Y. Xia et al. / Bioorg. Med. Chem. Lett. 21 (2011) 2533–2536
2535
tolerated in CTX-M-9a and TEM-1. However, they demonstrated
improved affinity in class C b-lactamase. Compound 15n was ex-
tremely potent against AmpC P99 and CMY-2 with a Ki value in
carboxylic acid at p-position, however, resulted in diminished class
A b-lactamase activity. The SAR described here would be very
useful for further design and development of broad-spectrum
b-lactamase inhibitors. Further studies to improve spectrum of
b-lactamase inhibition are underway and will be reported in due
course.
0.02 lM, suggesting a canonical anion recognition residue around
the carboxylate in AmpC P99 and CMY-2, which revealed the
importance of this group for recognition by AmpC P99, CMY-2
b-lactamases.
With promising inhibitory activity of 15n in AmpC P99 and
CMY-2, we further replaced the phenyl ring with heterocyclic rings
to investigate the effects of lipophilicity as lipophilic compounds
tend to be good substrates for efflux pumps. As expected, pyrazine
(22) and pyrimidine (24) carboxylic acids showed very potent inhi-
bition on AmpC P99 and CMY-2 with Ki values in the low nanomo-
lar range. These potent class C b-lactamase inhibitors were then
tested for their anti-bacterial inhibition in E. cloacae and Escherichia
coli with a plasmid bearing the CMY-2 class C b-lactamase. As
shown in Table 3, compound 22 restored antibacterial activity of
References and notes
1. Livermore, D. M. J. Antimicrob. Chemother. 1998, 41, 25–41.
2. Ho, J.; Tambyah, P. A.; Paterson, D. L. Curr. Opin. Infect. Dis. 2010, 23,
546.
3. Bush, K.; Jacoby, G. A.; Medeiros, A. A. Antimicrob. Agents Chemother. 1995, 39,
1211–1233.
4. Tondi, D.; Calo, S.; Shoichet, B.; Costi, M. P. Bioorg. Med. Chem. 2010, 3416–
3419.
5. (a) Ambler, R. P. Philos. Trans. R. Soc. Lond. (Biol.) 1980, 289, 321–331; (b) Kiener,
P. A.; Waley, S. G. Biochem. J. 1978, 169, 197–204.
6. Morandi, S.; Morandi, F.; Casell, E.; Schoichet, B.; Prati, F. Bioorg. Med. Chem.
Lett. 2008, 1195–1205.
7. Rock, F. L.; Mao, W.; Yaremchuk, A.; Tukalo, M.; Crepin, T.; Zhou, H.; Zhang, Y.-
K.; Hernandez, V.; Akama, T.; Baker, S. J.; Plattner, J. J.; Shapiro, L.; Martinis, S.
A.; Benkovic, S. J.; Cusack, S.; Alley, M. R. K. Science 2007, 316, 1759.
8. Ding, D.; Zhao, Y.; Meng, Q.; Xie, D.; Nare, B.; Chen, D.; Bacchi, C. J.; Yarlett,
N.; Zhang, Y. K.; Hernandez, V.; Xia, Y.; Freund, Y.; Abdulla, M.; Ang, K.;
Ratnam, J.; McKerrow, J.; Jacobs, R. T.; Zhou, H.; Plattner, J. Med. Chem Lett.
2010, 1, 165.
