Nara et al.
1
2-bromo-5-iodopyrimidine, 85% from 2-chloro-5-iodopyrimidine,
89% from 2-ethoxy-5-iodopyrimidine, 85% from 2-methoxy-5-
bromopyrimidine, 79% from 2-chloro-5-bromopyrimidine.
2-Benzyloxy-5-iodopyrimidine (25). 1H NMR (400 MHz,
CDCl3): δ 5.43 (s, 2H), 7.33-7.41 (m, 3H), 7.47-7.49 (d, J ) 7.2
Hz, 2H), 8.67 (s, 2H) ppm. 13C NMR (100 MHz, CDCl3): δ 69.5,
82.6, 128.0, 128.2, 128.5, 136.0, 164.0, 164.4 ppm. HRMS (ES+)
calcd (M) 311.9760, obsd 311.9747. Yield: 97% at 60 °C from
2-chloro-5-iodopyrimidine, 98% at 60 °C from 2-bromo-5-iodopy-
rimidine.
5-N-Benzylamino-2-N,N-dimethylaminopyrimidine (35). H
NMR (300 MHz, CDCl3): δ 3.11 (s, 6H) 3.52 (bs, 1H), 4.23 (s,
2H), 7.25-7.35 (m, 5H), 7.93 (s, 2H) ppm. 13C NMR (100 MHz,
CDCl3): δ 38.2, 50.3, 128.1, 128.2, 129.4, 133.5, 139.6, 145.4, 158.7
ppm. HRMS (ES+) calcd (M) 228.1375, obsd 228.1373. Yield:
82%.
General Procedure for Hydrogenolysis of 5-Benzyl-
aminopyri(mi)dines. A mixture of 5-benzylaminopyri(mi)dine (1.0
mmol), ammonium formate (5.0 mmol, 216 mg), and Pd-carbon
(10 mol%) in methanol (10 mL) was refluxed for 30 min. The
reaction mixture was filtered over Celite and washed with methanol
(10 mL). The filtrate was concentrated and residue was resuspended
in diethyl ether (50 mL). The insoluble particles were filtered off,
and the filtrate was concentrated. The residue was subjected to flash
chromatography (eluent: ethyl acetate/hexanes). The purified prod-
uct was characterized by 1H NMR, 13C NMR, and mass spectrom-
etry. Although the conversion was quantitative in all the cases, the
purification and isolation of the polar derivatives led to slightly
reduced yields.
2,5-Dibenzyloxypyridine (26). 1H NMR (400 MHz, CDCl3): δ
4.96 (s, 2H), 5.24 (s, 2H), 6.65-6.68 (d, J ) 8.8, 1H) 7.16-7.37
(m, 11H), 7.79-7.80 (d, J ) 2.8, 1H) ppm. 13C NMR (100 MHz,
CDCl3): δ 67.8, 71.3, 111.5, 127.6, 127.8, 127.86, 127.9, 128.2,
128.5, 128.7, 132.4, 136.7, 137.6, 150.4, 158.4 ppm. HRMS (ES+)
calcd (M) 291.1259, obsd 291.1259. Yield: 88%.
2-Benzyloxy-5-iodopyridine (27). 1H NMR (400 MHz, CDCl3):
δ 5.40 (s, 2H), 6.66-6.68 (d, J ) 8.4 Hz, 1H), 7.32-7.46 (m,
5H), 7.80-7.83 (dd, J ) 8.8, 2.4 Hz, 1H), 8.36-8.37 (d, J ) 2.0
Hz, 1H) ppm. 13C NMR (100 MHz, CDCl3): δ 67.9, 82.3, 113.7,
128.0, 128.0, 128.5, 136.9, 146.5, 152.6, 163.0 ppm. HRMS (ES+)
calcd (M) 310.9807, obsd 310.9806. Yield: 10%.
5-Amino-2-N,N-dimethylaminopyridine (36). The characteriza-
tion data was consistent with the literature.31 Yield: 80%.
