A. B. Beshir et al. / Bioorg. Med. Chem. Lett. 18 (2008) 498–504
503
Clearly, differences in coordination geometry cannot ex-
plain the differences in bioactivity between the
complexes.
References and notes
1. Meggers, E. Curr. Opin. Chem. Biol. 2007, 11, 287.
2. Mc Henry, K. T.; Ankala, S. V.; Ghosh, A. K.; Fenteany,
G. ChemBioChem 2002, 11, 1105.
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Chem. Biol. 2005, 12, 981.
4. Kahsai, A. W.; Zhu, S.; Wardrop, D. J.; Lane, W. S.;
Fenteany, G. Chem. Biol. 2006, 13, 973.
5. Vogt, A.; Cooley, K. A.; Brisson, M.; Tarpley, M. G.;
Wipf, P.; Lazo, J. S. Chem. Biol. 2003, 10, 733.
6. Hossain, M. E.; Alam, M. N.; Ali, M. A.; Nazimuddin,
M.; Smith, F. E.; Hynes, R. C. Polyhedron 1995, 15, 973.
7. Bharti, N.; Maurya, M. R.; Naqvi, F.; Azam, A. Bioorg.
Med. Chem. Lett. 2000, 10, 2243.
8. Neelam, B.; Mannar, M.; Fehmida, N.; Alok, B.; Sudha,
B.; Amir, A. Eur. J. Med. Chem 2000, 35, 481.
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39, 1785.
The Cu2Cl2(L1)2 and Zn(L1)2 complexes do, however,
share a common conformational feature. Both these
bioactive complexes exhibit a transoid orientation of
the sulfides with respect to the central metal-coordinated
rings; note the S–C bonds of the two S-benzyl groups
relative to the S–C bonds of the coordinated rings
(Fig. 3a and b). The Zn(II) complex of nor-L1 also
adopts a transoid conformation.15 The S-benzyl groups
of the Cu2Cl2(L1)2 and Zn(L1)2 complexes point in
opposite directions, despite the difference in metal stoi-
chiometry and coordination geometry. In contrast, the
biologically inactive Ni(L1)2 complex possesses a cisoid
orientation of the sulfides relative to the Ni(II)-coordi-
nated rings, with the S-benzyl groups in closer proximity
to one another (Fig. 3c).
11. Hossain, M. E.; Begum, J.; Alam, M. N.; Nazimuddin,
M.; Ali, M. A. Transition Met. Chem. 1993, 18, 497.
12. Mikel, C.; Potvin, P. G. Polyhedron 2002, 21, 49.
13. A mixture of each prepared S-alkyl dithiocarbazate and 2-
acetylpyridine (or 2-acetylisonicotinic acid in the case of
synthesis of L6) in a 1:1 molar ratio in absolute ethanol
was boiled for 2 h.9–11 Precipitates of the Schiff bases were
deposited from the mixture upon cooling in ice. The
precipitates were filtered off, washed with ice-cold ethanol,
and dried in vacuo (yield = 50–80%). L6 was prepared by
hydrolysis of the methyl ester of methyl 2-acetylisonico-
tinate,12 followed by reaction with S-benzyl dithiocarbaz-
ate as above. To prepare each metal(II) complex, an
equimolar mixture of Schiff base ligand and CuCl2, ZnCl2
or NiCl2 in absolute ethanol was heated at 60 °C (oil-bath
temperature) for 10 min. Precipitates of each complex
formed upon cooling to room temperature. The precipi-
tates were filtered off, washed with ice-cold ethanol,
crystallized in acetonitrile, and dried in vacuo
(yield = 40–54%). NMR spectra were acquired for all free
ligands, as well as the Zn(L1)2 and Ni(L1)2 complexes.
(Note: The four pyridyl protons appeared duplicated by
1H NMR for the free ligands L1, L2, and L3 in CDCl3,
possibly as a consequence of thione–thiol tautomerism;
more directly consistent with this possibility, we observed
broadened and weakened NH proton signal, although we
were unable to clearly identify SH proton resonance.) LC-
ESIMS was performed in methanol.
