Nucleosides Bearing Lipid Anchors
H, CH), 4.28 (s, 1 H, CH), 4.20 (m, 4 H, CH2), 3.91 (m, 2 H, CH2), layer was dried (MgSO4) and concentrated in vacuo to give a yellow
2.73 (m, 4 H, CH2), 2.69 (m, 2 H, CH2), 2.32 (t, J = 11.9 Hz, 8 H,
CH2), 2.00 (d, J = 8.9 Hz, 4 H, CH2), 1.58 (m, 2 H, CH2), 1.27 (m,
32H, –CH2–), 0.88 (t, J = 6.4 Hz, 3 H, CH3) ppm. 13C NMR
(75 MHz, CDCl3): δ = 173.37 (C=O), 171.98 (C=O), 171.70 (C=O),
171.57 (C=O), 163.57 (C-4), 150.92 (C-6), 141.61 (C-2), 129.95
oil. Purification by column chromatography (SiO2) eluting with cy-
clohexane/EtOAc (1:3 with 1% Et3N) gave 2Ј,3Ј-O-dipalmitoyl-5Ј-
O-(4,4Ј-dimethoxytrityl)uridine (1.66 g, 1.66 mmol, 82 %) as a
white solid. H NMR (300 MHz, CDCl3): δ = 9.02 (s, 1 H, NH),
7.76 (d, J = 6 Hz, 1 H, 6-H), 7.16–7.25 (m, 9 H, CHar), 6.82–6.88
1
(–CH=CH–), 129.65 –CH=CH–), 102.59 (C-5), 90.61 (CH), 83.47 (m, 4 H, CHar), 6.25 (d, J = 6 Hz, 1 H, 1Ј-H), 5.61 (d, J = 3.9 Hz,
(CH), 73.54 (CH), 72.90 (CH), 69.68 (CH), 61.72 (CH2), 33.94 1 H, 5-H), 5.41 (m, 2 H, CH),4.22 (s, 1 H, CH), 3.80 (s, 6 H,
(CH2), 31.84 (CH2), 29.70 (CH2), 29.65 (CH2), 29.46 (CH2), 29.26 OCH3), 3.50 (s, 2 H, CH2), 2.36 (m, 4 H, CH2), 2.04 (m, 8 H, CH2),
(CH2), 29.13 (CH2), 29.07 (CH2), 29.03 (CH2), 27.16 (CH2), 27.12 1.63 (t, J = 6.99 Hz, 4 H, CH2), 1.13 (s, 40 H, CH2), 0.90 (t, J =
(CH2), 24.76 (CH2), 22.62 (CH2), 14.07 (CH3) ppm.
6.42 Hz, 6 H, CH3) ppm. 13C NMR (75 MHz, CDCl3): δ = 172.9
(C=O), 164.2 (C-4), 159.5 (C-6), 150.4 (C-2), 143.8 (Cq), 139.9 (Cq),
134.9 (Cq), 130.2–127.0 (CHar), 125.3 (CHar), 113.7 (CHar), 113.1
(CHar), 102.9 (C-5), 87.6 (CH), 85.6 (CH), 82.2 (CH), 72.8 (CH),
71.0 (CH), 60.4 (CH2), 55.2 (OCH3), 33.9 (CH2), 31.9 (CH2), 29.7–
27.1 (CH2), 24.8 (CH2), 22.7 (CH2), 14.2 (–CH2–CH3) ppm.
