Article
Journal of Medicinal Chemistry, 2010, Vol. 53, No. 3 1379
(320 nm), Anal. Calcd for
99.6 M-1 cm-1
C33H55N7O11 2H2O: C, 52.02% H; 7.81%; N, 12.87%. Found:
an off-white solid (0.45 g, 61%). Solubility in ethanol (25 °C):
15.2 mg mL-1 (∼20 mM). Solubility in water (25 °C): 5 mg mL-1
ε
=
.
3
1
(∼6.5 mM). H NMR (300 MHz, DMSO-d6) δH: 9.6 (2H, m,
C, 49.69% H; 6.42%; N, 11.93%.
NH), 7.7 (3H, s, OH), 7.3 (1H, s, NH), 3.4 (6H, t, J = 9 Hz,
CH2), 3.2 (1H, s, OH), 3.0 (4H, q, J = 6 Hz, CH2), 2.6 (4H, t, J =
6 Hz, CH2), 2.3 (4H, t, J = 6 Hz, CH2), 1.9 (3H, s, CH3), 1.7 (2H,
s, CH), 1.5-1.6 (12H, m, CH2), 1.2-1.5 (18H, m, CH2). 13C
NMR (300 MHz, DMSO-d6) δC: 176.3, 171.7, 67.0, 56.4, 47.2,
44.7, 38.2, 31.0, 30.3, 29.2, 27.9, 26.4, 23.9, 23.8, 20.7. MS: m/z
DFOB-LDX (10). The residue was triturated with diethylether
(5 ꢀ 5 mL), recrystallized from methanol, and purified by RP-
HPLC (95:5 (A:B) to 45:55 (A:B) over 30 min) to give 10 as an
off-white solid (0.14 g, 65%). 1H NMR (200 MHz, CD3OD) δH:
8.2 (2H, d, J = 6.9 Hz, CH), 7.9 (2H, d, J = 6.5 Hz, CH), 7.6
(2H, d, J = 6.8 Hz, CH), 7.4 (2H, m, CH), 6.9-7.0 (4H, m, CH),
3.6 (6H, t, J = 6.8 Hz, CH2), 3.2 (4H, m, CH2), 2.8 (4H, m, CH2),
2.4 (4H, m, CH2), 2.1 (3H, s, CH3), 1.6-1.7 (8H, m, CH2), 1.5
(4H, m, CH2), 1.3 (6H, m, CH2), (OH not observed). 13C NMR
(200 MHz, CD3OD) δC: 19.2, 23.7, 23.9, 26.3, 27.9, 29.0, 30.5,
39.2, 39.9, 44.7, 116.3, 119.6, 119.8, 123.8, 127.2, 128.3, 130.9,
131.4, 133.5, 141.5, 157.2, 160.1, 173.2, 173.5. MS: m/z ESI
(positive ion). Found [M þ Hþ]þ 916.5 (85), [M þ Naþ]þ 938.7
(100), [C46H61N9O11Na]þ requires 939.03. MeOH (320 nm), ε =
3.127 ꢀ 103 M-1 cm-1. Anal. Calcd for C46H61N9O11: C,
60.31% H; 6.91%; N, 13.76%. Found: C, 59.40% H; 5.63%;
N, 13.38%.
Extinction Coefficients and Job’s Plot Analysis. A plot of
absorbance/path length (cm-1) at 320 nm vs concentration (M)
in methanol of 4-10 was measured using a SpectraMax
M5/M5e UV-vis (Molecular Devices, Sunnyvale, CA) and the
slope of the line determined as ε (M-1 cm-1). Job’s Plots
analyses were carried out for 4-10, as detailed in the literature,85
with compounds (0.1 mM) dissolved in a solution of 20% (v/v)
ESI (positive ion). Found [M
þ
Hþ]þ 737.20 (100),
[C36H63N6O10]þ requires 739.92. MeOH (320 nm), ε = 49.74
M-1 cm-1. Anal. Calcd for C36H62N6O10: C, 58.51% H; 8.46%;
N, 11.38%. Found: C, 56.88% H; 8.21%; N, 10.92%.