Energy minimization via density functional theory
(DFT) calculations,16,17 both in vacuum and implicit
water solvent, resulted in structures that were substan-
tially similar to the X-ray crystal structures (Fig. 3).
The DFT calculations thus suggest that the conforma-
tions the complexes assume as crystals are likely to be
close to the lowest-energy conformations they would
adopt in solution. We calculated that the transoid con-
formation of Cu2Cl2(L1)2, for example, would be
7.6 kcal/mol more stable than the cisoid conformation.
Interestingly, there is an even stronger preference in sil-
ico for a transoid conformation when the S-benzyl
groups of Cu2Cl2(L1)2 are replaced with O-benzyl
groups, with transoid favored over cisoid by 12.3 kcal/
mol.
The data presented here imply that the pharmacophore
of NSC 295642 and related metal–ligand complexes is
at least in part formed by hydrophobic S-alkylaryl
groups that adopt a transoid orientation relative to
the central metal-coordinating rings, which affects the
way the hydrophobic moieties project from the core
structures. It is possible that each hydrophobic group
fits into a hydrophobic pocket on a target protein when
the groups are projected far enough away from one an-
other, as in the transoid Cu2Cl2(L1)2 and Zn(L1)2 com-
plexes. In contrast, the two S-benzyl groups in the
cisoid Ni(L1)2 complex are closer together, and so steric
hindrance may prevent a target protein from binding
either group.
1
L1 ligand. H NMR (400 MHz, CDCl3) d 9.97 (br s, 1H,
NH), 8.76 (dd, J = 1.6 Hz, 4.0 Hz, 1H, Py-H), 8.62 (d,
J = 5.2 Hz, 1H, Py-H), 8.18 (d, J = 8.8 Hz, 1H, Py-H),
7.90 (dt, J = 1.6 Hz, 8.0 Hz, 1H, Py-H), 7.75 (t, J = 7.6 Hz,
1H, Py-H), 7.59 (d, J = 8.4 Hz, 1H, Py-H), 7.26–7.44 (m,
7H, Ph-H and Py-H), 4.55 (s, 2H, CH2), 2.42 (d,
J = 9.5 Hz, 3H, CH3). 13C NMR (100 MHz CDCl3) d
200.05, 199.36, 153.80, 147.99, 137.83, 137.38, 135.74,
129.50 (2C), 129.46, 129.21, 128.67 (2C), 128.54, 127.61,
127.31, 124.47, 124.07, 121.42, 39.68, 38.92, 22.11, 11.43.
Zn(L1)2 complex. 1H NMR (400 MHz, CDCl3) d 7.90–7.92
(m, 1H, Py-H), 7.80 (dt, J = 1.6 Hz, 6.3 Hz, 1H, Py-H),
7.68–7.69 (d, J = 6.4 Hz, 1H, Py-H), 7.42–7.44 (m, 2H, Ph-
Acknowledgments
This work was supported by grants from the National
Institutes of Health (R01GM077622) and the American
Cancer Society (RSG-02-250-01-DDC) to G.F. We
thank the NCI for providing its Diversity Set collection
of compounds and an additional sample of NSC
295642, D.J. Wink for technical assistance and C.
H
and Py-H), 7.21–7.31 (m, 4H, Ph-H), 4.58 (d,
J = 10.7 Hz, 1H, CH2), 4.47 (d, J = 10.7 Hz, 1H, CH2),
2.72 (s, 3H, CH3). 13C NMR(100 MHz, CDCl3) d 191.50,
152.84, 149.52, 147.07, 138.70, 137.98, 129.17 (2C), 128.29
(2C), 126.77, 125.55, 122.30, 36.72, 14.34.
1
Ni(L1)2 complex. H NMR (400 MHz, CDCl3) d 8.66 (d,
Bruckner and S.C. Burdette for critical reading of the
¨
manuscript.
J = 5.6 Hz, 1H, Py-H) 7.88–7.92 (m, 2H, Py-H), 7.29–7.42
(m, 6H, Ph-H and Py-H), 4.36 (s, 2H, CH2), 2.30 (s, 3H, CH3).