Cyanobacterial Depsipeptide with Potent Cytotoxicity
Journal of Natural Products, 2009, Vol. 72, No. 6 1015
with EtOAc. The organic layer was dried under N2 and purified using
HPLC (17:3 CH3OH/H2O) to give the base hydrolysis product 2 in
>98% yield and gave the following FABMS (3-nitrobenzyl alcohol):
m/z 973 (35), 803 (25), 675 (41), 630 (52), 505 (30), 469 (100), 356
(66), 342 (54), 299 (82), 244 (31).
for an adequate trial against HCT-116 at doses closer to the MTD;
if found effective, evaluations should be repeated both in a multiple
treatment schedule and against other tumor types.
Conclusions
Absolute Configuration of the Standard Amino Acid Residues
in 1. Approximately 1.0 mg of 1 was hydrolyzed with 6 N HCl (Ace
high-pressure tube, microwave, 1.0 min), and the hydrolysate was
evaporated to dryness and resuspended in H2O (50 µL). A 0.1%
1-fluoro-2,4-dinitrophenyl-5-L-alaninamide (L-Marfey’s reagent) solu-
tion in acetone (50 µL) and 20 µL of 1 N NaHCO3 were added, and
the mixture was heated at 40 °C for 1 h. The solution was cooled to
room temperature, neutralized with 10 µL of 2 N HCl, and evaporated
to dryness. The residue was resuspended in H2O (50 µL) and analyzed
by reversed-phase HPLC (LiChrospher 100 C18, 5 µm, UV detection
at 340 nm) using a linear gradient of 9:1 50 mM triethylammonium
phosphate (TEAP) buffer (pH 3.1)/CH3CN to 1:1 TEAP/CH3CN over
60 min. The retention times (tR, min) of the derivatized residues in the
hydrolysate of 1 matched L-Ala (22.1; D-Ala, 26.9), N-Me-L-Val (36.5;
N-Me-D-Val, 39.7), and N-Me-L-Phe (38.5; N-Me-D-Phe, 39.2). Given
that only N-Me-L-Ile and N-Me-L-allo-Ile were commercially available,
the D-Marfey’s reagent was used to make N-Me-D-Ile and N-Me-D-
allo-Ile chromatographic equivalents. The retention time of the Ile
derivative from the hydrolysate matched that of N-Me-L-Ile (40.7 min;
N-Me-L-allo-Ile, 41.2 min; N-Me-D-Ile, 44.2 min; N-Me-D-allo-Ile, 44.7
min).
Absolute Configuration of the Nonstandard Amino- and Hy-
droxy-Acid Residues in 1. Determination of the absolute configuration
for the 3-amino-2-methylpentanoic (Map), 2-hydroxy-3-methylpen-
tanoic (HMPA), and 4-amino-2,2-dimethyl-3-oxopentanoic acid (Ibu)
residues was accomplished using a combination of Marfey’s method
and chiral HPLC. Authentic chromatographic standards for the Map
and Ibu residues were obtained as gifts from the laboratory of R. E.
Moore, Department of Chemistry, University of Hawaii. In both cases,
approximately 1.0 mg of 1 was hydrolyzed with 6 N HCl (Ace high-
pressure tube, microwave, 1.0 min), and the hydrolysate was evaporated
to dryness and resuspended in H2O (50 µL). A 0.1% 1-fluoro-2,4-
dinitrophenyl-5-L-alaninamide (Marfey’s reagent) solution in acetone
(50 µL) and 20 µL of 1 N NaHCO3 were added, and the mixture was
heated at 40 °C for 1 h. The solution was cooled to room temperature,
neutralized with 10 µL of 2 N HCl, and evaporated to dryness. The
residue was resuspended in H2O (50 µL) and analyzed by reversed-
phase HPLC (LiChrospher 100 C18, 5 µm, UV detection at 340 nm)
using a linear gradient of 9:1 50 mM triethylammonium phosphate
(TEAP) buffer (pH 3.1)/CH3CN to 4:6 TEAP/CH3CN over 60 min.
Retention times, under these conditions, for the hydrolysate of 1
indicated 2S,3R-Map (47.0 min; 2R,3S-Map, 36.5 min; 2S,3S-Map, 37.0
min; 2R,3R-Map, 28.9 min) and 4S-Ibu (34.2 min; 4R-Ibu, 32.8 min,
respectively).
Preparation and Chiral Analysis of HMPA. L-Ile (100 mg, 0.75
mmol) was dissolved in 50 mL of 0.2 N perchloric acid (0 °C). To this
was added a cold (0 °C) solution of NaSO3 (1.4 g, 20 mmol) in 20 mL
of H2O with rapid stirring. With continued stirring the reaction mixture
was allowed to reach room temperature until evolution of N2 subsided
(∼30 min). The solution was then brought to boil for 3 min, cooled to
room temperature, and saturated with NaCl. The mixture was then
extracted with Et2O and dried under vacuum. The three other stereoi-
somers 2R,3R-HMPA, 2R,3S-HMPA, and 2S,3R-HMPA were synthe-
sized in a similar manner from D-Ile, D-allo-Ile, and L-allo-Ile,
respectively.22 A portion of the resultant oil was dissolved in aqueous
2 mM CuSO4 buffer for HPLC. The retention time [Chirex-D, isocratic
system (85:15) 2 mM CuSO4: MeCN] of the natural product hydrolysate
matched that for 2S,3S-HMPA (17.1 min; 2R,3S-HMPA, 11.8 min;
2S,3R-HMPA, 9.2 min; and 2R,3R-HMPA, 21.2 min, respectively).