5-amino-2-N,N-dimethylaminopyrimidine (37). 1H NMR (400
2-Benzyloxy-5-bromopyridine (28). 1H NMR (400 MHz,
CDCl3): δ 5.37 (s, 2H), 6.74-6.76 (d, J ) 9.2 Hz, 1H) 7.33-7.48
(m, 5H), 7.66-7.69 (dd, J ) 8.8, 2.4 Hz, 1H) 8.24 (d, J ) 2.4 Hz,
1H) ppm. 13C NMR (100 MHz, CDCl3): δ 68.0, 111.9, 113.0, 128.0,
128.0, 128.5, 136.9, 141.2, 147.4, 162.4 ppm. MS (m/z, % intensity)
91 (100), 262 (9), 264 (8). Yield: 55%
MHz, CDCl3): δ 3.02 (bs, 2H), 3.13 (s, 6H), 8.00 (s, 2H) ppm. 13
C
NMR (100 MHz, CDCl3): δ 37.6, 129.9, 146.6, 158.3 ppm. HRMS:
calcd (M) 138.0905, obsd 138.0905. Yield: 81%
General Procedure for Hydrogenolysis of 5-Benzyloxy-
pyri(mi)dines. A solution of 2-substituted and unsubstituted
5-benzyloxypyri(mi)dine (0.175 mmol) in 5 mL of MeOH was
treated with 10% Pd on C (0.01 g), and the resulting black
suspension was stirred at rt under H2 atmosphere (1 atm) overnight.
The catalyst was removed by filtration through a pad of Celite,
and the filtrate was concentrated under reduced pressure. The
residue was subjected to flash chromatography (eluent: ethyl acetate/
2-N-(2,5-Dimethylpyrrolo)-5-benzyloxypyridine (29). 1H NMR
(400 MHz, CDCl3): δ 2.11 (s, 6H), 5.18 (s, 2H), 5.90 (s, 2H),
7.16-7.18 (d, J ) 8.4 Hz, 1H), 7.40-7.50 (m, 6H), 8.37-8.38 (d,
J ) 2.8 Hz, 1H) ppm. 13C NMR (100 MHz, CDCl3): δ 13.0, 70.8,
106.4, 122.5, 123.5, 127.7, 128.5, 128.7, 128.8, 135.9, 137.1, 145.2,
154.0 ppm. HRMS (ES+) calcd (M) 278.1419, obsd 278.1414.
Yield: 86%.
hexanes). The purified product was characterized by 1H NMR, 13
NMR, and mass spectrometry. Although the conversion was
quantitative in all the cases, the purification and isolation of the
polar derivatives led to slightly reduced yields.
C
2-N-(2,5-Dimethylpyrrolo)-5-benzyloxypyrimidine (30). 1H
NMR (400 MHz, CDCl3): δ 2.37 (s, 6H), 5.21 (s, 2H), 5.98 (s,
2H), 7.46-7.52 (m, 5H), 8.56 (s, 2H) ppm. 13C NMR (100 MHz,
CDCl3): δ 14.1, 71.2, 107.8, 127.7, 128.8, 128.9, 129.4, 135.3,
145.0, 150.6, 151.8 ppm. HRMS (ES+) calcd (M) 279.1372, obsd
279.1369. Yield: 82%.
1
6-N,N-Dimethylamino-3-pyridinol (38). H NMR (400 MHz,
CDCl3): δ 3.04 (s, 6H) 6.50-6.52 (d, J ) 9.2 Hz, 1H) 7.18-7.21
(dd, J ) 8.8, 2.8 Hz, 1H) 7.81 (d, J ) 2.8 Hz, 1H), 8.45 (bs, 1H)
ppm. 13C NMR (100 MHz, CDCl3): δ 39.3, 108.1, 128.5, 132.6,
145.1, 153.7 ppm. HRMS (ES+) calcd (M) 138.0793, obsd
138.0790. Yield: 89%.
5-Benzyloxy-4,6-dimethyl-2-N,N-dimethylaminopyridine
1
(31). H NMR (400 MHz, CDCl3): δ 2.26 (s, 3H), 2.45 (s, 3H),
3.07 (s, 6H), 4.77 (s, 2H), 6.22 (s, 1H), 7.37-7.50 (m, 5H) ppm.
13C NMR (100 MHz, CDCl3): δ 16.6, 19.5, 38.4, 74.9, 105.2, 128.0,
128.03, 128.6, 137.6, 141.3, 143.8, 149.2, 155.8 ppm. HRMS (ES+)
calcd (M) 256.1576, obsd 256.1576. Yield: 81%.
