Carbohydrate Based Antitumor Vaccines
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firms its identity. 1H NMR (600 MHz, CDCl3): d=7.79–7.73 (m, 2H),
7.64–7.57 (m, 2H), 7.41–7.30 (m, 9H), 5.86 (d, 1H, 3J=7.8 Hz), 5.59 (d,
1H, 3J=9.6 Hz), 5.29 (d, 1H, 3J=3.0 Hz), 5.22–5.15 (m, 2H), 5.02 (dd,
1H, 3J=2.4, 10.8 Hz), 4.75 (d, 1H, 3J=3.0 Hz), 4.59–4.57 (m, 1H), 4.54–
4.50 (m, 1H), 4.42 (d, 1H, J=7.2 Hz), 4.22 (t, 1H, J=7.2 Hz), 4.06–3.93
(m, 5H), 2.15 (s, 3H), 1.99 (s, 3H), 1.96 (s, 3H), 1.89 ppm (s, 3H).
67.8, 67.4, 61.3, 59.9, 53.9, 49.9, 41.7, 37.5, 35.3, 27.4, 25.6, 24.8, 22.1 ppm;
HRMS: m/z: calcd for C23H35N4NaO11: 567.2278; found: 567.2278
[M+Na]+.
Pentafluorophenyl 6-N-bromoacetamido hexanoate (14c): Compound
14b (0.5 g, 1.98 mmol)[73] was dissolved in CH2Cl2 (20 mL) along with N-
(3-dimethylaminopropyl)-N’-ethylcarbodiimide hydrochloride (0.43 g,
2.78 mmol, 1.4 equiv). Pentafluorophenol (0.51 g, 2.78 mmol, 1.4 equiv)
was then added and the reaction mixture was stirred at room tempera-
ture for five hours. Completion of the reaction was confirmed by TLC
analysis (CH2Cl2/methanol 90:10). The reaction was quenched by extrac-
tion with water and CH2Cl2. The organic layer was then dried over anhy-
drous sodium sulfate, concentrated to dryness and the residue was puri-
fied by flash column chromatography (hexanes/EtOAc 3:1!1:1). The de-
sired product was obtained in its pure form as a white solid (0.59 g,
71%). 1H NMR (600 MHz, CDCl3): d= (brs, 1H), 3.85 (s, 2H), 3.31–
3.28 (m, 2H), 2.66 (t, 2H, 3J=7.2 Hz), 1.81–1.76 (m, 2H), 1.62–1.57 (m,
2H), 1.47–1.42 ppm (m, 2H); 13C NMR (150 MHz, CDCl3): d=169.5,
165.6, 142.1, 140.4, 138.8, 137.2, 40.1, 33.3, 29.5, 29.1, 26.2, 24.4 ppm; ESI-
MS: m/z: calcd for C14H13BrF5NNaO3: 440.0; found: 440.1 [M+Na]+.
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N-(9-Fluorenylmethyloxycarbonyl)-O-(2-acetamido-3,4,6-tri-O-acetyl-2-
deoxy-a-d-galactopyranosyl)-l-serine (10): A mixture of compound 9
(1 g, 1.3 mmol) and palladium on activated carbon (1 g) in methanol was
stirred under a hydrogen atmosphere for 30 min. Completion of the reac-
tion was confirmed by TLC analysis (CH2Cl2/methanol 95:5). The reac-
tion mixture was then filtered through Celite and concentrated under
vacuum. Compound 10 was obtained in its pure form with 90–95% yield
and was used without further purification. 1H NMR (600 MHz, CDCl3):
d=7.79–7.72 (m, 2H), 7.54–7.49 (m, 2H), 7.37–7.30 (m, 4H), 5.40 (brs,
1H), 5.23 (d, 1H, 3J=11.4 Hz), 4.93 (d, 1H, 3J=3.0 Hz), 4.56 (dd, 1H,
3J=3.0, 11.4 Hz), 4.28 (t, 1H, 3J=6.0 Hz), 4.18–4.09 (m, 3H), 3.95–3.87
3
(m, 2H), 3.75 (t, 1H, J=9.0 Hz), 2.18 (s, 3H), 2.07 (s, 3H), 2.01 (s, 3H),
1.99 ppm (s, 3H).
N-(9-Fluorenylmethyloxycarbonyl)-O-(2-acetamido-3,4,6-tri-O-acetyl-2-
deoxy-a-d-galactopyranosyl)-l-serine ethanolamide (11): Compound 10
(0.75 g, 1.1 mmol), BOP (973 mg, 2.2 mmol, 2 equiv) and diisopropyl-
ethylamine (0.38 mL, 2.2 mmol, 2 equiv) were dissolved in THF/CH2Cl2
1:1 (50 mL). The mixture was stirred at room temperature for 1 h and
then ethanolamine (0.33 mL, 5.5 mmol, 5 equiv) was added. The reaction
mixture was stirred at room temperature for two hours or until comple-
tion of the reaction was confirmed by TLC analysis (CH2Cl2/methanol
90:10). The reaction mixture was diluted with CH2Cl2 and extracted with
a saturated solution of ammonium chloride. The organic layer was dried
over anhydrous sodium sulfate, concentrated to dryness and the residue
was purified via flash column chromatography (CH2Cl2/methanol 90:10).
