)-5-[2-(n-butyloxycarbonyl)vinyl]-2′-deoxyuridine

(E)-5-[2-(n-butyloxycarbonyl)vinyl]-2′-deoxyuridine

Conditions
ConditionsYield
With 3,3′,3″-phosphinetriyltribenzenesulfonate; palladium diacetate; triethylamine In water; acetonitrile at 80℃; for 1.5h; Solvent; Temperature; Reagent/catalyst; Inert atmosphere;98%
With tri(3-sulfonatophenyl)phosphine trisodium salt; palladium diacetate; triethylamine In water; acetonitrile at 80℃; Heck reaction; Inert atmosphere;74%
methanol
67-56-1

methanol

carbon monoxide
201230-82-2

carbon monoxide

5-Iodo-2'-deoxyuridine
54-42-2

5-Iodo-2'-deoxyuridine

5-methoxycarbonyl-2’-deoxyuridine

5-methoxycarbonyl-2’-deoxyuridine

Conditions
ConditionsYield
With tris-(dibenzylideneacetone)dipalladium(0); triethylamine; triphenylphosphine In N,N-dimethyl-formamide at 70℃;98%
1,3-Dichloro-1,1,3,3-tetraisopropyldisiloxane
69304-37-6

1,3-Dichloro-1,1,3,3-tetraisopropyldisiloxane

5-Iodo-2'-deoxyuridine
54-42-2

5-Iodo-2'-deoxyuridine

5-iodo-3',5'-O-[(tetraisopropyl)disiloxane-1,3-diyl]-2'-deoxyuridine
129507-76-2

5-iodo-3',5'-O-[(tetraisopropyl)disiloxane-1,3-diyl]-2'-deoxyuridine

Conditions
ConditionsYield
With 1H-imidazole In N,N-dimethyl-formamide for 12h;97%
With pyridine at 20℃;97%
With pyridine at 20℃;84%
With 1H-imidazole In N,N-dimethyl-formamide at 20℃; for 3h; silylation;
5-Iodo-2'-deoxyuridine
54-42-2

5-Iodo-2'-deoxyuridine

phenylboronic acid
98-80-6

phenylboronic acid

1-((2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl)-5-phenylpyrimidine-2,4(1H,3H)-dione
76756-28-0

1-((2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl)-5-phenylpyrimidine-2,4(1H,3H)-dione

Conditions
ConditionsYield
With palladium diacetate; sodium carbonate; triphenylphosphine In water; acetonitrile at 70 - 80℃; for 4h; Suzuki-Miyaura Coupling; Inert atmosphere;97%
With palladium diacetate; sodium carbonate; triphenylphosphine In water; acetonitrile at 70 - 80℃; for 4h; Suzuki-Miyaura Coupling; Inert atmosphere;97%
With C30H24Cl2N2O10Pd2S2(2-)*2Na(1+); triethylamine In water at 60℃; for 3h; Suzuki-Miyaura Coupling; Inert atmosphere; Schlenk technique;93%
2-ethynylpyridine
1945-84-2

2-ethynylpyridine

5-Iodo-2'-deoxyuridine
54-42-2

5-Iodo-2'-deoxyuridine

5-(2-pyridylethynyl)-2'-deoxyuridine
78824-48-3

5-(2-pyridylethynyl)-2'-deoxyuridine

Conditions
ConditionsYield
With copper(l) iodide; tetrakis(triphenylphosphine) palladium(0); N-ethyl-N,N-diisopropylamine In N,N-dimethyl-formamide at 20℃; Inert atmosphere;97%
1-Heptene
592-76-7

1-Heptene

5-Iodo-2'-deoxyuridine
54-42-2

5-Iodo-2'-deoxyuridine

5-(hept-1-en-1-yl)-2'-deoxyuridine
96962-44-6

5-(hept-1-en-1-yl)-2'-deoxyuridine

Conditions
ConditionsYield
With tributyl-amine; palladium diacetate In N,N-dimethyl-formamide at 100℃; for 0.333333h; Heck reaction; Microwave irradiation;97%
With tributyl-amine; palladium diacetate In 1,4-dioxane; N,N-dimethyl-formamide at 100℃; for 0.333333h; Microwave irradiation;97%
5-Iodo-2'-deoxyuridine
54-42-2

