Potent and Orally Bioavailable Thrombin Inhibitors
J ournal of Medicinal Chemistry, 1997, Vol. 40, No. 22 3693
TFA‚0.45H2O: C (51.16 calcd, 51.14 obsd), H (5.18 calcd, 5.02
obsd), N (7.37 calcd, 7.33 obsd). High-resolution FAB MS: M+
calcd ) 435.27600, obsd ) 435.27479. 400 MHz 1H NMR
(CDCl3): 0.95 (m, 2H), 1.41 (m, 2H), 1.79 (m, 4H), 2.10 (m,
4H), 2.96 (m, 2H), 3.11 (m, 2H), 3.43 (q, 1H), 3.61 (m, 1H),
3.79 (m, 1H), 3.80-4.30 (br, 2H, NH2), 4.30 (m, 1H), 4.48 (m,
1H), 4.75 (m, 1H), 7.01 (t, 1H), 7.29 (complex, 5H), 7.58 (br m,
2H), 8.61 (br m, 2H).
17: Glassy amorphous solid, yield ) 30%. High-resolution
FAB MS: M+ calcd ) 435.27600, obsd ) 435.27405. Elemen-
tal Anal. for C26H34N4O2‚2.50TFA‚1.00H2O: C (50.47 calcd,
5047 obsd), H (5.26 calcd, 5.06 obsd), N (7.60 calcd, 7.68 obsd).
1
400 MHz H NMR (CDCl3): 0.85 (m, 2H), 1.31 (m, 3H), 1.64
(t, 2H), 1.96 (t, 2H), 12.92 (m, 2H), 3.04 (m, 2H), 3.31 (m, 1H),
3.39 (m, 1H), 4.40 (m, 1H), 4.78 (br t, 1H), 7.21 (complex, 5H),
7.61 (br, 1H), 8.02 (d, 1H), 8.21 (m, 1H), 8.63 (m, 1H), 8.78 (d,
1H).
The later eluting peak fractions were combined and treated
as above to give 25 mg (12%) of compound 19 as a glassy solid.
Elemental Anal. for C26H34N4O2‚2.50TFA‚2.40H2O: C (48.80
calcd, 48.79 obsd), H (5.46 calcd, 5.22 obsd), N (7.34 calcd, 7.48
obsd). High-resolution FAB MS: M+ calcd ) 435.27600, obsd
N-[1-Oxo-3-(3-p yr idyl)-3-[3,4-(m eth ylen ed ioxy)p h en yl]-
p r op yl]-L-p r olin e [tr a n s-(4-Am in ocycloh exyl)m et h yl]-
a m id e (Dia ster eom er s 20 a n d 21). 20: White amorphous
lyophilizate, yield ) 26%. FAB MS: M+ 1 ) 479. Elemental
Anal. for C27H34N4O4‚2.50 TFA‚2.50H2O: C (calcd 47.62, obsd
47.65), H (calcd 5.19, obsd 4.90), N (calcd 6.95, obsd 7.20). 400
MHz 1H NMR (CD3OD): 1.02 (m, 2H), 1.36 (m, 4H), 1.89-
2.14 (complex, 8H), 3.01 (m, 2H), 3.16 (m, 1H), 3.31 (m, 1H),
3.64 (m, 2H), 4.26 (m, 1H), 4.21 (m, 1H), 5.96 (s, 2H), 6.91
(complex, 3H), 7.90 (m, 2H), 8.42 (d, 1H), 8.70 (s, 1H).
1
) 435.27657. 400 MHz H NMR (CDCl3): 0.91 (m, 2H), 1.31
(m, 2H), 1.71 (d, 2H), 1.91 (m, 2H), 2.11 (m, 4H), 2.92 (m, 2H),
3.04 (m, 2H), 3.32 (m, H), 3.39 (m, 1H), 3.69 (m, 1H), 380-
4.30 (br, 2H) 4.09 (br m, 1H), 4.39 (m, 1H), 4.74 (br m, 1H),
7.29 (complex, 6H), 8.21 (br d, 2H), 8.61 (br m, 2H). Both
diastereomers were of >99% purity by HPLC Anal. at 210 and
254 nm.
21: White amorphous lyophilizate, yield ) 30%. FAB MS:
M+ 1 ) 479. Elemental Anal. for C27H34N4O4‚2.50 TFA‚
2.50H2O: C (calcd 47.67, obsd 47.55), H (calcd 5.19, obsd 4.97),
The following compounds were prepared in the same man-
ner as compounds 18 and 19.
