M. J. Meyers et al. / Bioorg. Med. Chem. Lett. 20 (2010) 1543–1547
1547
incubated at room temperature for 60–90 min. Plates were washed three
times with wash buffer (TBS + 0.1% Tween 20), and 40 L of cell lysate was
transferred to the ELISA capture plate and incubated for 2 h at room
temperature. Plates were again washed three times with wash buffer, and
out binding CSF-1R inhibitors with potential to be developed into
viable CSF-1R kinase inhibitor drug candidates.
l
50
mL in Superblock was added to the plate and incubated for 30 min at room
temperature. Plates were washed three times with wash buffer, and 50 L/
well of TMB solution (Bio-Rad, Cat# 172-1066) were added and plates were
incubated at room temperature for 1–10 min (incubation time varies
depending on color development). The color reaction was then stopped by
lL/well HRP-PY20 antibody (Santa Cruz, cat# SC508 Hrp) diluted to 1 lg/
Acknowledgments
l
The authors thank Daniel Walker and Michael Ennis for critical
review of this manuscript, and the Advanced Photon Source and
the staff at beamline 21ID-D for their help in the collection of dif-
fraction data.
addition of 50
lL/well of 0.1 N H2SO4 and plates were read on a
spectrophotometer with 450 nm OD.
4. Compound 3a bound to CSF-1R was crystallized following the protocol of
Schubert et al. (Ref. 5a). CSF-1R protein for the co-crystal with 12b was
obtained following the protocol of Emerson et al. (Ref. 5b). 11 mg/mL protein in
20 mM HEPES pH 7.5, 300 mM NaCl, 5 mM DTT was incubated with 4 mM
References and notes
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inhibitor at 4 °C overnight followed by the addition of 1
from Roche (per 50 L sample) and further incubated at 22 °C for 24 h. The
limited proteolysis was quenched with the addition of 0.5 L of 5 mg/mL
leupeptin. Hanging drop vapor diffusion experiments were set up by mixing
2.0 L of protein solution with equal volumes of well solution (22.5–35% PEG
lg Arg-C purchased
2. (a) Patch, R. J.; Brandt, B. M.; Asgari, D.; Baindur, N.; Chadha, N. K.; Georgiadis,
T.; Cheung, W. S.; Petrounia, I. P.; Donatelli, R. R.; Chaikin, M. A.; Player, M. R.
Bioorg. Med. Chem. Lett. 2007, 17, 6070; (b) Illig, C. R.; Chen, J.; Wall, M. J.;
Wilson, K. J.; Ballentine, S. K.; Rudolph, M. J.; DesJarlais, R. L.; Chen, Y.;
Schubert, C.; Petrounia, I.; Crysler, C. S.; Molloy, C. J.; Chaikin, M. A.; Manthey, C.
L.; Player, M. R.; Tomczuk, B. E.; Meegalla, S. K. Bioorg. Med. Chem. Lett. 2008, 18,
1642; (c) Meegalla, S. K.; Wall, M. J.; Chen, J.; Wilson, K. J.; Ballentine, S. K.;
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Y.; Cheng, D.; Zhou, Z.; Yurkow, E.; Manthey, C. L.; Player, M. R. J. Med. Chem.
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l
l
l
4000, 0.1 M Tris–HCL pH 8.5, 0.2 M MgCl2). Crystallographic data were
integrated and scaled using the HKL2000 software package (Ref. 11a),
refinement was carried out using programs contained within the CCP4 suite
(Ref. 11b), manual rebuilding was performed with COOT (Ref. 11c), ligands
were docket with Afitt (OpenEye Scientific), and structural figures made using
a
crystallographic R value of 21.8% (Rfree 26.5%) using all the data to 2.5 Å
resolution and CSF-1R bound to 12b was refined to a crystallographic R value of
24.7% (Rfree 28.9%) using all the data to 3.4 Å resolution.
5. (a) Schubert, C.; Schalk-Hihi, C.; Struble, G. T.; Ma, H.-C.; Petrounia, I. P.; Brandt,
B.; Deckman, I. C.; Patch, R. J.; Player, M. R.; Spurlino, J. C.; Springer, B. A. J. Biol.
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Peckham, G. E. U.S. Patent 7,491,731, 2009.
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3. HEK293 Freestyle cells transiently transfected with human CSF-1R vector
(Origene, SC116882) were suspended in DMEM supplemented with 0.1%
fetal bovine serum, 1%
L-glutamine, and 0.0405% bovine albumin (Sigma #A-
8918) at 1.7 Â 106. Thirty microlitre of the cell suspension were then
9. Ryckmans, T.; Edwards, M. P.; Horne, V. A.; Correia, A. M.; Owen, D. R.;
Thompson, L. R.; Tran, I.; Tutt, M. F.; Young, T. Bioorg. Med. Chem. Lett. 2009, 19,
4406.
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11. (a) Otwinoski, Z.; Minor, W. Methods Enzymol. 1997, 276, 307; (b) Collaborative
Computational Project, Number 4. Acta Crystallogr., Sect. D 1994, 50, 760.; (c)
Emsley, P.; Cowtan, K. Acta Crystallogr. 2004, D60, 2126.
dispensed into each well of plates containing 100 nL of compound in 100%
DMSO. After 1 h of incubation at 37 °C, cells were lysed by adding 40
2Â lysis buffer to each well and incubated for 4 min at room temperature.
Forty microlitre of lysates were then transferred to capture antibody
coated and blocked ELISA plate. c-Fms/CSF-1R(C-20) antibody (Santa Cruz,
cat.#: sc-692) was diluted to 1 g/mL in Superblock (Pierce, cat #37545),
and 50 was added to each well of goat anti-rabbit coated plates and
lL of
a
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