The desired product was obtained in its pure form as a white solid with
60–80% yield. 1H NMR (600 MHz, CDCl3): d=7.79–7.78 (m, 2H), 7.67–
7.65 (m, 2H), 7.42–7.40 (m, 2H), 7.35–7.32 (m, 2H), 6.37 (d, 1H, 3J=
3.0 Hz), 5.93 (d, 1H, 3J=7.2 Hz), 5.10–5.02 (m, 1H), 4.60–4.41 (m, 3H),
4.25–4.17 (m, 2H), 4.13–4.06 (m, 2H), 3.94–3.78 (m, 2H), 3.67–3.65 (m,
2H), 3.47–3.43 (m, 2H), 2.19 (s, 3H), 2.07 (s, 3H), 2.00 (s, 3H), 1.96 ppm
(s, 3H); 13C NMR (150 MHz, CDCl3): d=171.8, 170.9, 170.6, 143.8, 141.5,
128.1, 127.3, 125.1, 120.3, 98.9, 69.4, 68.5, 67.3, 67.2, 61.9, 61.3, 47.7, 47.3,
6-N-Bromoacetamido-hexanoyl-O-(2-acetamido-2-deoxy-a-d-galactopyr-
anosyl)-l-serine ethanolamide (2): Compound 4 (30 mg, 0.085 mmol) and
compound 14c (39 mg, 0.094 mmol, 1.1 equiv) were dissolved in N-meth-
ylpyrrolidinone (5 mL). The reaction mixture was stirred at ꢀ208C for
45 min. Completion of the reaction was confirmed by mass spectroscopy.
The reaction was quenched by addition of diethyl ether to the mixture in
order to precipitate the product. The solid residue was obtained by filtra-
tion. It was then redissolved in water and lyophilized. The desired prod-
uct was obtained as a white solid (30 mg, 59%). [a]2D5 = +254.8 (c = 2.1,
H2O); 1H NMR (600 MHz, D2O): d=4.70 (d, 1H, 3J=3.6 Hz), 4.38 (d,
1H, J=3.6 Hz), 3.95 (dd, 1H, J=3.6, 10.8 Hz), 3.77 (d, 1H, J=2.4 Hz),
3.73–3.69 (m, 1H), 3.61–3.58 (m, 1H), 3.55 (t, 1H, 3J=7.2 Hz), 3.46–3.43
(m, 2H), 3.05–3.00 (m, 2H), 2.14 (t, 2H, 3J=7.2 Hz), 1.84 (s, 3H), 1.45–
1.33 (m, 4H), 1.16–1.13 ppm (m, 2H);13C NMR (150 MHz, D2O): d=
177.2, 174.5, 171.7, 169.9, 97.9, 71.4, 68.5, 67.7, 67.3, 61.2, 59.9, 53.8, 49.8,
41.7, 39.7, 35.3, 28.2, 27.8, 25.5, 24.9, 22.1 ppm; HRMS: m/z: calcd for
C21H35BrN3NaO11: 607.1585; found: 607.1585 [M+Na]+.
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6-N-Biotinamido-hexanoyl-O-(2-acetamido-2-deoxy-a-d-galactopyrano-
syl)-l-serine ethanolamide (3): Compound 4 (30 mg, 0.085 mmol) and
compound 16 (42 mg, 0.094 mmol, 1.1 equiv) were dissolve in N-methyl-
pyrrolidinone (5 mL). The reaction mixture was stirred at room tempera-
ture for 30 minutes. Completion of the reaction was confirmed by mass
spectroscopy. The reaction was quenched by addition of diethyl ether to
the mixture in order to precipitate the product. The solid residue was ob-
tained by filtration. It was then redissolved in water and lyophilized. The
41.9 ppm; ESI: m/z: calcd for C34H39N2NaO14
[M+Na]+.
:
722.2; found: 722.3
O-(2-Acetamido-2-deoxy-a-d-galactopyranosyl)-l-serine
ethanolamide
(4): Compound 11 (0.5 g, 0.71 mmol) was dissolved in a solution of am-
monia in methanol (20 mL) and the reaction was stirred at 08C for 6 h.