Determination of IC50 Values for 1 and 2 against HCT-116 Cells.
Concentration-cell number studies (IC50 assay) were carried out against
HCT-116 cells. These cells were grown in 5 mL culture medium
(RPMI-1640 + 15% FBS containing 1% penicillin-streptomycin and
1% glutamine) at 37 °C and 5% CO2 at a starting concentration of 5 ×
104 cells/T25 flask. On day 3, cells were exposed to different
concentrations of the drug. Flasks were incubated for 120 h (5 days)
in a 5% CO2 incubator at 37 °C, and the cells were harvested with
trypsin, washed once with HBSS, and then resuspended in HBSS and
DMMC (1), a new cyclic depsipeptide from the marine cyano-
bacterium L. majuscula, was isolated through a cancer cell
cytotoxicity assay-directed process. As such, it represents the newest
member of the majusculamide/lyngbyastatin natural product group
and extends our knowledge of the range of methylation patterns
possible within this skeletal class. DMMC displays both a mech-
anism and potency of biological activity that is consistent with the
most active members in this structural class.21 Remarkably, we
observed a similar high level of cytotoxic activity in the ring-
opened, linear form of this compound with IC50 values equivalent
to those of the parent structure. Thus, in vitro cellular and limited
in vivo therapeutic studies indicate the potential for DMMC, and
possibly its linearized form, in cancer treatment.
The majusculamide/lyngbyastatin structure class displays inter-
esting features from a biosynthetic perspective. The first and most
obvious is the variable degree of methylation on the mixed PKS/
NRPS backbone. As illustrated in Figure 3, there are five sites of
variable C-, N-, and O-methylation, which give rise to the metabolite
diversity found in this structural class. While some of the variability
can be attributed to promiscuity of amino acid incorporation during
NRPS chain extension (e.g., Tyr/Phe, Ile/Leu, Map/Ampa), ad-
ditional variability derives from variable methylation of the tyrosine
oxygen as well as the amide nitrogen of several amino acid residues.
As such, a growing appreciation of structure-activity relationships
in this metabolite class is developing from these naturally occurring
analogues and, combined with the antitumor efficacy studies
performed herein, should stimulate additional synthetic efforts to
more completely evaluate this group of natural product for useful
properties.
Experimental Section
General Experimental Procedures. Optical rotation was measured
on a Perkin-Elmer 243 polarimeter, UV recorded on a Waters Millipore
Lambda-Max model 480 LC spectrophotometer, and IR recorded on a
Nicolet 510 Fourier transform IR spectrophotometer. All NMR data
were recorded on Bruker AM400 (Table 1) and DRX300 MHz
(Supporting Information) spectrometers, with the solvent CDCl3 used
as an internal standard (δC 77.0, δH 7.26). Chemical shifts are reported
in ppm, and coupling constants (J) are reported in Hz. The FAB mass
spectrum and CID mass spectrum were recorded on Kratos MS50TC
and Perkin-Elmer Sciex API3 mass spectrometers, respectively. HPLC
isolation of 1 was performed using Waters 515 HPLC pumps, and all
solvents were either freshly distilled or purchased as HPLC grade.
Cyanobacterial Collection and Identification. The marine cyano-
bacterium Lyngbya majuscula was collected from the Kauviti Reef of
Yanuca Island, Fiji, on February 16, 2000. The specimen was identified
morphologically by WHG (voucher specimen available as collection
number VKR-16/Feb/00-05). The material was stored in 2-propanol
at reduced temperature until extraction.
Isolation of DMMC (1). Approximately 300 g dry weight of the
cyanobacterium was repetitively extracted with 2:1 CH2Cl2/CH3OH to
yield 5.5 g of crude extract. A portion of the extract (5.3 g) was
fractionated by vacuum liquid chromatography (VLC) over silica gel.
The fraction eluting with 100% EtOAc was further chromatographed
by C18 SPE (7:3 CH3OH/H2O) followed by RP HPLC (Phenomenex
Sphereclone 5 µm ODS column, 17:3 CH3OH/H2O) to yield 27.5 mg
of pure 1.
Desmethoxymajusculamide C (1): colorless glassy oil; [R]22D -104
(c 1.86, CH2Cl2); IR (neat) 3315, 2966, 2934, 2877, 1739, 1641, 1519,
1460, 1410, 1286 cm-1 1H and 13C NMR data, see Table 1 and
;
Supporting Information; HRFABMS m/z [M + H]+ 955.5867 (calcu-
lated for C49H79N8O11, 955.5868).
Base Hydrolysis of 1. Approximately 6 mg of 1 was suspended in
2 mL of a 1:1 CH3OH/0.5 M NaOH solution and allowed to stand
overnight at room temperature. The CH3OH was removed by evaporat-
ing under N2 and the mixture neutralized with HCl and then extracted