N-(1-Oxo-3-ph en yl-3-cycloh exylpr opyl)-L-pr olin e [tr a n s-
(4-Am in ocycloh exyl)m eth yl]a m id e (Dia ster eom er s 9 a n d
10). 9: White solid, mp ) 116-119 °C, yield ) 39%. High-
resolution FAB MS: M+ calcd ) 440.32770, obsd ) 440.32599.
Elemental Anal. for C27H41N3O2‚1.25 TFA‚0.80H2O: C (calcd
59.39, obsd 59.32), H (calcd 7.41, obsd 7.47), N (calcd 7.04, obsd
1
N (calcd 6.95, obsd 7.00). 400 MHz H NMR (CD3OD): 0.89
(m, 2H), 1.18 (m, 2H), 1.29 (m, 2H), 1.62-1.98 (complex, 5H),
2.08 (m, 1H), 2.89 (m, 2H), 3.14 (m, 7H), 3.42 (m, 1H), 3.59
(m, 1H), 4.17 (m, 1H), 4.63 (m, 1H), 5.82 (s, 2H), 6.74 (complex,
3H), 7.78 (t, 1H), 8.34 (d, 1H), 8.55 (d, 1H), 8.63 (s, 1H).
1
7.40). 400 MHz H NMR: 0.85 (m, 2H), 0.95 (q, 1H), 1.09 (m,
Ack n ow led gm en t. The authors thank Dr. Graham
Smith, Ms. Patrice Ciecko, Mr. Ken Anderson, and Mr.
Matt Zrada for elemental analyses and log P determina-
tions. The authors also thank Dr. Harri Ramjit and Dr.
Art Coddington for mass spectroscopy data. The authors
also thank Dr. J oel Huff and Dr. J ules Shafer for their
support and encouragement and Ms. J ean Kaysen for
manuscript preparation.
2H), 1.29 (m, 6H), 1.45 (m, 1H), 1.78 (m, 1H), 1.87 (m, 6H),
2.01 (m, 2H), 2.07 (m, 1H), 2.72 (m, 4H), 2.80 (m, 1H), 2.95
(m, 2H), 3.42 (m, 2H), 4.41 (t, 1H), 6.22 (t, 1H), 7.19 (complex,
5H), 7.78 (br, NH2).
10: White solid, mp ) 120-122 °C, yield ) 66%, High-
resolution FAB MS: M+ calcd ) 440.32770, obsd ) 440.32799.
Elemental Anal. for C27H41N3O2‚1.25TFA‚0.65H2O: C (calcd
59.66, obsd 59.61), H (calcd 7.39, obsd 7.36), N (calcd 7.08, obsd
7.23). 400 MHz 1H NMR (CDCl3): 0.79 (m, 1H), 0.96 (m, 4H),
1.09 (m, 2H), 1.25 (m, 1H), 1.38 (m, 4H), 1.42 (d, 1H), 1.51 (q,
1H), 1.71 (m, 4H), 1.86 (d, H), 1.99 (m, 4H), 2.61 (m, 1H), 2.81
(m, 2H), 2.90 (m, 2H), 2.95 (m, 2H), 3.19 (m, 1H), 3.54 (m,
1H), 4.22 (m, 1H), 7.18 (complex, 6H), 7.59 (br, NH2).
N-[1-Oxo-3-(2-pyr idyl)-3-ph en ylpr opyl]-L-pr olin e [tr a n s-
(4-Am in ocycloh exyl)m eth yl]a m id e (Dia ster eom er s 14
a n d 15). 14: Amorphous white lyophilizate, yield ) 30%.
High-resolution FAB MS ) M+ calcd ) 4.35.27600, obsd )
435.27610. Elemental Anal. for C26H34N4O2‚2.50TFA‚
0.85H2O: C (calcd 50.66, obsd 50.68), H (5.24 calcd, 5.19 obsd),
N (7.67 calcd, 7.85 obsd). 400 MHz 1H NMR (CDCl3): 0.92
(m, 2H), 1.52 (m, 4H), 1.80 (m, 2H), 1.95 (m, 4H), 7.09 (m,
2H), 2.20 (m, 2H), 2.94 (m, 2H), 3.19 (m, 2H), 3.59 (m, 2H),
4.36 (m, 1H), 4.96 (m, 1H), 7.16 (t, 1H), 7.31 (complex, 5H),
7.61 (d, 1H), 8.06 (m, 1H), 8.11 (m, 1H), 8.78 (m, 1H).
