L. R. Marcin et al. / Bioorg. Med. Chem. Lett. 21 (2011) 537–541
541
Table 4
Comparison of BACE-1 enzyme inhibition, cellular Ab activity, and off-target enzyme inhibition for compounds 1b, 6i, 10a, and 10n
a
a
a
Compound
BACE-1 IC50 (nM)
BACE-2 IC50 (nM)
HEK-Sw Ab IC50 (nM)
Cathepsin D IC50 (nM)
Cathepsin E IC50 (nM)
Pepsin IC50 (nM)
c log P
1b
6i
10a
10n
17
16
33
10
230
43
49
31
250
89
2800
170
1900
1500
130
710
380
150
320
4.8
5.9
5.0
4.0
800
26
11,000
4000
1000
a
Values are means of P2 experiments.
16. Iserloh, U.; Pan, J.; Stamford, A. W.; Kennedy, M. E.; Zhang, Q.; Zhang, L.; Parker,
E. M.; McHugh, N. A.; Favreau, L.; Strickland, C.; Voigt, J. Bioorg. Med. Chem. Lett.
2008, 18, 418.
17. Kortum, S. W.; Benson, T. E.; Bienkowski, M. J.; Emmons, T. L.; Prince, D. B.;
Paddock, D. J.; Tomasselli, A. G.; Moon, J. B.; LaBorde, A.; TenBrink, R. E. Bioorg.
Med. Chem. Lett. 2007, 17, 3378.
18. Stanton, M. G.; Stauffer, S. R.; Gregro, A. R.; Steinbeiser, M.; Nantermet, P.;
Sankaranarayanan, S.; Price, E. A.; Wu, G.; Crouthamel, M.-C.; Ellis, J.; Lai, M.-T.;
Espeseth, A. S.; Shi, X.-P.; Jin, L.; Colussi, D.; Pietrak, B.; Huang, Q.; Xu, M.;
Simon, A. J.; Graham, S. L.; Vacca, J. P.; Selnick, H. J. Med. Chem. 2007, 50, 3431.
19. 1-Alkyl-3-carboxamidoindole HEAs, have been disclosed in the patent
literature, but supporting biological data is absent, see: John, V.; Maillard,
M.; Jagodzinska, B.; Beck, J. P.; Gailunas, A.; Fang, L.; Sealy, J.; Tenbrink, R.;
Freskos, J.; Mickelson, J.; Samala, L.; Hom, R. PCT Int. Appl. WO 2003040096.
20. Freskos, J. N.; Fobian, Y. M.; Benson, T. E.; Bienkowski, M. J.; Brown, D. L.;
Emmons, T. L.; Heintz, R.; Laborde, A.; McDonald, J. J.; Mischke, B. V.;
Molyneaux, J. M.; Moon, J. B.; Mullins, P. B.; Prince, D. B.; Paddock, D. J.;
Tomasselli, A. G.; Winterrowd, G. Bioorg. Med. Chem. Lett. 2007, 17, 73.
21. Grzyb, J. A.; Shen, M.; Yoshina-Ishii, C.; Chi, W.; Brown, R. S.; Batey, R. A.
Tetrahedron 2005, 61, 7153.
Azaindole HEA 10n was examined for its ability to decrease Ab
production in wild type rats. Animals were dosed with a single
intraperitoneal injection of 10n at 30 mpk.35 Plasma and brain sam-
ples were harvested and analyzed for drug exposure and Ab40 lev-
els. Compound 10n demonstrated robust reductions of 51 28%
and 37 16% in plasma Ab at 1.5 and 5 h post injection, respectively.
However, no reduction in brain Ab was observed when the animals
were euthanized at 5 h. The drug achieved robust peripheral expo-
sure ([drug]plasma = 4200 nM @ t = 1.5 h; 2900 nM @ t = 5 h), but
very poor brain exposure ([drug]brain = 57 nM @ t = 5 h). These find-
ings were commensurate with bidirectional Caco-2 permeability
assay results (Papp A–B <15 nm/s; Papp B–A = 184 nm/s), which pre-
dicted a B–A/A–B efflux ratio of >12.36,37 Thus, brain exposure of
10m was likely limited by P-glycoprotein efflux at the blood–brain
barrier.
In conclusion, heterocyclic replacement of the isophthalamide
aryl ring in HEA BACE-1 inhibitors was well tolerated. 7-Azain-
dole-1,3-dicarboxamides with an alkyl ether P3 side chain demon-
strated the best combination of BACE-1 enzyme inhibition and Ab
cellular potency. Azaindole HEA 10n did not achieve sufficient CNS
exposure to effect reductions in brain Ab after a single acute dose.