9. Experimental procedure for the preparation of compound 22: To a solution of 2-
hydroxy-4-methoxy-benzaldehyde 16 (30.0 g, 0.197 mol) and pyridine
(77.98 g, 0.986 mol) in dichloromethane (120 mL) was slowly added Tf2O
(83.44 g, 0.296 mol) at À10 to 0 °C over a 2.5-h period. The mixture was stirred
at 0 °C for 30 min. Ice-water (150 mL) was added, and the mixture was
acidified with diluted hydrochloric acid to pH 2. The resulting mixture was
extract with 50% EtOAc/hexanes (2 Â 400 mL). The extract was washed with
brine, dried and concentrated to dryness to give 51.01 g (91.1%) of compound
17 as pale-yellow oil. 1H NMR (400 MHz, CDCl3) d 10.13 (s, 1 H), 7.95 (d,
J = 8.79 Hz, 1 H), 7.03 (dd, J = 8.79, 2.34 Hz, 1 H), 6.88 (d, J = 2.34 Hz, 1 H), 3.93
(s, 3 H). MS (ESI) m/z = 285 [M+H]+. To a solution of bis(pinacolato)diborane
(58.66 g, 0.231 mol) in dioxane (600 mL) was added KOAc (52.33 g, 0.533 mol).
After degassed for 15 min, PdCl2(dppf) (13.0 g, 0.0178 mol) and 17 (50.51 g,
0.178 mol) were added to the reaction mixture. The mixture was stirred at
80 °C for 45 min. The reaction was quenched by adding ice-water (400 mL). The
resulting mixture was extract with 50% EtOAc/hexanes (2 Â 600 mL). The
extract was washed with brine, dried and concentrated to dryness. The residue
was purified by chromatography on silica gel (EtOAc/hexanes = 1:3) to give
43.48 g (93.2%) of 18 as pale-yellow waxy solid.1H NMR (400 MHz, CDCl3) d
10.88 (s, 1 H), 8.44 (d, J = 8.50 Hz, 1 H), 7.80 (d, J = 2.64 Hz, 1 H), 7.54 (dd,
J = 8.50, 2.64 Hz, 1 H), 4.41 (s, 3 H), 1.91 (s, 12 H). MS (ESI) m/z = 263 [M+H]+. To
a solution of 18 (25.0 g, 95.4 mmol) in methanol (160 mL) was slowly added
NaBH4 powder (10.82 g, 0.286 mol) at 0–10 °C. After stirred for 1 h at room
temperature, the mixture was concentrated to remove one-third of methanol.
The resulting mixture was cooled to 0 °C, acidified to pH 3 using diluted
hydrochloric acid and diluted to 2-fold with cold water. The white precipitate
was collected, washed with 30% MeOH/H2O, water, and dried to give 11.5 g
(73.5%) of 19 as white solid. 1H NMR (400 MHz, DMSO-d6) d 9.11 (s, 1 H), 7.29
(d, J = 8.21 Hz, 1 H), 7.23 (d, J = 2.34 Hz, 1 H), 7.03 (dd, J = 8.21, 2.34 Hz, 1 H),
ceftazidime from >128
expressing AmpC P99 at the concentration of 8
In addition, 22 restored antibacterial activity of ceftazidime to
0.5 g/mL against E. coli expressing CMY-2.
In conclusion, we have synthesized and discovered a series of
lg/mL to 1
l
g/mL against E. cloacae P99
lg/mL of inhibitor.
