Journal of Medicinal Chemistry
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prepare 4 was followed except that 7-azabicyclo[2.2.1]heptane was
ppm. HRMS, m/z calcd for C23H16ClN4O [(M + H)+], 399.1007;
found, 399.1013.
used in place of 2,5-dimethylpyrrolidine to give the title compound in
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2-Amino-8-nicotinoyl-4-phenyl-5H-indeno[1,2-d]pyrimidin-5-one
(11). Powdered NaOH (420 mg, 10.5 mmol) was added to an NMP
solution (1.5 mL) of 2-amino-4-phenyl-8-(pyridin-3-ylmethyl)-5H-
indeno[1,2-d]pyrimidin-5-one (6) (400 mg, 1.1 mmol). Air was
bubbled into the solution at a steady rate using a steel needle, and the
mixture was heated to 80 °C. After 18 h, the air needle was removed,
and water was added. The resulting solid was filtered off, washed with
water, and dried in vacuo. The crude solid was dissolved in THF and
dry packed onto silica gel. Column chromatography gave 110 mg
(26%) of 2-amino-8-nicotinoyl-4-phenyl-5H-indeno[1,2-d]pyrimidin-
5-one (11). Rt = 3.56 min. 1H NMR (400 MHz, DMSO-d6): δ 8.97 (s,
1H), 8.89 (d, J = 4.55 Hz, 1H), 8.13−8.25 (m, 3H), 8.00−8.10 (m,
4H), 7.86 (d, J = 7.58 Hz, 1H), 7.66 (dd, J = 5.31, 7.83 Hz, 1H), 7.48−
7.61 (m, 3H) ppm. 13C NMR (151 MHz, DMSO-d6): δ 194.1, 186.9,
175.4, 165.9, 165.5, 153.7, 150.6, 141.4, 140.1, 140.0, 137.7, 136.0,
135.2, 132.9, 131.6, 130.0, 128.3, 124.3, 123.9, 122.0, 111.7 ppm.
HRMS, m/z calcd for C23H15N4O2 [(M + H)+], 379.1190; found,
379.1221.
40% yield. Rt = 3.04 min. H NMR (400 MHz, DMSO-d6): δ 8.05−
8.16 (m, 3H), 8.01 (d, J = 7.07 Hz, 2H), 7.97 (d, J = 7.58 Hz, 1H),
7.75 (d, J = 7.58 Hz, 1H), 7.48−7.61 (m, 3H), 4.38 (d, J = 6.06 Hz,
2H), 3.95 (br. s., 2H), 2.24 (d, J = 8.59 Hz, 2H), 2.04 (d, J = 8.59 Hz,
2H), 1.77 (d, J = 8.59 Hz, 2H), 1.67 (d, J = 8.08 Hz, 2H) ppm. 13C
NMR (101 MHz, DMSO-d6): δ 186.8, 175.4, 164.8, 164.7, 139.9,
137.7, 136.8, 135.4, 135.3, 131.0, 129.5, 127.7, 123.3, 123.2, 111.0,
62.7, 48.3, 26.9, 25.1 ppm. HRMS, m/z calcd for C24H23N4O [(M +
H)+], 383.1866; found, 383.1848.
