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J. U. Song et al. / Bioorg. Med. Chem. Lett. xxx (2016) xxx–xxx
OH
N
HO
N
N
N
CN
O
N
S
N
O
N
N
N
H
N
H
CN
Febuxostat
(IC50= 3.1-5.5 nM)
FYX-051
(IC50= 5.3 nM)
Allopurinol
(IC50= 3.74 ¥ì )
M
CN
O
N
R1
NO2
R1
H
H
H3C
R2
N
S
H3C
H3C
HO
HN
N
S
N
N
S
N
N
R3
R3
HO
O
HO
N
R3
O
H
R2
O
O
Compound 10
(IC50= 3.0-12.3 nM)
Compound 9m
(IC50= 5.1 nM)
Pyrimidone
(IC50= 4.8-7.6 nM)
Compound 9
(IC50= 3.5-2200 nM)
Figure 1. Structures of allopurinol, febuxostat, FYX-051, pyrimidone, compound 9 and compound 9m as xanthine oxidase inhibitors.
study, 2-(indol-5-yl)thiazole derivatives, compound 10 were
investigated as XO inhibitor, which differ in structure from
2-(indol-2-yl)thiazole derivatives.21 The structural difference
enables 2-(indol-2-yl)thiazole derivatives to have additional
hydrogen bond interactions with the binding site residues. The
indole NH of 2-(indol-2-yl)thiazole derivatives interacts with
Glu802 of active site via hydrogen bond interaction, whereas that
of 2-(indol-5-yl)thiazole derivatives substituted by various
moieties heads toward the solvent. Thus, 2-(indol-2-yl)thiazole
derivatives benefit from the interaction energy in the binding site.
Furthermore, the interaction between cyanide (9j) and Asn768 did
not deteriorate through the positional changes of indole scaffold,
which again tells us its superiority (Fig. 2).
The general synthetic route to 9 is shown in Scheme 1. 1 was
reacted with concd HCl/NaNO2 and concd HCl/SnCl at room tem-
perature to furnish compound 2 in 45–50% yield. 2 and methyl
pyruvate were reacted with sodium acetate in methanol to afford
3 in 70–78% yield, and 3 were reacted with polyphosphoric acid
at 70 °C to provide 4 in 60–67% yield. Ester 4 was hydrolyzed with
sodium hydroxide in aqueous THF and methanol to obtain 5 in 90%
yield. Amide 6 was synthesized from acid 5 using HBTU [2-(1H-
benzotriazole-1-yl)-1,1,3,3-tetramethyluronium hexafluorophosphate]
and ammonium chloride in 74–90% yield. Amide 6 was converted
to thioamide 7 by refluxing with Lawesson’s agent in THF in
87–95% yield. Thioamide 7 and ethyl 2-chloroacetoacetate were
reacted with a catalytic amount of pyridine by refluxing in ethanol
to afford indole-2-thiazole 8 in a reasonable yield of 80–85%. Ester
8 was hydrolyzed with sodium hydroxide in aqueous THF and
methanol, and the final compound 9 was obtained in a good yield.
In order to understand the binding conformation of the hit com-
pound 9a as a XO inhibitor, flexible molecular docking was carried
out into the active site of bovine milk XO.26,27 The compounds were
docked into the substrate binding pocket using CDOCKER module
in DiscoveryStudio4.1 (Accelrys Software Inc., US).27 Figure 3
shows the docking conformations of the hit compound at the bind-
ing site of XO. Docking score of compound 9a (À32.64 kcal/mol)
was less than score of febuxostat (À38.14 kcal/mol). Both com-
pounds shows important interactions between carboxylic acid
moiety and the residues known to be important for binding of
endogeneous substrate of XO, Arg880, and Thr1010. We can see
almost identical conformation of the carboxylic acid and thiazole
moiety of the hit to those of febuxostat. However, the conforma-
tion of indole moiety and its side chain is quite different from that
of febuxostat. As shown in Figure 3, cyano group of febuxostat
interacts with Asn768 and Lys771 via hydrogen bond interactions,
whereas the hit compound does not have such moiety. The lack of
interactions is attributed to the lower activity of the hit compound
at the XO binding pocket compared to febuxostat.
The established synthesis led us to evaluate in vitro xanthine
oxidase inhibition of 9. Assay of in vitro XO inhibition activity
was performed by measuring the inhibitor concentration needed
for 50% inhibition.22 Tables 1 and 2 represents the inhibitory activ-
ities against XO of the test compounds.
The proposed docking model provides us with a reasonable
explanation of modification in compounds. In Table 1, substituents
of chloro, bromo, nitro and cyano groups at R1-position led to more
than 10-fold gain in potency.25 First of all, in order to examine the
effect of the substitution at R2 and R3 positions of the indole ring,
analogs 9a–f were prepared to investigate their XO inhibitory
activities. 9a with hydrogen for R1 and methoxy group for R2
exhibited low IC50 value of 2200 nM, and 9b with methoxy group
for R3 slightly increased activity (IC50 = 792.0 nM). 9c (R2 = isobu-
toxy) exhibited IC50 value of 481.0 nM, and 9d (R3 = isobutoxy)
increased activity (IC50 = 209.0 nM). 9f (R3 = benzyloxy) with bulky
group exhibited IC50 value of 522.0 nM, and 9e (R3 = phenoxy)
increased activity (IC50 = 233.0 nM). Substitution for R3-position
rather than R2-position much increased in vitro activities. That
can be explained by hydrophobic space of proteins at R3-position.
Therefore, R3-position was fixed as phenoxy group for comparison.
In order to examine the effect of the substitution of hydrogen at
R1-position, analogs 9g–9j were prepared and their XO inhibitory
activities were investigated. Based on the docking model, chloro,
Figure 2. Binding of 9j (green) and the compound 10 shown in our previous Letter
(gray)21 at bovine milk XOR. The hydrogen bond distance between NH of indole and
Glu802 is shown as green color, and interacting residues are shown as stick form.