2-Methyleneamino-but-2-enoic acid [2-[2-(1H-imidazol-4-yl)-
ethylcarbamoyl]-1-(2-nitro-phenyl)-ethyl]-amide (Imcage)
18 h. NMM (0.089 mL, 0.813 mmol) and di-(2-picolyl)amine
(0.015 mL, 0.081 mmol), both in CH2Cl2 (3 mL) were added to
the reaction mixture. PyBOP (0.042 g, 0.081 mmol) in CH2Cl2
(2 mL) was then added, and the reaction mixture stirred for 18 h
at room temperature. The solvent was removed and resulting oil
was purified by HPLC, giving a yellow oil (0.036 g, 44%). 1H NMR
(CD3OD): d 8.76 (dd, J = 10.9, J = 5.2, 2H), 8.66 (d, J = 4.5, 1H),
8.37 (dd, J = 11.1, J = 4.6, 1H), 8.07–7.88 (m, 5H), 7.81 (dd, J =
13.8, J = 7.3, 1H), 7.62–7.53 (m, 5H), 7.53–7.47 (m, 1H), 5.92 (dd,
J = 7.8, J = 4.5, 1H), 5.17 (dd, J = 55.6, J = 18.2, 2H), 5.06–4.96 (m,
2H), 3.39–3.36 (m, 1H), 3.14–3.08 (m, 1H). 13C NMR (CD3OD):
d 172.33, 164.49, 155.59, 154.92, 148.41, 147.69, 145.05, 141.74,
139.79, 137.57, 136.48, 133.32, 128.61, 128.43, 126.74, 125.61,
124.87, 124.47, 123.86, 123.02, 121.87, 53.23, 51.14, 37.34; m/z
(EI) 497.1 [M+H]+, C27H25N6O4 requires 497.19.
Equimolar quantities of picolinic acid (0.100 g, 0.813 mmol) and
NMM (0.089 mL, 0.813 mmol) in CH2Cl2 (3 mL) were added to a
50-mL round-bottom flask equipped with a stir bar. Then PyBOP
(0.423 g, 0.813 mmol) in CH2Cl2 (2 mL) was added and the reaction
mixture was allowed to stir for 18 h at room temperature. After
18 h, one equivalent of 3-amino-3-(2-nitrophenyl)propionic acid
(0.171 g, 0.813 mmol) dissolved in hot DMF (15 mL) was added
and the reaction mixture was stirred for an additional 18 h. NMM
(0.089 mL, 0.813 mmol) and histamine (0.091 g, 0.815 mmol),
both in CH2Cl2 (3 mL) were added to the reaction mixture. PyBOP
(0.423 g, 0.815 mmol) in CH2Cl2 (2 mL) was then added, and the
reaction mixture stirred for 18 h at room temperature. The solvent
was removed and the resulting oil was purified by HPLC, giving a
yellow oil (0.053 g, 16%). 1H NMR ((CD3)2CO): d 9.86 (1H, d, J =
7.49), 8.73 (1H, s), 8.67 (1H, d, J = 4.33), 8.00 (1H, d, J = 7.58),
7.95 (2H, d, J = 7.42), 7.78 (1H, d, J = 7.86), 7.65 (1H, t, J = 7.60,
J = 7.60), 7.57 (1H, m), 7.50 (1H, t, J = 7.74, J = 7.74), 7.32 (1H,
s), 5.96 (1H, m), 3.52 (2H, t, J = 6.41, J = 6.41), 3.06 (1H, dd, J =
6.88, J = 14.87), 2.93 (3H, m). 13C NMR ((CD3)2CO): d: 170.40,
163.59, 149.82, 148.62, 137.55, 137.47, 133.58, 133.43, 131.78,
128.93, 128.43, 126.62, 124.35, 121.97, 116.36, 46.89, 39.89, 37.99,
24.52; m/z (EI) 409.2 [M+H]+, C20H21N6O4 requires 409.16.
3-[2-(Bis-pyridin-2-ylmethyl-amino)-acetylamino]-3-(2-nitro-
phenyl)-N-pyridin-2-ylmethyl-propionamide (3arm-1)
Amcage (0.029 g, 0.081 mmol), bromoacetic acid (0.013 mL,
0.178 mmol) and K2CO3 (0.045 g, 0.324 mmol) in DMF (10 mL)
were combined in a 50-mL round-bottom flask equipped with a
stir bar and the reaction mixture was allowed to stir for 18 h at
room temperature. The solvent was removed and the resulting oil
was taken up in CH2Cl2 (20 mL) and washed with H2O (4 ¥ 10 mL).
The organic layers were combined, the solvent was removed and
the resulting oil was purified by HPLC, giving a yellow oil (0.022 g,
49.6%). Analysis by LC-MS and 1H NMR showed ≥ 98% purity.