2-Amino-4-phenyl-8-(pyridin-3-ylmethyl)-5H-indeno[1,2-d]-
pyrimidin-5-one (6). A dioxane/water (4:1) solution (5 mL) of 2-
amino-8-(bromomethyl)-4-phenyl-5H-indeno[1,2-d]pyrimidin-5-one
(175 mg, 0.48 mmol), 3-pyridylboronic acid (94 mg, 0.77 mmol),
K2CO3 (133 mg, 0.96 mmol), and Pd(dppf)Cl2 (39 mg, 0.05 mmol)
was heated in the microwave at 120 °C for 10 min. The resulting
mixture was diluted with THF and EtOAc, washed with water and
brine, dried (Na2SO4), concentrated, and purified to give 112 mg
(64%) of 6. Compound 6 was dissolved in THF added dropwise to an
excess of HCl in ether. The resulting precipitate was filtered off to give
115 mg of 2-amino-4-phenyl-8-(pyridin-3-ylmethyl)-5H-indeno[1,2-
2-Amino-8-(difluoro(pyridin-3-yl)methyl)-4-phenyl-5H-indeno-
[1,2-d]pyrimidin-5-one (12). 2-Amino-8-nicotinoyl-4-phenyl-5H-
indeno[1,2-d]pyrimidin-5-one (110 mg, 0.29 mmol) was dissolved in
neat DAST (1 mL), and the mixture was heated to 70 °C. After 4 h,
the mixture was concentrated in vacuo and partitioned between DCM
and water. The organic layer was dried (Na2SO4), concentrated, and
purified via column chromatography to give 27 mg (23%) of 2-amino-
8-(difluoro(pyridin-3-yl)methyl)-4-phenyl-5H-indeno[1,2-d]-
1
d]pyrimidin-5-one (6) as the di-HCl salt. Rt = 3.01 min. H NMR
(400 MHz, DMSO-d6): δ 9.01 (s, 1H), 8.84 (d, J = 5.05 Hz, 1H), 8.54
(d, J = 8.08 Hz, 1H), 7.91−8.12 (m, 5H), 7.73 (s, 1H), 7.65 (s, 2H),
7.46−7.59 (m, 3H), 4.39 (s, 2H) ppm. 13C NMR (101 MHz, DMSO-
d6): δ 186.9, 175.4, 164.6, 164.3, 145.9, 145.7, 141.7, 140.3, 140.1,
135.3, 135.2, 134.9, 133.5, 130.8, 129.4, 127.6, 127.0, 123.5, 121.4,
111.0, 37.1 ppm. HRMS, m/z calcd for C23H17N4O [(M + H)+],
365.1379; found, 365.1395.
5-((2-Amino-5-oxo-4-phenyl-5H-indeno[1,2-d]pyrimidin-8-yl)-
methyl)nicotinonitrile (7). The same procedure used to prepare 6 was
followed except that (5-cyanopyridin-3-yl)boronic acid was used in
place of 3-pyridylboronic acid to give the title compound in 64% yield.
Rt = 4.33 min. 1H NMR (400 MHz, DMSO-d6): δ 8.86−8.97 (m, 2H),
8.34 (s, 1H), 7.99 (d, J = 7.07 Hz, 3H), 7.45−7.70 (m, 7H), 4.25 (s,
2H) ppm. 13C NMR (101 MHz, DMSO-d6): δ 186.9, 175.4, 164.5,
164.2, 153.6, 150.4, 146.4, 140.0, 139.9, 136.5, 135.2, 134.7, 133.4,
130.8, 129.4, 127.6, 123.4, 121.2, 116.8, 111.0, 109.0, 37.3 ppm.
HRMS, m/z calcd for C24H16N5O [(M + H)+], 390.1349; found,
390.1395.
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pyrimidin-5-one (12). Rt = 4.10 min. H NMR (400 MHz, DMSO-
d6): δ 8.89 (s, 1H), 8.78 (d, J = 3.54 Hz, 1H), 8.15 (br. s., 1H), 8.09
(d, J = 7.58 Hz, 2H), 8.01 (d, J = 7.07 Hz, 2H), 7.92 (d, J = 7.58 Hz,
1H), 7.78−7.84 (m, 2H), 7.47−7.63 (m, 4H) ppm. 13C NMR (151
MHz, DMSO-d6): δ 186.8, 175.3, 165.8, 165.5, 152.3, 146.8, 140.7,
138.5, 136.0, 134.1, 132.5, 132.4, 131.5, 130.7, 130.0, 128.2, 124.5,
124.3, 120.1, 117.8, 111.5 ppm. HRMS, m/z calcd for C23H15F2N4O
[(M + H)+], 401.1208; found, 401.1196.