1-{2Ј-O-[1,3-Bis(oleoyloxy)isopropylsuccinyl]-3Ј,5Ј-O-(di-tert-butyl-
silanediyl)-(β-D-arabinofuranos-1-yl)}uracil (12): DIAD (0.14 mL)
was added slowly to a solution of 6 (290 mg, 0.75 mmol), 9
(650 mg, 0.90 mmol), and PPh3 (230 mg, 0.90 mmol) in dry THF
(1.5 mL) until the red color had vanished. After 16 h at ambient
temperature the volatiles were evaporated and the residue was puri-
fied by column chromatography (cyclohexane/EtOAc, 1:1) to give
A solution of 5Ј-O-(4,4Ј-dimethoxytrityl)-protected 15 (1.66 g,
1.66 mmol) in 80% CF3COOH (15 mL) was stirred at ambient
12 (510 mg, 0.46 mmol, 61%). 1H NMR (300 MHz, CDCl3): δ = temperature for 15 h. The reaction was diluted with CH2Cl2
7.21 (d, J = 7.9 Hz, 1 H, 6-H), 6.45 (s, 1 H, 1Ј-H), 5.65 (d, J = (20 mL), carefully washed with saturated aq. NaHCO3, and dried
8.0 Hz, 1 H, 5-H), 5.60 (m. 1 H, CH), 5.27 (m, 4 H, –CH=CH–), with MgSO4. Silica gel flash chromatography with a short column
4.70 (m, 1 H, CH), 4.59 (m, 1 H, CH), 4.41 (m, 1 H, CH), 4.21 using cyclohexane/EtOAc (2:1) gave the product 15 as a white solid
(m, 2 H, CH2), 4.05 (m, 4 H, CH2), 2.59 (s, 2 H, CH2), 2.24 (t, J (310 mg, 0.43 mmol, 29%). 1H NMR (300 MHz, CDCl3): δ = 9.11
= 6 Hz, 4 H, CH2), 1.95 (m, 8 H, CH2), 1.52 (m, 4 H, CH2), 1.26 (s, 1 H, NH), 7.68 (d, J = 8 Hz, 1 H, 6-H), 5.99 (d, J = 5.7 Hz, 1
(s, 40 H, CH2), 1.00 (s, 18 H, C–CH3), 0.80 (t, J = 6.8 Hz, 3 H, H, 1Ј-H), 5.79 (d, J = 7.82 Hz, 1 H, 5-H), 5.41 (m, 2 H, CH), 4.12
CH2–CH3) ppm. 13C NMR (75 MHz, CDCl3): δ = 173.3 (C=O),
171.7 (C=O), 171.4 (C=O), 163.0 (C-4), 156.4 (C-6), 149.8 (C-2),
130.0 (–CH=CH–), 129.7 (–CH=CH–), 102.8 (C-5), 84.7 (CH),
(s, 1 H, CH), 3.85 (q, J = 1.9, 11.5 Hz, 2 H, CH2), 2.32 (m, 4 H,
CH2), 1.54 (t, J = 6.99 Hz, 4 H, CH2), 1.18 (s, 40 H, CH2), 0.80 (t,
J = 6.42 Hz, 6 H, CH3) ppm. 13C NMR (75 MHz, CDCl3): δ =
81.6 (CH), 70.0 (CH), 69.6 (CH), 67.2 (CH2), 65.8 (CH2), 64.2 172.9 (C=O), 172.5 (C=O), 163.2 (C-4), 150.4 (C-2), 103.2 (C-5),
(CH2), 61.8 (CH2), 60.4 (CH2), 51.8 (CH2), 33.9 (CH2), 31.8 (CH2), 87.7 (CH), 83.6 (CH), 72.9 (CH), 70.9 (CH), 61.8 (CH2), 34.0
29.7–26.6 (CH2), 25.8 (CH2), 22.7 (CH2), 21.9 (CH2), 21.8 (CH2), (CH2), 33.8 (CH2), 31.9 (CH2), 29.7–29.1 (CH2), 24.8 (CH2), 22.7
21.0 (CH2), 20.1 (CH2), 19.7 (C–CH3), 15.2 (C–CH3) 14.1 (CH2– (CH2), 14.2 (CH3) ppm.
CH3) ppm.
5Ј-O-(4,4Ј-Dimethoxytrityl)-2Ј,3Ј-O,O-disuccinyluridine (16): 5Ј-O-
1-{2Ј-O-[1,3-Bis(oleoyloxy)isopropyloxysuccinyl]-(β-
D
-arabino-
(4,4Ј-Dimethoxytrityl)uridine (1.10 g, 2.00 mmol), succinic anhy-
dride (0.60 g, 6.00 mmol), and DMAP (120 mg, 1.00 mmol) were
dissolved in anhydrous pyridine (10 mL). The reaction was stirred
for 3 days at ambient temperature. TLC analysis (EtOAc/MeOH,
9:1) showed the complete disappearance of the starting material.
