38
S. Thompson et al. / Bioorganic Chemistry 64 (2016) 37–41
NH2
N
by-products. After optimisation of the reaction conditions, fluori-
nation of aldehyde 5 with DeoxofluorÒ in THF furnished 6 with
fewer fluorinated by-products, ultimately offering 6 in 10% yield
after purification. With protected F2DA 7 in hand, the benzoyl
groups were cleaved by reaction of 6 with a freshly saturated solu-
tion of ammonia in methanol, in a sealed tube at 60 °C for 16 h.
After isolation, the resultant acetonide was hydrolysed in a mix-
ture of TFA and water, to provide F2DA 7 as a colourless powder,
in good yield. With a sample of F2DA 7 in hand, we set out to
explore its interaction with the fluorinase enzyme.
NH2
N
COO
N
N
N
N
-Met
L
F
H3N
N
N
O
O
F
S
Me
fluorinase
OH
OH
HO
HO
SAM
1
FDA
2
Scheme 1. The reversible synthesis of a C–F bond from fluoride and S-adenosyl-
methionine 1 (SAM) by the fluorinase enzyme.
2.2. Isothermal titration calorimetry
We envisioned utilising the fluorinase-catalysed reaction in the
reverse direction, where incubation of a difluoromethylated sub-
strate (F2DA 7) was proposed to generate a fluoro–SeSAM interme-
The binding of F2DA 7 to the fluorinase was investigated using
isothermal titration calorimetry (ITC). Accordingly, a solution of
F2DA 7 in a phosphate buffer was titrated into a solution of the
fluorinase in the same buffer. The binding curve obtained is
illustrated below in Fig. 1A, and the data was fitted to a 1:1
isotherm assuming a single binding site. A similar experiment
was conducted by titrating FDA 2, the natural substrate, into the
fluorinase for comparison, and the resultant titration curve is illus-
trated in Fig. 1B. The titration curve revealed that F2DA 7 exhibited
strong binding to the fluorinase. The association constant (Ka) for
this interaction was calculated to be 27.1 2.01 ꢁ 105 Mꢀ1. Com-
parison of the association constant with that of FDA 2 revealed that
F2DA 7 bound with slightly higher affinity for the fluorinase, by a
factor of nearly two. Both compounds show favourable enthalpic
contributions, but F2DA 7 shows a greater exotherm upon binding,
likely due to increased lipophilicity of the difluoromethyl group
compared to the fluoromethyl group. The greater enthalpic contri-
bution for F2DA 7 is compensated for by a larger entropic penalty,
which results in the similar nett free energy change to that
observed for FDA 2. The presence of the second fluorine substituent
at C-50 appears to increase the affinity of the nucleoside for the
enzyme.
diate upon reaction with L-selenomethionine [6] as the incoming
nucleophile. In this paper, we describe a modified synthesis of
F2DA 7, and an exploration of this putative substrate for selective
substitution of one of the fluorine atoms of a difluoromethyl group,
attempting to capitalise on the fluoride-activating properties of the
fluorinase enzyme.
2. Results and discussion
2.1. Synthesis of F2DA 7
The synthesis of 50,50-difluoro-50-deoxyadenosine 7 has been
previously reported by Jarvi et al. [32,33], where fluorination of
N,N-dibenzoyl-20,30-O-isopropylidneadenosine-50-aldehyde 5 with
diethylaminosulfur trifluoride (DAST) was the key fluorination
step. In a modified version of their synthesis, adenosine 3 was
protected as its 20,30-acetonide with 2,2-dimethoxypropane in
acetone, catalysed by perchloric acid, as shown in Scheme 2. The
resultant acetonide was dibenzoylated in excellent yield with
TMSCl, and an excess of benzoyl chloride to furnish 4. Oxidation
of 4 under Moffatt conditions, but substituting DCC for EDCI.HCl,
gave excellent conversion of the alcohol to a mixture of aldehyde 5
and its hydrate, without the requirement for trapping as the ami-
nal as reported by Jarvi et al. [32,33]. Azeotropic removal of water
by repeated co-evaporation with toluene furnished aldehyde 5 in
quantitative yield, which was used without further purification.
Jarvi et al. [32,33] report a low yield for the fluorination of 5
(18%) using DAST in DCM, however, we found that use of the
reported conditions led to the formation of multiple fluorinated
2.3. Incubation of F2DA 7 with the fluorinase
Confident that the candidate substrate, F2DA 7, binds to the
enzyme, attention turned to investigating whether the fluorinase
was able to catalyse substitution of one of the fluorine atoms of
with
L-selenomethionine (L-SeMet) rather than L-methionine.
Selenium (Se) is a better nucleophile [34] than sulfur due to the
presence of a higher energy HOMO on the selenium atom, and
NH2
N
NBz2
N
NBz2
N
N
N
N
N
N
1. 2,2-dimethoxypropane,
HClO4
80%
EDCI, DMSO,
O
,
acetone,
dichloroacetic acid
N
N
N
N
O
O
O
HO
HO
H
pyridine,
2. TMSCl,
BzCl,
quant.
99%
O
O
O
O
HO OH
Me Me
Me Me
3
4
5
Deoxofluor®
THF
10%
NH2
NBz2
N
N
N
N
F
F
1. NH3
2.
,
35%
86%
MeOH,
N
O
N
N
N
O
F
F
H
TFA, 2O,
HO OH
O
O
Me Me
7
6
Scheme 2. Synthesis of F2DA 7.