DFOB-AdAdMe (6). The residue was triturated with diethyl-
ether (5 ꢀ 5 mL), recrystallized from methanol, and purified by
RP-HPLC (90:10 (A:B) to 40:60 (A:B) over 30 min) to give 6 as
an off-white solid (0.57 g, 80%). Solubility in ethanol (25 °C): 15
mg mL-1 (∼20 mM). 1H NMR (300 MHz, DMSO-d6) δH: 9.6
(2H, m, NH), 7.7 (3H, s, OH), 7.3 (1H, s, NH), 3.4 (6H, t, J = 15
Hz, CH2), 3.0 (4H, q, J = 6 Hz, CH2), 2.6 (4H, t, J = 9 Hz,
CH2), 2.3 (4H, t, J = 6 Hz, CH2), 1.9 (3H, s, CH3), 1.6-1.1
(31H, m, CH2, CH), 0.8 (6H, s, CH3). 13C NMR (300 MHz, d6-
DMSO) δC: 176.8, 172.3, 171.7, 50.7, 45.4, 42.8, 37.8, 31.1, 28.2,
27.9, 26.4, 23.9, 23.8, 20.7. MS: m/z ESI (positive ion). Found
[M þ Hþ]þ 751.13 (100), [C38H67N6O9]þ requires 751.98.
MeOH (320 nm), ε = 32.17 M-1 cm-1. Anal. Calcd for C38H66-
N6O9: C, 60.77% H; 8.86%; N, 11.19%. Found: C, 58.85% H;
8.04%; N, 10.71%.
DFOB-AdAc (7). The residue was triturated with diethylether
(5 ꢀ 5 mL), recrystallized from methanol, and purified by RP-
HPLC (90:10 (A:B) to 25:75 (A:B) over 30 min) to give 7 as an
off-white solid (0.55 g, 80%). Solubility in ethanol (25 °C): 15 mg
mL-1 (∼20 mM). 1H NMR (300 MHz, DMSO-d6) δH: 9.6 (2H,
m, NH), 7.7 (3H, s, OH), 7.3 (1H, s, NH), 3.4 (6H, t, J = 6 Hz,
CH2), 3.0 (4H, q, J = 6 Hz, CH2), 2.6 (4H, t, J = 6 Hz, CH2), 2.3
(4H, t, J = 6 Hz, CH2), 1.9 (3H, s, CH3), 1.8 (2H, s, CH2), 1.7
(3H, s, CH), 1.5-1.6 (12H, m, CH2), 1.0-1.5 (18H, m, CH2).
13C NMR (300 MHz, d6-DMSO) δC: 171.6, 170.1, 50.4, 42.5,
36.8, 30.2, 29.2, 28.4, 27.9, 26.4, 23.9, 20.7. MS: m/z ESI
(positive ion). Found [M þ Hþ]þ 737.44 (100), [C37H65N6O9]þ
requires 737.95. MeOH (320 nm), ε = 16.53 M-1 cm-1. Anal.
Calcd for C37H64N6O9: C, 60.30% H; 8.75%; N, 11.41%.
Found: C, 58.37% H; 8.53%; N, 11.72%.
MeOH in Tris HCl (100 mM, pH 7.4) and the pH value of the
3
solution adjusted to pH 7.4 prior to making the solution to
volume. A stock solution of Fe(III) (0.1 mM) was prepared from
FeCl3 6H2O in a similar fashion to the compounds (20% v/v
3
MeOH in 100 mM Tris, pH 7.4). Molar ratios of Fe:compound
were 0, 0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.8, 0.9, and 1, with 0
containing no iron and 1 containing no ligand. All samples had a
final concentration ([Fe(III)] þ [ligand]) of 0.1 mM and electro-
nic absorption spectra were acquired from 200 to 800 nm, with
the absorbance value of 450 nm absorbance used to construct
the Job’s plot.
Fe(III)-Loading of 4-10 for ESI-MS and RP-HPLC. An
aliquot of
a freshly prepared methanolic solution of
FeCl3 6H2O (100 μL of 10 mM) was added to an aliquot
3
(100 μL of 10 mM) of 4-8 in methanol. For 9 and 10, the
volume ratio of FeCl3 6H2O:compound was 150:50 μL.
3
Partition Coefficients. Analytical RP-HPLC was used to
estimate the log of the partition coefficients (logP) of 4-10.