15: Amorphous white lyophilizate, yield ) 27%. High-
resolution FAB MS: M+ calcd ) 435.27600, obsd ) 435.77710.
Elemental Anal. for C26H34N4O2‚2.50TFA‚0.75H2O: C (calcd
51.41, obsd 51.44), H (calcd 5.15, obsd 5.02), N (calcd 7.74, obsd
7.74). 400 MHz 1H NMR (CDCl3): 0.78 (m, 2H), 1.18 (m, 2H),
1.30 (m, 2H), 1.55 (m, 2H), 1.99 (m, 5H), 2.78 (m, 1H), 2.91
(m, 1H), 3.04 (d, 1H), 3.16 (m, 1H), 3.39 (m, 1H), 3.80 (m, 1H),
4.00 (t, 1H), 4.40 (m, 1H), 4.89 (m, 1H), 7.31 (complex, 5H),
7.49 (br t, 1H), 7.79 (d, 1H), 8.00 (m, 1H), 8.23 (m, 1H), 8.64
(d, 1H).
Refer en ces
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C. Design of Highly Potent Noncovalent Thrombin Inhibitors
that Utilize a Novel Lipophilic Binding Pocket in the Thrombin
Active Site. J . Med. Chem. 1997, 40, 830-832.
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R. J .; Baskin, E. P.; Woltmann, R.; Lynch, J . J .; Lyle T. A.;
Appleby, S. D.; Chen, I-W.; Dancheck, K. B.; Vacca, J . P. Potent
Non-Covalent Thrombin Inhibitors that Utilize the Unique
Amino Acid D-Dicyclohexylalanine in the P3 Position. Implica-
tions on Oral Bioavailability and Antithrombotic Efficacy. J .
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(3) (a) Balasubramanian, N.; St. Laurent, D. R.; Federici, M. E.;
Meanwell, N. A.; Wright, J . J .; Schumacher, W. A.; Seiler, S. M.
Active Site-Directed Synthetic Thrombin Inhibitors: Synthesis
in Vitro and in Vivo Activity Profile of BMY 44621 and Analogs.
An Examination of the Role of the Amino Group in the D-Phe-
Pro-Arg-H Series. J . Med. Chem. 1993, 36, 300-303. (b) World
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(4) Leclere, G.; Decker, N.; Schwartz, J . Synthesis and Cardiovas-
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a New Series of Cyclohexylaralkylamine
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(5) Beylin, V. G.; Chen, H. G.; Dunbar, J .; Goel, O. P.; Harter, W.;
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N-[1-Oxo-3-(3-pyr idyl)-3-ph en ylpr opyl]-L-pr olin e [tr a n s-
(4-Am in ocycloh exyl)m eth yl]a m id e (Dia ster eom er s 16
a n d 17). 16: Glassy amorphous solid, yield ) 30%. High-
resolution FAB MS: M+ calcd ) 435.27600, obsd ) 435.27530.
Elemental Anal. for C26H34N4O2‚2.50 TFA‚1.45H2O: C (calcd
49.97, obsd 49.55), H (calcd 5.33, obsd 4.93), N (calcd 7.51, obsd
7.47). 400 MHz 1H NMR (CDCl3): 0.95 (m, 2H), 1.39 (m, 4H),
1.76 (m, 2H), 1.92 (m, 2H), 2.06 (m, 3H), 2.21 (m, 1H), 2.91
(m, 2H), 3.04 (m, 2H), 3.15 (m, 1H), 4.41 (m, 1H), 4.78 (t, 1H),
7.04 (t, 1H), 7.28 (complex, 5H), 7.90 (d, 1H), 8.25 (m, 1H),
8.59 (m, 1H), 8.71 (s, 1H).
(6) Wierzbicki, M.; Hugory, P.; Duhault, J .; Cocour, F.; Boulanger,
M.; Eur. Patent Appl. 518769A1; Adir et al., Fr.
(7) Molecular modeling was performed as follows: Models were
constructed using AMF/C View (AMF is Merck proprietary
software). The ligands were energy-minimized within the context
of the active site using OPTiMOL with the MMFF force field.
The amino group of the P1 cyclohexyl ring was held fixed in the
position corresponding to the crystal structure of 1.
(8) Merck Research Laboratories, unreported results.
J M970397Q