H. Chen et al. / Bioorg. Med. Chem. 17 (2009) 3980–3986
3985
3.4.12. 2-(2-Chloro-6-fluorophenyl)-3-(5-ethyl-4,6-dimethyl-
pyrimidin-2-yl)thiazolidin-4-one (6c)
IR (KBr)
: 1714 cmꢀ1 (C@O), 1H NMR (CDCl3) d: 7.17–7.13 (m,
3H, Ar-H; CH), 6.95–6.90 (m, 1H, Ar-H), 4.18 (d, 1H, J = 15.7 Hz,
CH2), 3.85 (d, 1H, J = 14.1 Hz, CH2), 2.56 (q, 2H, J = 7.6 Hz, CH2),
2.40 (s, 6H, CH3), 1.07 (t, 3H, J = 7.6 Hz, CH3). MS (ESI) m/z: 389.2
([M+Na]+). Anal. Calcd for C17H17ClFN3OS: C, 55.81; H, 4.68; N,
11.49. Found: C, 55.73; H, 4.62; N, 11.54.
3.5. In vitro HIV-RT kit assay34
m
The HIV-RT inhibition assay was performed by using an RT as-
say kit (Roche), and the procedure for assaying RT inhibition was
performed as described in the kit protocol. Briefly, the reaction
mixture consists of template/primer complex, 20-deoxy-nucleo-
tide-50-triphosphates (dNTPs) and reverse transcriptase (RT) en-
zyme in the lysis buffer with or without inhibitors. After 1 h
incubation at 37 °C the reaction mixture was transferred to strep-
tavidine-coated microtitre plate (MTP). The biotin labeled dNTPs
that are incorporated in the template due to activity of RT were
bound to streptavidine. The unbound dNTPs were washed using
wash buffer and antidigoxigenin-peroxidase (DIG-POD) was added
in MTP. The DIG-labeled dNTPs incorporated in the template was
bound to anti-DIG-POD antibody. The unbound anti-DIG-POD
was washed and the peroxide substrate (ABST) was added to the
MTP. A colored reaction product was produced during the cleavage
of the substrate catalyses by a peroxide enzyme. The absorbance of
the sample was determined at OD 405 nM using microtiter plate
ELISA reader. The resulting color intensity is directly proportional
to the actual RT activity. The percentage inhibitory activity of RT
inhibitors was calculated by comparing to a sample that does not
contain an inhibitor. The percentage inhibition was calculated by
formula as given below: % Inhibition = 100 ꢀ [(OD 405 nm with
inhibitor/OD 405 nm without inhibitor) ꢁ 100].
3.4.13. 2-(2-Chloro-6-fluorophenyl)-3-(5-propyl-4,6-dimethyl-
pyrimidin-2-yl)thiazolidin-4-one (6d)
IR (KBr) m
: 1712 cmꢀ1 (C@O), 1H NMR (CDCl3) d: 7.15–7.13 (m,
3H, Ar-H; CH), 6.95–6.90 (m, 1H, Ar-H), 4.18 (d, 1H, J = 15.7 Hz,
CH2), 3.85 (d, 1H, J = 15.3 Hz, CH2), 2.49 (t, 2H, J = 7.8 Hz, CH2),
2.39 (s, 6H, CH3), 1.45 (q, 2H, J = 7.2 Hz, CH2), 0.97 (t, 3H,
J = 7.2 Hz, CH3). MS (ESI) m/z: 402.9 ([M+Na]+). Anal. Calcd for
C18H19ClFN3OS: C, 56.91; H, 5.04; N, 11.06. Found: C, 56.95; H,
5.12; N, 11.07.
3.4.14. 2-(2-Chloro-6-fluorophenyl)-3-(5-butyl-4,6-dimethyl-
pyrimidin-2-yl)thiazolidin-4-one (6e)
IR (KBr) m
: 1712 cmꢀ1 (C@O), 1H NMR (CDCl3) d: 7.17–7.14 (m,
3H, Ar-H; CH), 6.95–6.90 (m, 1H, Ar-H), 4.18 (dd, 1H, J = 15.7 Hz,
1.6 Hz, CH2), 3.84 (d, 1H, J = 14.9 Hz, CH2), 2.55–2.48 (m, 2H,
CH2), 2.39 (s, 6H, CH3), 1.40–1.38 (m, 4H, CH2), 0.93 (t, 3H,
J = 6.8 Hz, CH3). MS (ESI) m/z: 417.6 ([M+Na]+). Anal. Calcd for
C19H21ClFN3OS: C, 57.93; H, 5.37; N, 10.67. Found: C, 57.90; H,
5.34; N, 10.62.