Samples (5 mM) of 4-10 in MeOH (HPLC grade) were filtered
(0.22 μm) and analyzed by analytical RP-HPLC, together with a
set of compounds with known logP values (1,2-benzenedicarbo-
xylic acid dimethylester (logP = 1.59), 1,2-benzenedicarboxylic
acid diethylester (logP = 2.48), naphthalene (logP = 3.27), and
dibenzofuran (logP = 3.76)). The capacity factor (k) was deter-
mined for the samples using eq 1, where tr was the retention time of
the compound and to was the deadtime (to = 1.81 min). The log of
the partition coefficient (logP) was calculated according to eq 2.76
DFOB-MPOAc (8). The residue was triturated with diethyl-
ether (5 ꢀ 5 mL), recrystallized from methanol, and purified by
RP-HPLC (90:10 (A:B) to 40:60 (A:B) over 30 min) to give 8 as
an off-white solid (0.23 g, 73%). 1H NMR (200 MHz, DMSO-
d6) δH: 7.1 (2H, d, J = 7.1 Hz, CH), 6.8 (2H, d, J = 7.0 Hz, CH),
4.4 (2H, s, CH2), 3.5 (6H, t, J = 6.8 Hz, CH2), 3.0 (4H, m, CH2),
2.5 (4H, m, CH2), 2.3 (4H, m, CH2), 2.2 (3H, s, CH3), 1.9 (3H, s,
CH3), 1.3-1.5 (12H, m, CH2), 1.2 (6H, m, CH2). 13C NMR (200
MHz, DMSO-d6) δC: 21.1, 21.4, 24.5, 27.1, 28.5, 29.8, 31.0, 47.8,
48.2, 68.2, 115.6, 130.8, 156.7, 168.6, 172.3, 173.0. MS: m/z ESI
(positive ion). Found [M þ Naþ]þ 731.7 (100), [C34H56N6-
O10Na]þ requires 731.40. MeOH (320 nm), ε = 101.63 M-1
cm-1. Anal. Calcd for C34H56N6O10: C, 57.61% H; 7.96%; N,
11.86%. Found: C, 56.60% H; 7.31%; N, 11.73%.
DFOB-L1D (9). The residue was triturated with diethylether
(5 ꢀ 5 mL), recrystallized from methanol, and purified by RP-
HPLC (95:5 (A:B) to 40:60 (A:B) over 30 min) to give 9 as a very
pale-pink solid (0.11 g, 70%). 1H NMR (300 MHz, CD3OD) δH:
8.2 (1H, d, J = 7.0 Hz, CH), 7.2 (1H, d, J = 7.0 Hz, CH), 5.2
(2H, s, CH2), 3.6 (6H, t, J = 5.6 Hz, CH2), 3.2 (4H, t, J = 6.9 Hz,
CH2), 2.8 (4H, t, J = 6.8 Hz, CH2), 2.5 (4H, t, J = 7.0 Hz, CH2),
2.1 (3H, s, CH3), 1.5-1.7 (12H, m, CH2), 1.3-1.4 (6H, m, CH2),
(OH not observed). 13C NMR (300 MHz, CD3OD) δC: 19.2,
23.9, 26.2, 26.3, 27.9, 28.8, 28.9, 30.4, 39.3, 39.7, 48.9, 58.0,
113.1, 139.8, 142.8, 143.9, 159.7, 165.6, 172.5, 173.5, 173.9. MS:
m/z ESI (positive ion). Found [M þ Hþ]þ 726.6 (65), [M þ
Naþ]þ 748.7 (100), [C46H61N9O11Na]þ requires 748.8. MeOH
k ¼ ðtr -toÞ=to
(1Þ
log k ¼ a þ blog P
(2Þ
Partition coefficients were also determined using the shake-
flask method with presaturated 1-octanol and water solutions
as follows. An aliquot (1 mL) of water was added to an aliquot of
1-octanol containing dissolved 4-10 (1 or 2 mg) in a glass vial,
and the mixture was shaken overnight at RT. Aliquots (20 μL) of
each phase were analyzed by analytical RP-HPLC using the
conditions described above.
Molecular Modeling. Models were built in HyperChem 7.5
using data from X-ray crystal structures of [Fe(1(3-))]þ,17 2,5-
dioxopyrrolidin-1-yl adamantane-1-carboxylate,61 [Cr(2(1-))3],73
and [Fe{(3,5-bis(2-hydroxyphenyl)-1-phenyl-1,2,4-triazole)(2-)}2].69
The structure of the organic ancillary fragment was minimized