l
novel benzoxaborole b-lactamase inhibitors. The SAR around C6
benzoxaboroles, which included the influence of linkage, ring and
substitution patterns, was established. The most potent class C
b-lactamase inhibitor 22 may form productive hydrogen bonding
interactions with AmpC though its p-carboxylic acid. The same
Table 2
b-lactamase inhibition of substituted C6 phenoxybenzoxaboroles
OH
R1
R2
O
B
O
Compound R1
R2
Ki (lM)
CTX-
M-9a
TEM- AmpC
CMY-
2
1
P99
1
H
OCH3
OH
NH2
CH2OH
CH2NH2
OCH2Ph
CH2N(CH3)2
H
H
H
H
H
H
H
H
1.89
1.1
1.02
1.4
0.71
1.35
nta
2.75
8.4
3.33
2.27
7.72
1.44
6
1.51
2.65
3.12
6.09
8.43
nta
74.5
15.9
2.53
>46
14.7
12.3
46.8
nta
15a
15b
15c
15d
15e
15f
15g
15h
15i
15j
15k
15l
15m
15n
0.816
0.69
1.92
4.18
8.75
6.02
22.6
14.1
14.8
15.1
nta
1.01
1.36
0.56
1.08
0.51
>37
4.34
nta
COOH
H
4.90 (s,
2 H), 3.75 (s, 3 H). To a solution of 19 (10.0 g, 61.0 mmol) in
H
H
H
H
H
H
OCH3
NH2
CH2NH2
CH2N(CH3)2 21.1
COOEt
COOH
dichloromethane (400 mL) was slowly added BBr3 (134 mL, 1 M in DCM,
0.134 mol) at À10 to À5 °C. The mixture was stirred at 0 °C to room
temperature for 3 h. The reaction mixture was poured into ice-water
(300 mL). The resulting mixture was extract with EtOAc (600 mL). The
extract was washed with brine, dried and concentrated to dryness to give
9.11 g (99.6%) of 20 as off-white foam. 1H NMR (400 MHz, DMSO-d6) d 9.27 (br
s, 1 H), 9.03 (br s, 1 H), 7.16 (d, J = 8.20 Hz, 1 H), 7.08 (d, J = 2.34 Hz, 1 H), 6.86
(dd, J = 8.20, 2.34 Hz, 1 H), 4.90 (s, 2H). MS (ESI) m/z = 151 [M+H]+. To a solution
of 20 (0.37 g, 2.47 mmol) in anhydrous DMF (8 mL) were added Cs2CO3 (2.01 g,
2.71 mmol) and 5-chloro-pyrazine-2-carboxylic acid methyl ester (0.468 g,
2.71 mmol) at room temperature. After stirring at 90 °C for 1.5 h, the reaction
mixture was cooled to 0 °C, diluted with water (10 mL) and acidified to pH 3
using diluted hydrochloric acid. The off-white precipitate was collected,
washed with water and dried to give the crude product which was purified
by chromatography on silica gel (DCM/MeOH = 40:3) to give 0.47 g (66.5%) of
21. MS (ESI) m/z = 287 [M+H]+. To a solution of 21 (0.47 g, 1.64 mmol) in
methanol (16 mL) was added aqueous LiOH-H2O (0.345 g in 12 mL of water,
8.21 mmol) at 0 °C. The resulting mixture was stirred at 0 °C for 1 h. The
reaction mixture was acidified to pH 2 using diluted hydrochloric acid. The
white precipitate was collected, washed with water and 30% of EtOAc/hexanes
and dried to give 0.392 g (87.9%) of 22; mp 202–204 °C. 1H NMR (400 MHz,
DMSO-d6) d 9.28 (s, 1 H), 8.74 (d, J = 1.2 Hz, 1 H), 8.66 (d, J = 1.2 Hz, 1 H),
7.53–7.50 (m, 2 H), 7.37 (dd, J = 8.4 Hz, 2.0 Hz, 1 H), 5.03 (s, 2 H). MS (ESI) m/
z = 271 [MÀH]À.
8.73
0.812 13.3
3.14
3.11
18.9
40.63
5.55
0.02
>32
>32
0.02
a
Not tested.
Table 3
Inhibition of b-lactamases by aryl- and heteroarylbenzoxaboroles and Minimum
Inhibitory Concentration (MIC; lg/mL) of ceftazidime in presence of 8 lg/mL of these
b-lactamase inhibitors
Ki (l
M)
MIC (lg/mL)
CTX-M-9a TEM-1 AmpC CMY-2 E. cloacae
E. coli SYN2549
P99
P99AmpC CMY-2
1
1.89
1.02
18.9
20.4
14.7
0.71
0.02
0.02
0.08
1.51
0.02
0.02
0.07
32
8
1–-2
4–16
8
1
<0.5
<0.5
15n >32
22
24
>32
>32
10. Experimental procedure for the preparation of compound 24: To a solution of 20
(0.5 g, 3.33 mmol) in anhydrous DMF (15 mL) were added K2CO3 (1.382 g,