B.S. Chhikara et al. / European Journal of Medicinal Chemistry 45 (2010) 4601e4608
4605
24 h and 96 h suggests that the intracellular hydrolysis of the
prodrug to cytarabine leads to improved antiproliferative activity
after longer incubation period. Enhanced activities of 13, 18, and 19
after 96 h compared to 24 h indicate that the conjugates release
cytarabine slowly and may behave as a prodrug for sustained
delivery of the parent nucleoside. Although the anticancer activities
of these compounds were only comparable to that of cytarabine
after 96 h, their sustained release effect may be beneficial similar to
liposomal cytarabine. Furthermore, these prodrugs are expected to
have higher cellular uptake when compared to cytarabine, because
of the presence of lipophilic fatty acyl chains.
(0e10%) as the eluents to afford product 2 (178 mg, 92%). 1H NMR
(CD3OD, 400 MHz,
d
ppm): 7.71 (d, J ¼ 10 Hz, 1H, H-6), 6.20 (d,
J ¼ 5 Hz, 1H, H-10), 5.86 (d, J ¼ 10 Hz, 1H, H-5), 4.31 (dd, J ¼ 5 Hz,
J ¼ 5 Hz,1H, H-20), 4.09 (t, J ¼ 5 Hz,1H, H-30), 3.93e3.97 (m,1H, H-40),
3.85e3.92 (m, 2H, H-50), 0.96 (s, 9H, SiC(CH3)3), 0.83 (s, 9H, SiC
(CH3)3), 0.15 (s, 3H, SiCH3), 0.13 (s, 3H, SiCH3), 0.11 (s, 3H, SiCH3),
ꢁ0.05 (s, 3H, SiCH3); 13C NMR (CD3OD, 100 MHz,
d ppm): 161.93 (C-
4), 149.38 (C-2), 147.18 (C-6), 93.84 (C-5), 88.17 (C-10), 86.71 (C-40),
77.42 (C-30), 77.06 (C-20), 63.01 (C-50), 26.65, 26.38 (2 ꢀ SiC(CH3)3),
19.16, 18.97 (2 ꢀ SiC(CH3)3), ꢁ4.07, ꢁ4.41, ꢁ5.08, ꢁ5.13 (2 ꢀ Si
(CH3)2); HR-MS (ESI-TOF) (m/z): calcd for C21H41N3O5Si2: 471.2585;
found, 472.2620 [M þ 1]þ, 943.5228 [2M þ 1]þ.
3. Conclusions
4.2.2. 1-[30,50-Di(O-tert-butyldimethylsilyl)-N-(4,40-
Three classes of fatty acyl derivatives of cytarabine were
synthesized as fatty acyl prodrugs and evaluated for the inhibition
of CCRF-CEM cell proliferation. The data indicate that designing
molecules with comparable anti-leukemia activity to cytarabine
with sustained release effect is possible by structure modification.
A number of compounds may have potential application for slow
delivery of cytarabine. Further optimization is required to generate
lead compounds with improved cell proliferation inhibition versus
cytarabine.
dimethoxytrityl)-b-D-arabinofuranosyl]cytosine (3)
Compound 2 (170 mg, 0.36 mmol) was dissolved in dry pyridine
(5 mL). To the solution was added 4,40-dimethoxytrityl chloride
(DMTr-Cl, 166 mg, 0.49 mmol) dissolved in dry pyridine (10 mL)
dropwise at 0 ꢂC. The mixture was stirred for 4 h at 0 ꢂC and then for
an additional 14 h at room temperature. The solution was then
neutralized with aqueous sodium bicarbonate (5.0%) and extracted
with dichloromethane (3 ꢀ 50 mL). The organic layer was dried
with anhydrous sodium sulfate, and the solvent was removed
under reduced pressure. The crude compound was purified by
column chromatography over silica gel using hexane/dichloro-
methane containing 1.0% triethylamine as the eluents to yield 3
4. Experimental protocols
4.1. Materials and methods
(240 mg, 86%). 1H NMR (CDCl3, 500 MHz,
d
ppm): 7.82 (d, J ¼ 7.7 Hz,
1H, H-6), 7.40e7.53 (m, 5H, DMTr-Ar-H), 7.32 (br s, 2H, DMTr-Ar0-
C2-H), 7.31 (br s, 2H, DMTr-Ar0-C6-H), 7.01 (br s, 2H, DMTr Ar’-C5-
H), 7.00 (s, 2H, DMTr Ar’-C3-H), 6.28 (d, J ¼ 4.7 Hz,1H, H-10), 5.21 (d,
J ¼ 7.7 Hz, 1H, H-5), 4.46e4.53 (m, 1H, H-20), 4.27e4.32 (m, 1H, H-
30), 4.04e4.08 (m, 2H, H-50), 3.90 (s, 6H, 2 ꢀ OCH3), 3.86e3.92 (m,
1H, H-40), 1.07 (s, 9H, SiC(CH3)3), 0.97 (s, 9H, SiC(CH3)3), 0.31 (s, 3H,
Cytarabine, HBTU, HOBt, anhydrous dichloromethane, anhy-
drous pyridine, N,N-dimethylformamide (DMF) and other chem-
icals and reagents were purchased from SigmaeAldrich Chemical
Co. (Milwaukee, WI). 12-Thioethyldodecanoic acid was synthesized