Pyridine was removed in vacuo and the residue was then co-evapo-
rated with toluene (3ϫ50 mL). The dark-brown residue was taken
furanos-1-yl)}uracil (13): NH4F (1.00 g, 27 mmol) was added to a
solution of 12 (510 mg, 0.46 mmol) in MeOH (20 mL). The reac-
tion mixture was stirred overnight at ambient temperature, the vol-
atiles were evaporated, and the remainder was partitioned (CH2Cl2/
brine). The organic layer was dried (MgSO4), evaporated, and the
residue was purified by column chromatography (cyclohexane/
EtOAc, 1:1) to give 13 (330 mg, 0.35 mmol, 77 %). 1H NMR up in CH2CI2 (100 mL) and washed with saturated brine. The or-
(300 MHz, CDCl3): δ = 10.0 (s, 1 H, NH), 7.54 (d, J = 7.5 Hz, 1 ganic phase was dried with MgSO4 and concentrated in vacuo to
H, 6-H), 6.53 (s, 1 H, 1Ј-H), 5.76 (d, J = 3.0 Hz, 1 H, 5-H), 5.71
provide the crude product 14 as light-brown foam (1.56 g,
(d, J = 7.9 Hz, 1 H, CH), 5.27 (m, 4 H, –CH=CH–), 4.70 (m, 1 H, 2.00 mmol, quant. yield). 1H NMR (300 MHz, CDCl3): δ = 10.0
CH), 4.59 (m, 1 H, CH), 4.32 (m, 1 H, CH), 4.12 (m, 2 H, CH2), (s, 1 H, COOH), 8.6 (s, 1 H, NH), 7.6 (d, J = 8.1 Hz, 1 H, 6-H),
4.10 (m, 4 H, CH2), 2.25 (t, J = 7.2 Hz, 2 H, CH2), 1.92 (m, 8 H,
7.29–7.08 (m, 9 H, CHar), 6.76 (m, 4 H, CHar), 6.15 (d, J = 6.8 Hz,
CH2), 1.54 (m, 4 H, CH2), 1.19 (s, 40 H, CH2), 0.81 (t, J = 6.8 Hz, 1 H, 1Ј-H), 5.56 (m, 2 H, 5-H, CH), 5.41 (m, 1 H, CH), 4.18 (s, 1
3 H, CH3) ppm. 13C NMR (75 MHz, CDCl3): δ = 173.4 (C=O), H, CH), 3.72 (s, 6 H, OCH3), 3.40 (m, 2 H, CH2), 2.58 (s, 8 H,
171.8 (C=O), 171.6 (C=O), 163.7 (C-4), 151.0 (C-6), 140.1 (C-2),
130.0 (–CH=CH–), 129.7 (–CH=CH–), 102.6 (C-5), 90.7 (CH),
81.9 (CH), 74.7 (CH), 70.1 (CH), 69.9 (CH), 68.1 (CH2), 63.7
CH2) ppm. 13C NMR (75 MHz, CDCl3): δ = 171.4 (C=O), 171.3
(C=O), 163.7 (C-4), 158.8 (C-2), 143.9 (Cq), 140.0 (C-6), 139.7 (Cq),
139.4 (CHar), 134.9 (CHar), 134.7 (CHar), 130.2 (CHar), 130.0
(CH2), 61.8 (CH2), 33.9 (CH2), 31.8 (CH2), 29.7–29.1 (CH2), 27.2 (CHar), 129.1–127.1 (CHar), 125.3 (CHar), 113.4 (CHar), 113.2
(CH2), 24.8 (CH2), 22.7 (CH2), 21.9 (CH2), 14.1 (CH3) ppm.
(CHar), 103.1 (C-5), 87.6 (CH), 85.7 (CH), 82.1 (CH), 72.9 (CH),
71.7 (CH), 62.8 (CH2), 55.3 (OCH3), 29.1–28.3 (CH2) ppm.
2Ј,3Ј-O,O-Dipalmitoyl-5Ј-O-(4,4Ј-dimethoxytrityl)uridine and 2Ј,3Ј-
O,O-Dipalmitoyluridine (15): Palmitoyl chloride (1.65 g,
6.00 mmol) and DMAP (30 mg, 0.25 mmol) were added in one
batch to a solution of 5Ј-O-(4,4Ј-dimethoxytrityl)uridine (14)
(1.10 g, 2.00 mmol) in dry pyridine (25 mL) at 0 °C. The reaction
mixture was warmed to room temp. and the completion of the reac-
tion was monitored by TLC (cyclohexane/EtOAc, 1:3). After 2 h
the reaction mixture was concentrated in vacuo and partitioned
between diethyl ether (200 mL) and brine (100 mL). The organic
5Ј-O-(4,4Ј-Dimethoxytrityl)-2Ј,3Ј-O,O-bis(pentadecyloxysuccinyl)-
uridine and 2Ј,3Ј-O,O–Bis(pentadecyloxysuccinyl)uridine (17): The
disuccinate 16 (1.20 g, 1.60 mmol), pentadecanol (0.23 g,
0.80 mmol), DCC (0.19 g, 0.90 mmol), and DMAP (0.02 g,
0.20 mmol) were dissolved in anhydrous toluene (10 mL). The reac-
tion was stirred for 3 days under argon at ambient temperature.
The volatiles were evaporated and the residue was purified by col-
umn chromatography (CHCl3/MeOH, 9:1, with 1% Et3N) to give
Eur. J. Org. Chem. 2008, 1917–1928
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