5-Iodo-2'-deoxyuridine

2-(tri-n-butylstannyl)benzofuran

2-(tri-n-butylstannyl)benzofuran

5-(benzofuran-2-yl)-1-((2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl)pyrimidine-2,4(1H,3H)-dione
1449768-52-8

5-(benzofuran-2-yl)-1-((2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl)pyrimidine-2,4(1H,3H)-dione

Conditions
ConditionsYield
With bis-triphenylphosphine-palladium(II) chloride In 1,4-dioxane at 90℃; Stille Cross Coupling;97%
5-Iodo-2'-deoxyuridine
54-42-2

5-Iodo-2'-deoxyuridine

but-1-yn-4-yl thiobenzoate
211510-45-1

but-1-yn-4-yl thiobenzoate

5-(4-benzoylthio-1-butynyl)-2'-deoxyuridine
647852-33-3

5-(4-benzoylthio-1-butynyl)-2'-deoxyuridine

Conditions
ConditionsYield
With copper(l) iodide; triethylamine; tetrakis(triphenylphosphine) palladium(0) In N,N-dimethyl-formamide at 22 - 24℃;96%
5-Iodo-2'-deoxyuridine
54-42-2

5-Iodo-2'-deoxyuridine

acetyl chloride
75-36-5

acetyl chloride

3',5'-O-diacetyl-5-iodo-2'-deoxyuridine
1956-30-5

3',5'-O-diacetyl-5-iodo-2'-deoxyuridine

Conditions
ConditionsYield
With acetic anhydride; acetic acid 1.) 0 deg C, 1 h, 2.) RT, 24 h;95%
5-Iodo-2'-deoxyuridine
54-42-2

5-Iodo-2'-deoxyuridine

dimethyl sulfate
77-78-1

dimethyl sulfate

5-iodo-3-methyl-2′-deoxyuridine
35695-25-1

5-iodo-3-methyl-2′-deoxyuridine

Conditions
ConditionsYield
With tetrabutyl ammonium fluoride In tetrahydrofuran at 20℃; for 0.166667h;95%
5-Iodo-2'-deoxyuridine
54-42-2

5-Iodo-2'-deoxyuridine

3-methyl-N-(prop-2-yn-1-yl)butanamide
422284-33-1

3-methyl-N-(prop-2-yn-1-yl)butanamide

5-[3-(3-methylbutyrylamino)prop-1-ynyl]-2'-deoxyuridine

5-[3-(3-methylbutyrylamino)prop-1-ynyl]-2'-deoxyuridine

Conditions
ConditionsYield
With copper(l) iodide; tetrakis(triphenylphosphine) palladium(0); triethylamine In N,N-dimethyl-formamide at 20℃; for 4h;95%
5-Iodo-2'-deoxyuridine
54-42-2

5-Iodo-2'-deoxyuridine

diphenylphosphane
829-85-6

diphenylphosphane

5-diphenylphosphine-2'-deoxyuridine
939057-19-9

5-diphenylphosphine-2'-deoxyuridine

Conditions
ConditionsYield
With triethylamine; palladium diacetate In N,N-dimethyl-formamide at 60℃; for 0.5h;95%
3-methoxyphenylboronic acid
10365-98-7

3-methoxyphenylboronic acid

5-Iodo-2'-deoxyuridine
54-42-2

5-Iodo-2'-deoxyuridine

5-(3-methoxyphenyl)-2'-deoxyuridine
92510-79-7

5-(3-methoxyphenyl)-2'-deoxyuridine

Conditions
ConditionsYield
With tetrakis(triphenylphosphine) palladium(0); cesium fluoride In water; N,N-dimethyl-formamide at 60℃; Suzuki cross-coupling; Inert atmosphere;95%
With [Pd(phthalimidate)2(1,3,5-triaza-7-phosphaadamantane)2]; triethylamine In water at 20 - 80℃; for 6h; Suzuki-Miyaura Coupling; Inert atmosphere;
4-tert-Butylphenylacetylene
772-38-3