1H NMR ((CD3OD): d 8.76–8.71 (m, 3H), 8.67–8.65 (m, 1H),
8.59–8.54 (m, 1H), 8.26–8.22 (m, 1H), 8.18 (td, J = 7.8, J = 1.6,
2H), 8.12–8.07 (m, 1H), 8.02 (d, J = 8.0, 1H), 7.95 (dd, J = 9.0, J =
7.7, 2H), 7.73–7.60 (m, 8H), 7.53 (ddd, J = 15.5, J = 7.1, J = 1.4,
2H), 5.82 (t, J = 6.8, 1H), 5.03 (s, 2H), 4.60 (d, J = 5.9, 2H), 4.27
(s, 2H), 3.60 (d, J = 7.3, 2H), 2.96 (d, J = 6.9, 2H). m/z (HR-FAB)
540.2366 [M+H]+,C29H30N7O4 requires 540.2359.
7,14-Bis-(2-nitro-phenyl)-1,4,8,11tetraaza-cyclotetradecane-
2,5,9,12-tetraone (Macrocage)
Macrocage was synthesized on a Protein Technologies PS3
automated peptide synthesizer using Fmoc-Gly-Wang resin (Ad-
vanced ChemTech) (0.048 g, 0.033 mmol). Fmoc was removed
using 20% piperdine in DMF. Couplings of Fmoc-3-amino-3-(2-
nitrophenyl)propionic acid (0.028 g, 0.066 mmol) and Fmoc-Gly
(0.029 g, 0.099 mmol) were carried out using O-benzotriazole-
N,N,N¢,N¢-tetramethyl-uronium-hexafluoro-phosphate (HBTU)
(0.038 g, 0.099 mmol) and NMM (5 mL, 0.045 mmol) in DMF
(10 mL) for 30 min. The uncyclized peptide was obtained by
treating the resin-bound molecule with a 95% trifluoroacetic acid
(TFA) solution for 2 h. TFA was removed and the resulting oil
was washed (3 ¥ 5 mL) with diethyl ether. The resulting oil and
NMM (5 mL, 0.045 mmol) in DMF (200 mL) were added to a
500-mL round-bottom flask equipped with a stir bar. Then HBTU
(0.038 g, 0.099 mmol) in DMF (5 mL) was added and the reaction
mixture was allowed to stir for 18 h at 100 ◦C. Solvent removal gave
an oil that was purified by HPLC, giving a white solid (0.003 g,
16.4%). Analysis by LC-MS and HR-FAB showed > 98% purity.
m/z (HR-FAB) 499.1578 [M+H]+, C22H23N6O8 requires 499.1577.
Pyridine-2-carboxylic acid {1-(2-nitro-phenyl)-3-[(pyridin-2-
ylmethyl)-amino]-propyl}-amide (3Gcage)
Equimolar quantities of picolinic acid (0.05 g, 0.40 mmol) and
NMM (0.04 mL, 0.40 mmol) in CH2Cl2 (2 mL) were added
to a 25-mL round-bottom flask equipped with a stir bar. The
reaction mixture was cooled over an ice bath for ten min then
PyBOP (0.21 g, 0.40 mmol) in CH2Cl2 (2 mL) was added. The
reaction mixture was allowed to warm to room temperature with
stirring for 18 h. After 18 h, one equivalent of 3-amino-3-(2-
nitrophenyl)propionic acid (0.08 g, 0.40 mmol) dissolved in hot
DMF (5 mL) was added and the reaction mixture was stirred
for an additional 18 h. NMM (0.04 mL, 0.40 mmol) and PyBOP
(0.21 g, 0.40 mmol), both in CH2Cl2 (2 mL) were added to the
reaction mixture. The resulting solution was cooled over an ice
bath for ten min then the reaction mixture stirred for 18 h at room
temperature. The reaction mixture was again cooled over an ice
bath for 30 min then NaBH4 (1.51 g, 4.0 mmol) was added. The
reaction mixture was allowed to warm to room temperature and
continued stirring for 10 min. The solvent was removed and the
resulting oil was taken up in CH2Cl2 (15 mL) and washed with
saturated sodium bicarbonate (3 ¥ 10 mL). The organic layers
were combined, dried over MgSO4, filtered, and solvent removal
Pyridine-2-carboxylic acid [2-(bis-pyridin-2-ylmethyl-
carbamoyl)-1-(2-nitro-phenyl)-ethyl]-amide (3 arm-3)
Equimolar quantities of picolinic acid (0.010 g, 0.081 mmol) and
NMM (0.009 mL, 0.081 mmol) in CH2Cl2 (3 mL) were added to a
50-mL round-bottom flask equipped with a stir bar. Then PyBOP
(0.042 g, 0.0813 mmol) in CH2Cl2 (2 mL) was added and the
reaction mixture was allowed to stir for 18 h at room temperature.
After 18 h, one equivalent of 3-amino-3-(2-nitrophenyl)propionic
acid (0.017 g, 0.081 mmol) dissolved in hot DMF (15 mL) was
added and the reaction mixture was stirred for an additional
9540 | Dalton Trans., 2010, 39, 9538–9546
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The Royal Society of Chemistry 2010
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