Acknowledgements
The financial supports from the National Natural Science Foun-
dation of China (NSFC) (20672027), the Natural Science Foundation
of Hebei (2008000588), the Research Foundation of the Ministry of
Education of China (206013) and the Postdoctoral Foundation of
China are gratefully acknowledged.
3.4.15. 2-(2-Chloro-6-fluorophenyl)-3-(5-pentyl-4,6-dimethyl-
pyrimidin-2-yl)thiazolidin-4-one (6f)
IR (KBr) m
: 1718 cmꢀ1 (C@O), 1H NMR (CDCl3) d: 7.12–7.10 (m,
3H, Ar-H; CH), 6.92–6.87 (m, 1H, Ar-H), 4.15 (d, 1H, J = 15.7 Hz,
CH2), 3.82 (d, 1H, J = 15.4 Hz, CH2), 2.50–2.486 (m, 2H, CH2), 2.37
(s, 6H, CH3), 1.40–1.30 (m, 6H, CH2), 0.87 (t, 3H, J = 6.87 Hz, CH3).
MS (ESI) m/z: 432.3 ([M+Na]+). Anal. Calcd for C20H23ClFN3OS: C,
58.89; H, 5.68; N, 10.30. Found: C, 58.85; H, 5.67; N, 10.36.
References and notes
1. Rao, A.; Balzarini, J.; Carbone, A.; Chimirri, A.; De Clercq, E.; Monforte, A. M.;
Monforte, P.; Pannecouque, C.; Zappalà, M. Antivir. Res. 2004, 63, 79.
2. Rao, A.; Balzarini, J.; Carbone, A.; Chimirri, A.; De Clercq, E.; Monforte, A. M.;
Monforte, P.; Pannecouque, C.; Zappalà, M. Il Farmaco 2004, 59, 33.
3. Barreca, M. L.; Chimirri, A.; De Clercq, E.; De Luca, L.; Monforte, A. M.; Monforte,
P.; Rao, A.; Zappalà, M. Il Farmaco 2003, 58, 259.
3.4.16. 2-(2-Chloro-6-fluorophenyl)-3-(5-allyl-4,6-dimethyl-
pyrimidin-2-yl)thiazolidin-4-one (6g)
IR (KBr) m
: 1713 cmꢀ1 (C@O), 1H NMR (CDCl3) d: 7.16–7.15 (m,
4. Rao, A.; Carbone, A.; Chimirri, A.; De Clercq, E.; Monforte, A. M.; Monforte, P.;
Pannecouque, C.; Zappalà, M. Il Farmaco 2003, 58, 115.
3H, Ar-H; CH), 6.96–6.90 (m, 1H, Ar-H), 5.75–5.82 (m, 1H, @CH),
5.04 (d, 1H, J = 10.4 Hz, @CH2), 4.80 (d, 1H, J = 17.2 Hz, @CH2)
4.18 (d, 1H, J = 15.6 Hz, CH2), 3.85 (d, 1H, J = 14.8 Hz, CH2), 3.28–
3.29 (m, 2H, CH2), 2.39 (s, 6H, CH3). MS (ESI) m/z: 401.3
([M+Na]+). Anal. Calcd for C18H17ClFN3OS: C, 57.21; H, 4.53; N,
11.12. Found: C, 57.29; H, 4.48; N, 11.07.
5. Barreca, M. L.; Balzarini, J.; Chimirri, A.; De Clercq, E.; De Luca, L.; Höltje, H. D.;
Höltje, M.; Monforte, A. M.; Monforte, P.; Pannecouque, C.; Rao, A.; Zappalà, M.
J. Med. Chem. 2002, 45, 5410.
6. Rao, A.; Carbone, A.; Chimirri, A.; De Clercq, E.; Monforte, A. M.; Monforte, P.;
Pannecouque, C.; Zappalà, M. Il Farmaco 2002, 57, 747.