4-tert-Butylphenylacetylene

5-Iodo-2'-deoxyuridine
54-42-2

5-Iodo-2'-deoxyuridine

5-((4-tert-butylphenyl)ethynyl)-2'-deoxyuridine
596107-17-4

5-((4-tert-butylphenyl)ethynyl)-2'-deoxyuridine

Conditions
ConditionsYield
With copper(l) iodide; triethylamine; tetrakis(triphenylphosphine) palladium(0) In N,N-dimethyl-formamide at 40℃; for 25h; Sonogashira coupling;94%
With copper(l) iodide; tetra-(n-butyl)ammonium iodide; triphenylphosphine; tetrakis(triphenylphosphine) palladium(0); triethylamine In N,N-dimethyl-formamide at 20℃; for 24h; Sonogashira coupling;76%
With copper(l) iodide; triethylamine; tetrakis(triphenylphosphine) palladium(0) In N,N-dimethyl-formamide
5-Iodo-2'-deoxyuridine
54-42-2

5-Iodo-2'-deoxyuridine

2-(tributylstannyl)furan
118486-94-5

2-(tributylstannyl)furan

5-furan-2-yl-1-(β-D-2-deoxyribofuranos-1-yl)uracil
92233-50-6

5-furan-2-yl-1-(β-D-2-deoxyribofuranos-1-yl)uracil

Conditions
ConditionsYield
With bis-triphenylphosphine-palladium(II) chloride In 1,4-dioxane at 90℃; for 2h; Stille coupling;94%
bis-triphenylphosphine-palladium(II) chloride In 1,4-dioxane at 90℃; for 2h; Stille coupling;94%
With bis-triphenylphosphine-palladium(II) chloride In 1,4-dioxane94%
With bis-triphenylphosphine-palladium(II) chloride In 1,4-dioxane at 90℃; Stille Cross Coupling;
5-Iodo-2'-deoxyuridine
54-42-2

5-Iodo-2'-deoxyuridine

1-Ethynyl-1-cyclohexanol
78-27-3

1-Ethynyl-1-cyclohexanol

5-((1-hydroxycyclohexyl)ethynyl)-2'-deoxyuridine
936332-87-5

5-((1-hydroxycyclohexyl)ethynyl)-2'-deoxyuridine

Conditions
ConditionsYield
With copper(l) iodide; triethylamine; tetrakis(triphenylphosphine) palladium(0) In N,N-dimethyl-formamide at 50℃; for 7h; Sonogashira coupling;94%
With copper(l) iodide; triethylamine; tetrakis(triphenylphosphine) palladium(0) In N,N-dimethyl-formamide
2-Methylphenylboronic acid
16419-60-6

2-Methylphenylboronic acid

5-Iodo-2'-deoxyuridine
54-42-2

5-Iodo-2'-deoxyuridine

5-(2-methylphenyl)-2'-deoxyuridine
1373213-45-6

5-(2-methylphenyl)-2'-deoxyuridine

Conditions
ConditionsYield
With sodium tetrachloropalladate; trisodium tris(3-sulfophenyl)phosphine; potassium hydroxide In water at 100℃; for 24h; Suzuki-Miyaura coupling; Inert atmosphere;94%
With sodium tetrachloropalladate(II); potassium hydroxide In water at 100℃; for 1h; Suzuki-Miyaura Coupling; Inert atmosphere; Microwave irradiation;30%
With sodium tetrachloropalladate(II); potassium hydroxide In water at 100℃; for 24h; Concentration; Time; Suzuki-Miyaura Coupling; Inert atmosphere; Green chemistry;22%
benzofuran-2-boronic acid
98437-24-2

benzofuran-2-boronic acid

5-Iodo-2'-deoxyuridine
54-42-2

5-Iodo-2'-deoxyuridine

5-(benzofuran-2-yl)-1-((2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl)pyrimidine-2,4(1H,3H)-dione
1449768-52-8

5-(benzofuran-2-yl)-1-((2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl)pyrimidine-2,4(1H,3H)-dione

Conditions
ConditionsYield
With [Pd(succinimidate)2(1,3,5-triaza-7-phosphaadamantane)2]; triethylamine In water at 80℃; for 0.0833333h; Catalytic behavior; Concentration; Suzuki-Miyaura Coupling; Microwave irradiation; Inert atmosphere;94%
With C30H24Cl2N2O10Pd2S2(2-)*2Na(1+); triethylamine In water at 60℃; for 3h; Solvent; Reagent/catalyst; Temperature; Suzuki-Miyaura Coupling; Inert atmosphere; Schlenk technique;89%
5-Iodo-2'-deoxyuridine
54-42-2

