A R T I C L E S
D’Souza et al.
Hydrogen bonding has previously been used15-24 to assemble
benzylic amide macrocycles around various amide,16,17 ester,17,18
squaraine,19 phenolate,20 urea,21 pyridone,22 and ion-pair23
templates to generate rotaxanes and catenanes.25 Tuning of
structural rigidity and preorganization has been reported to effect
yields as high as 97% for [2]rotaxanes incorporating amide
threads.17 Although threading protocols using preformed mac-
rocycles have been successfully used in some cases,21,22,24 the
poor solubility of most benzylic amide macrocycles in the
nonpolar solvents needed to promote intercomponent hydrogen
bonding has meant that templated assembly of building blocks
about the thread to form the macrocycle is most often used to
construct such rotaxanes.15 These five-component “clipping”
Scheme 1. Hydrogen-Bonding Modes of Dipeptide and Bisnitrone
Templates for Rotaxane Synthesis
(15) (a) Kay, E. R.; Leigh, D. A. Top. Curr. Chem. 2005, 262, 133–177.
(b) Berna´, J.; Bottari, G.; Leigh, D. A.; Pe´rez, E. M. Pure Appl. Chem.
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M. D. J. Am. Chem. Soc. 1996, 118, 10662–10663. (b) Leigh, D. A.;
Murphy, A.; Smart, J. P.; Slawin, A. M. Z. Angew. Chem., Int. Ed.
Engl. 1997, 36, 728–732. (c) Lane, A. S.; Leigh, D. A.; Murphy, A.
J. Am. Chem. Soc. 1997, 119, 11092–11093. (d) Clegg, W.; Gimenez-
Saiz, C.; Leigh, D. A.; Murphy, A.; Slawin, A. M. Z.; Teat, S. J.
J. Am. Chem. Soc. 1999, 121, 4124–4129. (e) Bermudez, V.; Capron,
N.; Gase, T.; Gatti, F. G.; Kajzar, F.; Leigh, D. A.; Zerbetto, F.; Zhang,
S. Nature 2000, 406, 608–611. (f) Brouwer, A. M.; Frochot, C.; Gatti,
F. G.; Leigh, D. A.; Mottier, L.; Paolucci, F.; Roffia, S.; Wurpel,
G. W. H. Science 2001, 291, 2124–2128. (g) Biscarini, F.; Cavallini,
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W.; Peyerimhoff, S.; Baytekin, B.; Vo¨gtle, F. Chem.sEur. J. 2004,
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J. K. Y.; Zerbetto, F. Chem.sEur. J. 2004, 10, 4960–4969.
(17) Gatti, F. G.; Leigh, D. A.; Nepogodiev, S. A.; Slawin, A. M. Z.; Teat,
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(18) Fradera, X.; Marquez, M.; Smith, B. D.; Orozco, M.; Luque, F. J. J.
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reactions (Scheme 1) produce interlocked architectures because
multipoint hydrogen bonding between the open-chain precursor
1 (which in the absence of a suitable template preferentially
adopts a linear syn-anti conformation) and the thread 2
promotes a conformational change that brings the reactive end
groups close together, leading to rapid cyclization of 1 about
the axle.16a,b,i,17 The key factors determining the efficiency of
rotaxane formation in such reactions are the following:
(i) the spatial arrangement of hydrogen-bonding sites on the
thread (ideally chosen so a low-energy conformation of the
macrocycle precursor 1 can bind in a multidentate manner to
the thread, as shown in I in Scheme 1);16a,b
(ii) the rigidity of the template unit (as few as possible internal
degrees of freedom of the thread or intramolecular hydrogen
bonds should be lost upon complexation with 1 to form I).17
(iii) the efficacy of the hydrogen-bonding motifs in the thread
(e.g., amides are much more effective than esters).17
(20) Ghosh, P.; Mermagen, O.; Schalley, C. A. Chem. Commun. 2002,
2628–2629.
(21) Huang, Y. L.; Hung, W. C.; Lai, C. C.; Liu, Y. H.; Peng, S. M.; Chiu,
S. H. Angew. Chem., Int. Ed. 2007, 46, 6629–6633.
(22) Vidonne, A.; Philp, D. Tetrahedron 2008, 64, 8464–8475.
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Chem. Soc. 2002, 124, 12469–12476. (b) Sambrook, M. R.; Beer,
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Lankshear, M. D.; Ludlow, R. F.; Wisner, J. A. Org. Biomol. Chem.
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(24) (a) Hannam, J. S.; Kidd, T. J.; Leigh, D. A.; Wilson, A. J. Org. Lett.
2003, 5, 1907–1910. (b) Linnartz, P.; Bitter, S.; Schalley, C. A. Eur.
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J. Org. Chem. 2003, 4819–4829. (c) Leigh, D. A.; Morales, M. A. F.;
Pe´rez, E. M.; Wong, J. K. Y.; Saiz, C. G.; Slawin, A. M. Z.;
Carmichael, A. J.; Haddleton, D. M.; Brouwer, A. M.; Buma, W. J.;
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44, 3062–3067. (d) Onagi, H.; Rebek, J. Chem. Commun. 2005, 4604–
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Cabrera, D.; Leigh, D. A.; Slawin, A. M. Z. Angew. Chem., Int. Ed.
2006, 45, 77–83. (g) Marlin, D. S.; Gonza´lez Cabrera, D.; Leigh, D. A.;
Slawin, A. M. Z. Angew. Chem., Int. Ed. 2006, 45, 1385–1390. (h)
Chatterjee, M. N.; Kay, E. R.; Leigh, D. A. J. Am. Chem. Soc. 2006,
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H.; Li, Y. Org. Lett. 2007, 9, 3929–3932. (j) Leigh, D. A.; Thomson,
A. R. Org. Lett. 2006, 8, 5377–5379. (k) Gonza´lez Cabrera, D.;
Koivisto, B. D.; Leigh, D. A. Chem. Commun. 2007, 4218–4220. (l)
Gassensmith, J. J.; Barr, L.; Baumes, J. M.; Paek, A.; Nguyen, A.;
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The majority of neutral hydrogen-bond-accepting groups
employed in such threads to date have been amides, squaraine
(25) For examples of bisanilide macrocycle-based catenanes and rotaxanes,
see: (a) Hunter, C. A. J. Am. Chem. Soc. 1992, 114, 5303–5311. (b)
Vo¨gtle, F.; Meier, S.; Hoss, R. Angew. Chem., Int. Ed. Engl. 1992,
31, 1619–1622. (c) Ja¨ger, R.; Vo¨gtle, F. Angew. Chem., Int. Ed. Engl.
1997, 36, 930–944, and references therein. (d) Breault, G. A.; Hunter,
C. A.; Mayers, P. C. Tetrahedron 1999, 55, 5265–5293, and references
therein. (e) Blight, B. A.; Van Noortwyk, K. A.; Wisner, J. A.;
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Blight, B. A.; Wisner, J. A.; Jennings, M. C. Chem. Commun. 2006,
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