Completion of the reaction was confirmed by TLC analysis (CH2Cl2/
methanol 80:20). The reaction mixture was concentrated to dryness and
the residue was purified via short flash column chromatography (CH2Cl2/
methanol 80:20!20:80). The desired product was obtained in its pure
desired product was obtained as a white solid (42 mg, 72%). [a]D25
=
+26.2 (c = 1.3, H2O); 1H NMR (600 MHz, D2O): d=4.68 (d, 1H, 3J=
3.6 Hz), 4.40–4.36 (m, 2H), 4.21 (dd, 1H, 3J=4.2, 7.8 Hz), 3.93 (dd, 1H,
3J=4.2, 11.4 Hz), 3.76 (d, 1H, 3J=3 Hz), 3.71–3.65 (m, 2H), 3.59–3.51
(m, 3H), 3.44–3.41 (m, 2H), 3.16–3.10 (m, 4H), 2.98–2.95 (m, 2H), 2.7
(dd, 1H, 3J=4.8, 13.2 Hz), 2.56 (d, 1H, 3J=12.6 Hz), 2.13 (t, 2H, 3J=
7.8 Hz), 2.01 (t, 2H, 3J=7.2 Hz), 1.83 (s, 3H), 1.51–1.28 (m, 8H), 1.21–
1.11 ppm (m, 4H); 13C NMR (150 MHz, D2O): d=177.2, 176.7, 174.5,
171.7, 97.9, 71.4, 68.5, 67.7, 67.4, 62.2, 61.3, 60.4, 59.9, 55.5, 53.8, 49.9,
41.7, 39.8, 39.2, 35.6, 35.4, 28.2, 27.9, 27.8, 25.7, 25.3, 24.9, 22.1 ppm;
HRMS: m/z: calcd for C28H47N6NaO11S: 713.3156; found: 713.3158
[M+Na]+.
form as
a
white solid (0.22–0.24 g, 90–95%). 1H NMR (600 MHz,
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CDCl3): d=4.76 (d, 1H, J=3.0 Hz), 4.26 (dd, 1H, J=3.0, 10.8 Hz), 3.86
(brs, 1H), 3.81 (m, 2H), 3.76–3.67 (m, 3H), 3.59 (t, 1H, 3J=5.4 Hz),
3.53–3.49 (m, 2H), 3.33–3.28 (m, 4H), 1.98 ppm (s, 3H); ESI: m/z: calcd
for C13H23N2NaO9: 374.2; found: 374.2 [M+Na]+.
N-6-Maleimido hexanoyl-O-(2-acetamido-2-deoxy-a-d-galactopyranosyl)-
l-serine ethanolamide (1): Compound 4 (30 mg, 0.085 mmol) and com-
pound 12 (29 mg, 0.094 mmol, 1.1 equiv) were dissolved in N-methylpyr-
rolidinone (5 mL). The reaction mixture was stirred at ꢀ208C for 40 min.
Completion of the reaction was confirmed by mass spectroscopy. The re-
action was quenched by addition of diethyl ether to the mixture in order
to precipitate the product. The solid residue was obtained by filtration. It
was then redissolved in water and lyophilized. The desired product was
obtained as a white solid (23 mg, 50%). [a]2D5 = +238 (c = 2.5, H2O);
1H NMR (600 MHz, D2O): d = 6.65 (s, 2H), 4.72 (d, 1H, 3J=3.6 Hz),
Synthesis ofTn-S-CPMV : The cysteine mutant of CPMV (S-CPMV) was
generated by modifying the viral RNA to mutate T2102 and T228 into
cysteines as reported.[75] S-CPMV was incubated at 1 mgmLꢀ1 with 50
molar equivalents of maleimide-Tn or 200 molar equivalents of bromo-
acetamide-Tn overnight at 48C in buffer with 20% DMSO. The reaction
was purified by ultracentrifugation over a sucrose gradient (0–40%) at
27000 rpm for 2 h at 48C using a Beckman SW28 rotor. The band corre-
sponding to intact CPMV was collected and pelleted by ultracentrifuge
at 42000 rpm using Beckman 50.2Ti rotor for 2.5 h. The pellet was resus-
pended in buffer. The conjugate was analyzed by UV-visible spectrosco-
py, TEM and FPLC.
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4.39 (t, 1H, J=5.4 Hz), 3.98 (dd, 1H, J=3.6, 10.8 Hz), 3.79 (d, 1H, J=
2.4 Hz), 3.74–3.69 (m, 3H), 3.47–4.45 (m, 2H), 3.31 (t, 2H, 3J=7.2 Hz),
3.19–3.17 (m, 2H), 3.16 (s, 1H), 2.53 (s, 1H), 2.14 (t, 2H, 3J=7.2 Hz),
1.86 (s, 3H), 1.44–1.38 (m, 4H), 1.12–1.09 ppm (m, 2H); 13C NMR
(150 MHz, D2O): d=177.2, 174.6, 173.5, 171.7, 134.4, 97.9, 71.4, 68.5,
Chem. Eur. J. 2008, 14, 4939 – 4947
ꢀ 2008 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim
4945