5-Iodo-2'-deoxyuridine

propionic acid anhydride
123-62-6

propionic acid anhydride

3′,5′-bis-O-propionyl-5-iodo-2′-deoxyuridine
4833-05-0

3′,5′-bis-O-propionyl-5-iodo-2′-deoxyuridine

Conditions
ConditionsYield
With pyridine at 60℃; for 8h; Inert atmosphere;93%
With pyridine85%
5-Iodo-2'-deoxyuridine
54-42-2

5-Iodo-2'-deoxyuridine

tri-n-butyl(vinyl)tin
7486-35-3

tri-n-butyl(vinyl)tin

5-vinyl-2'-deoxyuridine
55520-67-7

5-vinyl-2'-deoxyuridine

Conditions
ConditionsYield
With tetrakis(triphenylphosphine) palladium(0) In tetrahydrofuran for 12h; Inert atmosphere; Reflux;92%
With bis-triphenylphosphine-palladium(II) chloride In tetrahydrofuran for 24h; Inert atmosphere; Reflux;50%
With bis-triphenylphosphine-palladium(II) chloride In tetrahydrofuran for 24h; Heating;47%
5-Iodo-2'-deoxyuridine
54-42-2

5-Iodo-2'-deoxyuridine

trimethylsilylacetylene
1066-54-2

trimethylsilylacetylene

1-(2-deoxy-β-D-ribofuranosyl)-5-[2-(trimethylsilyl)ethynyl]uracil
151362-01-5

1-(2-deoxy-β-D-ribofuranosyl)-5-[2-(trimethylsilyl)ethynyl]uracil

Conditions
ConditionsYield
With copper(l) iodide; triethylamine; tetrakis(triphenylphosphine) palladium(0) In N,N-dimethyl-formamide at 55℃; for 24h; Sonogashira coupling;92%
With bis-triphenylphosphine-palladium(II) chloride; copper(l) iodide; triethylamine In acetonitrile at 50℃; for 3.5h; Schlenk technique; Inert atmosphere;85%
With bis-triphenylphosphine-palladium(II) chloride; copper(l) iodide; triethylamine In acetonitrile for 3.5h; Inert atmosphere; Heating;82%
4-fluoroboronic acid
1765-93-1

4-fluoroboronic acid

5-Iodo-2'-deoxyuridine
54-42-2

5-Iodo-2'-deoxyuridine

5-(4'-fluorophenyl)-2'-deoxyuridine

5-(4'-fluorophenyl)-2'-deoxyuridine

Conditions
ConditionsYield
With palladium diacetate; sodium carbonate; tris-(m-sulfonatophenyl)phosphine In water; acetonitrile at 80℃; Suzuki coupling;92%
With tetrakis(triphenylphosphine) palladium(0); cesium fluoride In water; N,N-dimethyl-formamide at 60℃; Suzuki cross-coupling; Inert atmosphere;78%
With palladium diacetate; sodium carbonate; triphenylphosphine In water at 120℃; for 0.166667h; Suzuki-Miyaura Coupling; Inert atmosphere; Sealed tube; Microwave irradiation;74%
With [Pd(phthalimidate)2(1,3,5-triaza-7-phosphaadamantane)2]; triethylamine In water at 20 - 80℃; for 6h; Suzuki-Miyaura Coupling; Inert atmosphere;
methyl 3-ethynylbenzoate
10602-06-9

methyl 3-ethynylbenzoate

5-Iodo-2'-deoxyuridine
54-42-2

5-Iodo-2'-deoxyuridine

3-[3-((2R,4S,5R)-4-Hydroxy-5-hydroxymethyl-tetrahydro-furan-2-yl)-2-oxo-2,3-dihydro-furo[2,3-d]pyrimidin-6-yl]-benzoic acid methyl ester

3-[3-((2R,4S,5R)-4-Hydroxy-5-hydroxymethyl-tetrahydro-furan-2-yl)-2-oxo-2,3-dihydro-furo[2,3-d]pyrimidin-6-yl]-benzoic acid methyl ester