2-N,N-Dimethylamino-5-pyrimidinol (39). 1H NMR (400 MHz,
DMSO-d6): δ 3.03 (s, 6H) 8.00 (s, 2H), 9.03 (s, 1H) ppm. 13C NMR
(100 MHz, DMSO-d6): δ 37.2, 142.9, 145.2, 157.4 ppm. HRMS
(ES+) calcd (M) 139.0746, obsd 139.0739. Yield: 93%.
5-Benzyloxy-4,6-dimethyl-2-N,N-dimethylaminopyrimidine
General Procedure for Benzylthiolation of Pyri(mi)dyl
Halides. To the mixture of CuI (0.40 mmol), 1,10-phenanthroline
(0.80 mmol), cesium carbonate (6.00 mmol), and 2-N,N-dimethy-
lamino-5-iodopyri(mi)dine (4.00 mmol) in a dry Schlenk flask
(evacuated and nitrogen purged) were added 5 mL of toluene and
benzyl mercaptan (40 mmol) and the mixture heated in an oil bath
at 110 °C for 24 h. After the completion of reaction, as judged by
TLC, the reaction was quenched by filtering the reaction mixture
through silica plug and the filtrate concentrated in vacuo. The crude
residue obtained was subjected to flash chromatography (eluent:
ethyl acetate/hexanes). The purified product was characterized by
1H NMR, 13C NMR, and mass spectrometry.
1
(32). H NMR (400 MHz, CDCl3): δ 2.35 (s, 6H), 3.18 (s, 6H),
4.75 (s, 2H), 7.37-7.47 (m, 5H) ppm. 13C NMR (100 MHz,
CDCl3): δ 19.3, 37.3, 75.4, 128.1, 128.3, 128.6, 137.1, 141.6, 158.5,
160.1 ppm. HRMS (ES+) calcd (M) 257.1528, obsd 257.1524.
Yield: 78%.
General Procedure for Benzylamination of Pyri(mi)dyl
Halides. A mixture of 5-bromo-2-N,N-dimethylaminopyri(mi)dine
(1.49 mmol, 0.30 g), copper iodide (0.15 mmol, 0.029 g, 10 mol%),
K3PO4 (3.0 mmol, 0.63 g), and L-proline (0.17 mmol, 0.02 g) in
DMSO was stirred at 80 °C for 48 h under nitrogen. The reaction
mixture was diluted with 20 mL of ethyl acetate and filtered through
Celite. The filtrate was concentrated under reduced pressure, and
the residue obtained was purified using flash column chromatog-
raphy (solvent: ethyl acetate) to give the title compound.
5-N-Benzyamino-2-N,N-dimethylaminopyridine (34). 1H NMR
(300 MHz, CDCl3): δ 3.00 (s, 6H) 4.28 (s, 2H), 6.47-6.51 (d, J )
8.9 Hz, 1H), 6.94-6.98 (dd, J ) 8.9, 3.0 Hz, 1H) 7.30-7.40 (m,
5H), 7.76-7.77 (d, J ) 2.5 Hz, 1H) ppm. 13C NMR (100 MHz,
CDCl3): δ 39.6, 50.3, 107.6, 125.5, 127.9, 128.2, 129.3, 134.2,
136.3, 140.2, 154.9 ppm. HRMS (ES+) calcd (M) 227.1422, obsd
227.1419. Yield: 80%.
5-S-Benzylthio-2-N,N-dimethylaminopyridine (40). 1H NMR
(400 MHz, CDCl3): δ 3.23 (s, 6H), 4.00 (s, 2H), 6.51-6.53 (d, J
) 8.8 Hz, 1H), 7.26-7.28 (d, J ) 6.4 Hz, 2H), 7.33-7.38 (m,
3H), 7.42-7.45 (dd, J ) 8.8, 2.4 Hz, 1H) 8.26 (d, J ) 2.0 Hz, 1H)
ppm. 13C NMR (100 MHz, CDCl3): δ 38.1, 42.3, 105.7, 116.1,
127.0, 128.4, 129.0, 138.3, 143.2, 153.3, 158.7 ppm. HRMS (ES+)
calcd (M) 244.1034, obsd 244.1040. Yield: 87%.
(31) Seydel, J. J. Med. Chem. 1971, 14, 724–729.
9332 J. Org. Chem. Vol. 73, No. 23, 2008