Exposure data and in vitro permeability studies suggested that the
brain exposure of 10n was probably limited by transporter efflux
at the BBB. Consequently, it does not appear likely that heterocyclic
replacement of the phenyl ring in isophthalamide-derived HEA
BACE-1 inhibitors is a viable strategy to improve CNS exposure
and achieve significant brain Ab reductions.38
22. BACE-1 enzyme activity was determined by the increase in fluorescence
resulting from the cleavage of 7-methoxycoumarin-4-acetyl-EVNLDAEF(K-
dnp)-COOH as described in: Marcinkeviciene, J.; Luo, Y.; Graciani, N. R.; Combs,
A. P.; Copeland, R. A. J. Biol. Chem. 2001, 276, 23790.
23. The cellular HEK-Sw assay was performed as described in Ref. 7.
24. Co-crystals of BACE-1 and a peptidic statine25 were soaked with 1 mM 6c or 6n
in a stabilizing buffer of 35% PEG8 K, 0.2 M ammonium sulfate, 0.1 M sodium
cacodylate pH 6.2 for 25 or 8 days, respectively.
25. Kornacker, M. G.; Copeland, R. A.; Hendrick, J. P.; Lai, Z.; Mapelli, C.; Witmer, M.
R.; Marcinkeviciene, J.; Metzler, W. J.; Lee, V. G.; Riexinger, D. J.; Muckelbauer, J.
K.; Chang, C. J.; Camac, D. M.; Morin, P. E. U.S. Patent Application Publication
2007149763.
26. Coordinates for the complex of BACE-1 with inhibitor 6c have been deposited
27. Patel, S.; Vuillard, L.; Cleasby, A.; Murray, C. W.; Yon, J. J. Mol. Biol. 2004, 343,
407.
28. Coordinates for the complex of BACE-1 with inhibitor 6n have been deposited
References and notes
29. Poor chemical and metabolic stability of
9 cautioned against detailed
interpretation of the assay results and precluded the exploration of
additional analogs belonging to this chemotype.
1. Alzheimer’s Association: 2009 Alzheimer’s Disease Facts and Figures.
2. Alzheimer’s Disease International: World Alzheimer Report 2009.
3. Querfurth, H. W.; LaFerla, F. M. N. Eng. J. Med. 2010, 362, 329.
4. Findeis, M. A. Pharmacol. Ther. 2007, 116, 266.
5. Citron, M. Nat. Rev. Drug Disc. 2010, 9, 387.
6. Gillman, K. W.; Starrett, J. E.; Parker, M. F.; Xie, K.; Bronson, J. J.; Marcin, L. R.;
McElhone, K. E.; Bergstrom, C. P.; Mate, R. A.; Williams, R.; Meredith, J. E.;
Burton, C. R.; Barten, D. M.; Toyn, J. H.; Roberts, S. B.; Lentz, K. A.; Houston, J. G.;
Zaczek, R.; Albright, C. F.; Decicco, C. P.; Macor, J. E.; Olson, R. E. ACS Med. Chem.
Lett. 2010, 1, 120.
7. Meredith, J. E., Jr.; Thompson, L. A.; Toyn, J. H.; Marcin, L.; Barten, D. M.;
Marcinkeviciene, J.; Kopcho, L.; Kim, Y.; Lin, A.; Guss, V.; Burton, C.; Iben, L.;
Polson, C.; Cantone, J.; Ford, M.; Drexler, D.; Fiedler, T.; Lentz, K. A.; Grace, J. E.,
Jr.; Kolb, J.; Corsa, J.; Pierdomenico, M.; Jones, K.; Olson, R. E.; Macor, J. E.;
Albright, C. F. J. Pharmacol. Exp. Ther. 2008, 326, 502.
8. Wu, Y.-J.; Zhang, Y.; Good, A. C.; Burton, C. R.; Toyn, J. H.; Albright, C. F.; Macor,
J. E.; Thompson, L. A. Bioorg. Med. Chem. Lett. 2009, 19, 2654.
9. Hong, L.; Koelsch, G.; Lin, X.; Wu, S.; Terzyan, S.; Ghosh, A. K.; Zhang, X. C.;
Tang, J. Science 2000, 290, 150.
10. Maillard, M.; Hom, R.; Gailunas, A.; Jagodzinska, B.; Fang, L. Y.; John, V.;
Freskos, J. N.; Pulley, S. R.; Beck, J. P.; Tenbrink, R. E. PCT Int. Appl. WO
2002002512.