Conditions
ConditionsYield
With copper(l) iodide; triethylamine; tetrakis(triphenylphosphine) palladium(0) In tetrahydrofuran at 55℃; for 12h;92%

54-42-2Relevant articles and documents

Thermodynamic Reaction Control of Nucleoside Phosphorolysis

Kaspar, Felix,Giessmann, Robert T.,Neubauer, Peter,Wagner, Anke,Gimpel, Matthias

supporting information, p. 867 - 876 (2020/01/24)

Nucleoside analogs represent a class of important drugs for cancer and antiviral treatments. Nucleoside phosphorylases (NPases) catalyze the phosphorolysis of nucleosides and are widely employed for the synthesis of pentose-1-phosphates and nucleoside analogs, which are difficult to access via conventional synthetic methods. However, for the vast majority of nucleosides, it has been observed that either no or incomplete conversion of the starting materials is achieved in NPase-catalyzed reactions. For some substrates, it has been shown that these reactions are reversible equilibrium reactions that adhere to the law of mass action. In this contribution, we broadly demonstrate that nucleoside phosphorolysis is a thermodynamically controlled endothermic reaction that proceeds to a reaction equilibrium dictated by the substrate-specific equilibrium constant of phosphorolysis, irrespective of the type or amount of NPase used, as shown by several examples. Furthermore, we explored the temperature-dependency of nucleoside phosphorolysis equilibrium states and provide the apparent transformed reaction enthalpy and apparent transformed reaction entropy for 24 nucleosides, confirming that these conversions are thermodynamically controlled endothermic reactions. This data allows calculation of the Gibbs free energy and, consequently, the equilibrium constant of phosphorolysis at any given reaction temperature. Overall, our investigations revealed that pyrimidine nucleosides are generally more susceptible to phosphorolysis than purine nucleosides. The data disclosed in this work allow the accurate prediction of phosphorolysis or transglycosylation yields for a range of pyrimidine and purine nucleosides and thus serve to empower further research in the field of nucleoside biocatalysis. (Figure presented.).

5-iodo-4-thio-2′-deoxyuridine as a sensitizer of X-ray induced cancer cell killing

Makurat, Samanta,Spisz, Paulina,Kozak, Witold,Rak, Janusz,Zdrowowicz, Magdalena

, (2019/05/10)

Nucleosides, especially pyrimidines modified in the C5-position, can act as radiosensitizers via a mechanism that involves their enzymatic triphosphorylation, incorporation into DNA, and a subsequent dissociative electron attachment (DEA) process. In this paper, we report 5-iodo-4-thio-2′-deoxyuridine (ISdU) as a compound that can effectively lead to ionizing radiation (IR)-induced cellular death, which is proven by a clonogenic assay. The test revealed that the survival of cells, pre-treated with 10 or 100 μM solution of ISdU and exposed to 0.5 Gy of IR, was reduced from 78.4% (for non-treated culture) to 67.7% and to 59.8%, respectively. For a somewhat higher dose of 1 Gy, the surviving fraction was reduced from 68.2% to 54.9% and to 40.8% for incubation with 10 or 100 μM ISdU, respectively. The cytometric analysis of histone H2A.X phosphorylation showed that the radiosensitizing effect of ISdU was associated, at least in part, with the formation of double-strand breaks. Moreover, the cytotoxic test against the MCF-7 breast cancer cell line and human dermal fibroblasts (HDFa line) confirmed low cytotoxic activity of ISdU. Based on the results of steady state radiolysis of ISdU with a dose of 140 Gy and quantum chemical calculations explaining the origin of the MS detected radioproducts, the molecular mechanism of sensitization by ISdU was proposed. In conclusion, we found ISdU to be a potential radiosensitizer that could improve anticancer radiotherapy.

Site-specific incorporation of multiple units of functional nucleotides into DNA using a step-wise approach with polymerase and its application to monitoring DNA structural changes

Huy Le, Binh,Nguyen, Van Thang,Seo, Young Jun

supporting information, p. 2158 - 2161 (2019/02/20)

We have developed a new method, a step-wise approach with polymerase, for site-specific incorporation of multiple units of functional nucleotides into DNA to form hairpin secondary structures. The fluorescence of the resulting DNA incorporating the functional nucleotides varied upon transitioning from single-strand to hairpin and duplex structures.

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