from 12-bromododecanoic acid and thioethanol as described
previously [33]. HBTU and HOBt in N,N-dimethylformamide (DMF)
were used as coupling and activating reagents, respectively. The
chemical structures of final products were characterized by nuclear
magnetic resonance spectra (1H NMR, 13C NMR) determined on
a Bruker NMR spectrometer (400 MHz) or a Varian NMR spec-
trometer (500 MHz). 13C NMR spectra are fully decoupled. Chemical
shifts were reported in parts per million (ppm) using deuterated
solvent peak as the standard. The chemical structures of final
products were confirmed by a high-resolution Biosystems QStar
Elite time-of-flight electrospray mass spectrometer. Details of
procedures and spectroscopic data of the respective compounds are
presented below. Final compounds were purified on a Phenomenex
SiCH3), 0.27 (s, 3H, SiCH3), 0.20 (s, 3H, SiCH3), 0.17 (s, 3H, SiCH3); 13
NMR (CDCl3, 125 MHz, ppm): 165.63 (C-4), 158.80 (DMTr Ar-C4-
C
d
O), 156.22 (C-2), 144.73 (DMTr-C1-Ar), 142.04 (C-6), 136.44 (DMTr-
C1-Ar0-OCH3), 130.24, 130.13, 128.75, 128.41, 127.90, 127.52, 113.68
(DMTr-Ar carbons), 94.24 (C-5), 87.29 (C-10), 84.64 (C-40), 78.33 (C-
30), 75.86 (C-20), 70.43 (DMTr C-Ar3), 62.07 (C-50), 55.38 (DMTr Ar-
O-CH3), 26.03, 25.92 (TBDMS 2 ꢀ SiC(CH3)3), 18.37, 18.14 (TBDMS
2 ꢀ SiC(CH3)3), ꢁ4.16, ꢁ4.92, ꢁ5.47, ꢁ5.48 (TBDMS 4 ꢀ SiCH3); HR-
MS (ESI-TOF) (m/z): calcd for C42H59N3O7Si2: 773.3892; found,
774.0265 [M þ 1]þ.
4.2.3. 1-[30-O-(tert-Butyldimethylsilyl)-N-(4,40-dimethoxytrityl)-
-arabinofuranosyl]cytosine (4)
Compound 3 (200 mg, 0.26 mmol) was treated with 0.1 M
b-
Prodigy 10
m
m ODS reversed-phase column (2.1 cm ꢀ 25 cm) with
D
a Hitachi HPLC system using a gradient system of acetonitrile or
methanol and water (CH3CN/CH3OH/H2O, 0ꢁ100%, pH 7.0, 60 min).
The purity of final products (>99%) was confirmed by analytical
HPLC. The analytical HPLC was performed on the Hitachi analytical
solution of potassium hydroxide in ethanol (20 mL). The mixture
was stirred for 1 h at room temperature. After completion of
reaction, the solution was neutralized with 0.01% acetic acid in
ethanol to pH 7 at 0 ꢂC. The solvent was evaporated under
reduced pressure and the crude sticky product was purified on
column chromatography over silica gel using dichloromethane/
methanol containing 1.0% triethylamine as the eluents to yield 4
HPLC system using a C18 Shimadzu Premier 3
mm column
(150 cm ꢀ 4.6 mm) using two different isocratic systems, and a flow
rate of 1 mL/min with a UV detection at 265 nm.
4.2. Chemistry
(152 mg, 89%). 1H NMR (CD3OD, 400 MHz,
d ppm): 7.58 (d,
J ¼ 8.0 Hz, 1H, H-6), 7.25e7.40 (m, 5H, DMTr-Ar-H), 7.17 (br s, 4H,
DMTr-Ar0-C2-H, DMTr-Ar0-C6-H), 6.88 (br s, 4H, DMTr Ar’-C3-H,
DMTr Ar’-C5-H), 6.05e6.20 (m, 1H, H-10), 5.22 (d, J ¼ 8.0 Hz, 1H,
H-5), 4.08e4.13 (m, 2H, H-20, H-30), 3.81e3.83 (m, 1H, H-40), 3.79
(s, 6H, 2 ꢀ OCH3), 3.69e3.75 (m, 2H, H-50), 0.93 (s, 9H, SiC
4.2.1. 1-[30,50-Di(O-tert-butyldimethylsilyl)-
b-D-arabinofuranosyl]
cytosine (2)
tert-Butyldimethylsilyl chloride (TBDMS-Cl) (247 mg,1.64 mmol)
and imidazole (112 mg, 1.64 mmol) were added to a solution of
cytarabine (100 mg, 0.41 mmol) in dry DMF (20.0 mL). The reaction
mixture was stirred at room temperature for 14 h. After the
completion of the reaction, the solvent was removed under reduced
pressure, and the crude compound was purified by column
chromatography over silica gel using dichloromethane/methanol
(CH3)3), 0.13 (s, 6H, Si(CH3)2); 13C NMR (CD3OD, 100 MHz,
d,
ppm): 165.9 (C-4), 158.96, 158.68 (DMTr Ar-C4-O), 156.21 (C-2),
144.57 (DMTr-C1-Ar), 142.92 (C-6), 136.16, 136.07 (DMTr-C1-Ar-
OCH3), 130.13, 129.88, 129.79, 128.41, 127.93, 127.11, 113.19,
112.61, 112.37 (DMTr-Ar carbons), 94.42 (C-5), 87.23 (C-10), 86.21