7. Barreca, M. L.; Chimirri, A.; De Luca, L.; Monforte, A. M.; Monforte, P.; Rao, A.;
Zappala, M.; Balzarini, J.; De Clercq, E.; Pannecouque, C.; Witvrouw, M. Bioorg.
Med. Chem. Lett. 2001, 11, 1793.
8. Rawal, R. K.; Tripathi, R.; Katti, S. B.; Pannecouque, C.; De Clercq, E. Bioorg. Med.
Chem. 2007, 15, 1725.
9. Rawal, R. K.; Solomon, V. R.; Prabhakar, Y. S.; Katti, S. B.; De Clercq, E. Comb.
Chem. High Throughput Screening 2005, 8, 439.
10. Prabhakar, Y. S.; Solomon, V. R.; Rawal, R. K.; Gupta, M. K.; Katti, S. B. QSAR
Comb. Sci. 2004, 23, 234.
11. Prabhakar, Y. S.; Rawal, R. K.; Gupta, M. K.; Solomon, V. R.; Katti, S. B. Comb.
Chem. High Throughput Screening 2005, 8, 431.
12. Roy, K.; Leonard, J. T. QSAR Comb. Sci. 2005, 24, 579.
13. Ravichandran, V.; Prashantha Kumar, B. R.; Sankar, S.; Agrawal, R. K. Eur. J. Med.
Chem. 2009, 44, 1180.
14. Murugesan, V.; Prabhakar, Y. S.; Katti, S. B. J. Mol. Graphics Modell. 2009, 27, 735.
15. Balzarini, J.; Orzeszko-Krzesin´ ska, B.; Maurin, J. K.; Orzeszko, A. Eur. J. Med.
Chem. 2009, 44, 303.
3.4.17. 2-(2-Chloro-6-fluorophenyl)-3-(5-propanenitrile-4,6-
dimethylpyrimidin-2-yl) thiazolidin-4-one (6h)
IR (KBr) m
: 1715 cmꢀ1 (C@O), 1H NMR (CDCl3) d: 7.15 (m, 3H,
CH, Ar-H), 6.93 (m, 1H, Ar-H), 4.19 (d, 1H, J = 15.6 Hz, CH2), 3.85
(d, 1H, J = 14.4 Hz, CH2), 2.96 (t, 2H, J = 7.2 Hz, CH2), 2.49 (t, 2H,
J = 7.6 Hz, CH2), 2.46 (s, 6H, CH3). MS (ESI) m/z: 388.9 ([M+H]+).
Anal. Calcd for C20H18ClFN2OS: C, 61.77; H, 4.67; N, 7.20. Found:
C, 61.82; H, 4.61; N, 7.09.
3.4.18. 2-(2-Chloro-6-fluorophenyl)-3-(5-bromo-4,6-dimethyl-
pyrimidin-2-yl)thiazolidin-4-one (6i)
16. Balzarini, J.; Orzeszko-Krzesin´ ska, B.; Maurin, J. K.; Orzeszko, A. Eur. J. Med.
Chem. 2007, 42, 993.
IR (KBr) m
: 1736 cmꢀ1 (C@O), 1H NMR (CDCl3) d: 7.17–7.12 (m,
17. Rawal, R. K.; Tripathi, R.; Katti, S. B.; Pannecouque, C.; De Clercq, E. Eur. J. Med.
Chem. 2008, 43, 2800.
18. Rawal, R. K.; Tripathi, R.; Katti, S. B.; Pannecouque, C.; De Clercq, E. Bioorg. Med.
Chem. 2007, 15, 3134.
19. Rawal, R. K.; Prabhakar, Y. S.; Katti, S. B.; De Clercq, E. Bioorg. Med. Chem. 2005,
13, 6771.
3H, Ar-H; CH), 6.96–6.91 (m, 1H, Ar-H), 4.18 (d, 1H, J = 15.8 Hz,
CH2), 3.85 (d, 1H, J = 15.4 Hz, CH2), 2.53 (s, 6H, CH3). MS (ESI) m/
z: 438.9 ([M+Na]+). Anal. Calcd for C15H12BrClFN3OS: C, 43.24; H,
2.90; N, 10.08. Found: C, 43.27; H, 2.89; N, 10.05.