30. Robison, M. M.; Robison, B. L. J. Am. Chem. Soc. 1955, 77, 457.
31. The BACE-1 activity of 10h was in marked contrast to the good potency
reported with isophthalamides bearing a cyclopropyl P20 substituent: Stachel,
S. J.; Coburn, C. A.; Steele, T. G.; Jones, K. G.; Loutzenhiser, E. F.; Gregro, A. R.;
Rajapakse, H. A.; Lai, M.-T.; Crouthamel, M.-C.; Xu, M.; Tugusheva, K.;
Lineberger, J. E.; Pietrak, B. L.; Espeseth, A. S.; Shi, X.-P.; Chen-Dodson, E.;
Holloway, M. K.; Munshi, S.; Simon, A. J.; Kuo, L.; Vacca, J. P. J. Med. Chem. 2004,
47, 6447.
32. Analytical data for compd 10n: 1H NMR (DMSO-d6, 400 MHz) d 1.78–1.91 (3H,
m), 2.09 (1H, m), 2.57–2.62 (1H, m), 2.69–2.72 (1H, m), 2.80 (1H, dd, J = 12,
16 Hz), 3.10 (1H, m), 3.26–3.51 (3H, m), 3.57–3.63 (3H, m), 3.69 (4H, s), 3.73
(2H, s), 4.20 (1H, m), 4.27 (1H, s), 5.12 (1H, br s), 6.75 (1H, d, J = 8 Hz), 6.88–
6.98 (5H, m), 7.15 (1H, t, J = 8 Hz), 7.28 (1H, dd, J = 4, 8 Hz), 8.09 (1H, d,
J = 8 Hz), 8.35–8.41 (3H, m). MS (ESI) (M+H)+ 622.16.
33. Enzyme assays for BACE-2, cathepsin D, cathepsin
E and pepsin were
conducted as previously described: Iben, L. G.; Kopcho, L.; Marcinkeviciene,
J.; Zheng, C.; Thompson, L. A.; Albright, C. F.; Toyn, J. H. Eur. J. Pharmacol. 2008,
593, 10.
34. c log P values were calculated using the chemical properties predictor in
ChemDraw Ultra 9.0.5 by Cambridgesoft.
35. Female CDÒ IGS rats (7–9 weeks old; n = 2). Sandwich ELISA for rodent Ab1-40
was used as described in Ref. 7. Ab 40 levels are expressed as a percentage of
vehicle control with SEM.
36. Artursson, P.; Palm, K.; Luthman, K. Adv. Drug Delivery Rev. 2001, 46, 27.
37. Balimane, P. V.; Han, Y.-H.; Chong, S. AAPS J. 2006, 8, E1.
38. A recent communication has reported in vivo activity of HEA BACE-1 inhibitors
with reduced P-gp susceptibility: Lerchner, A.; Machauer, R.; Betschart, C.;
Veenstra, S.; Rueeger, H.; McCarthy, C.; Tintelnot-Blomley, M.; Jaton, A.-L.;
Rabe, S.; Desrayaud, S.; Enz, A.; Staufenbiel, M.; Paganetti, P.; Rondeau, J.-M.;
Neumann, U. Bioorg. Med. Chem. Lett. 2010, 20, 603.
11. Ghosh, A. K.; Gemma, S.; Tang, J. Neurotherapeutics 2008, 5, 399.
12. Hamada, Y.; Kiso, Y. Expert Opin. Drug Discovery 2009, 4, 391.
13. Stachel, S. J. Drug Dev. Res. 2009, 70, 101.
14. Cumming, J.; Babu, S.; Huang, Y.; Carrol, C.; Chen, X.; Favreau, L.; Greenlee, W.;
Guo, T.; Kennedy, M.; Kuvelkar, R.; Le, T.; Li, G.; McHugh, N.; Orth, P.; Ozgur, L.;
Parker, E.; Saionz, K.; Stamford, A.; Strickland, C.; Tadesse, D.; Voigt, J.; Zhang,
L.; Zhang, Q. Bioorg. Med. Chem. Lett. 2010, 20, 2837.
15. Hussain, I.; Hawkins, J.; Harrison, D.; Hille, C.; Wayne, G.; Cutler, L.; Buck, T.;
Walter, D.; Demont, E.; Howes, C.; Naylor, A.; Jeffrey, P.; Gonzalez, M. I.;
Dingwall, C.; Michel, A.; Redshaw, S.; Davis, J. B. J. Neurochem. 2007, 100, 802.