2-Amino-8-(4-methylpiperazine-1-carbonyl)-4-phenyl-5H-
indeno[1,2-d]pyrimidin-5-one (13). Neat piperazine (0.4 mL, 3.6
mmol) was added to a THF solution (60 mL) of acid 21 (1.7 g, 3.3
mmol), diisopropylethylamine (1.7 mL, 9.9 mmol), and HATU (1.3 g,
3.3 mmol). The resulting mixture was heated to 40 °C. After 18 h, the
mixture was concentrated and purified via column chromatography to
give 1.8 g (91%) of bis-tert-butyl (8-(4-methylpiperazine-1-carbonyl)-
5-oxo-4-phenyl-5H-indeno[1,2-d]pyrimidin-2-yl)carbamate that was
used immediately. The bis-tert-butyl (8-(4-methylpiperazine-1-carbon-
yl)-5-oxo-4-phenyl-5H-indeno[1,2-d]pyrimidin-2-yl)carbamate (1.8 g,
3.0 mmol) was then stirred in 25 mL of CH2Cl2/TFA (4:1). After 3 h,
the mixture was concentrated, neutralized with saturated aqueous
NaHCO3, and filtered to give 1 g of crude 2-amino-8-(4-
methylpiperazine-1-carbonyl)-4-phenyl-5H-indeno[1,2-d]pyrimidin-5-
one (13). The solid was purified via column chromatography to give
893 mg (75%) of 13 as the free base, which was dissolved in THF and
added to 10 mL of 1 N HCl in ether, concentrated, and dried in vacuo
to give 2-amino-8-(4-methylpiperazine-1-carbonyl)-4-phenyl-5H-
indeno[1,2-d]pyrimidin-5-one (13) as the di-HCl salt. Rt = 2.63
2-Amino-8-((5-fluoropyridin-3-yl)methyl)-4-phenyl-5H-indeno-
[1,2-d]pyrimidin-5-one (8). The same procedure used to prepare 6
was followed except that (5-fluoropyridin-3-yl)boronic acid was used
in place of 3-pyridylboronic acid to give the title compound in 74%
1
yield. Rt = 3.92 min. H NMR (400 MHz, DMSO-d6): δ 8.62 (d, J =
6.06 Hz, 2H), 8.20 (br. s., 2H), 7.91−8.03 (m, 3H), 7.69 (s, 1H),
7.62−7.68 (m, 2H), 7.45−7.61 (m, 3H), 4.27 (s, 2H) ppm. HRMS,
m/z calcd for C23H16FN4O [(M + H)+], 383.1303; found, 383.1229.
2-Amino-8-((3-fluoropyridin-4-yl)methyl)-4-phenyl-5H-indeno-
[1,2-d]pyrimidin-5-one (9). The same procedure used to prepare 6
was followed except that (3-fluoropyridin-4-yl)boronic acid was used
in place of 3-pyridylboronic acid to give the title compound in 69%
yield. Rt = 3.63 min. 1H NMR (400 MHz, DMSO-d6): δ 8.66 (s, 1H),
8.48 (d, J = 4.04 Hz, 1H), 8.02−8.15 (br. s., 2H), 7.99 (d, J = 7.07 Hz,
2H), 7.44−7.71 (m, 7H), 4.28 (s, 2H) ppm. 13C NMR (101 MHz,
DMSO-d6): δ 186.9, 175.4, 164.6, 164.3, 145.2, 144.8, 142.5, 140.0,
136.6, 135.3, 135.0, 133.4, 130.9, 129.5, 127.7, 126.4, 123.5, 121.0,
119.7, 111.0, 33.7 ppm. HRMS, m/z calcd for C23H16FN4O [(M +
H)+], 383.1303; found, 383.1322.
2-Amino-8-((4-chloropyridin-3-yl)methyl)-4-phenyl-5H-indeno-
[1,2-d]pyrimidin-5-one (10). The same procedure used to prepare 6
was followed except that (4-chloropyridin-3-yl)boronic acid was used
in place of 3-pyridylboronic acid to give the title compound in 56%
yield. Rt = 3.60 min. 1H NMR (400 MHz, DMSO-d6): δ 8.99 (s, 1H),
8.73 (d, J = 5.56 Hz, 1H), 8.15 (br. s., 2H), 7.90−8.03 (m, 3H), 7.45−
7.68 (m, 6H), 4.40 (s, 2H) ppm. 13C NMR (101 MHz, DMSO-d6): δ
186.7, 175.4, 164.2, 164.1, 147.5, 145.3, 144.6, 139.8, 134.9, 135.7,
134.7, 134.7, 133.6, 131.0, 129.5, 127.7, 126.5, 123.4, 121.0, 111.0, 35.7
1
min. H NMR (400 MHz, chloroform-d): δ ppm 2.34 (s, 3 H), 2.39
(br. s., 2 H), 2.52 (d, J = 2.20 Hz, 2 H), 3.46 (br. s., 2 H), 3.84 (br. s., 2
H), 5.86 (br. s., 2 H), 7.46−7.64 (m, 4 H), 7.78 (d, J = 7.58 Hz, 1 H),
7.85 (s, 1 H), 8.07 (dd, J = 7.83, 1.71 Hz, 2 H) ppm. 13C NMR (101
MHz, DMSO-d6): δ 186.5, 175.1, 167.8, 165.0, 164.9, 140.2, 139.6,
137.0, 135.5, 131.5, 130.9, 129.4, 127.6, 123.2, 119.3, 110.9, 57.1, 51.3,
42.2 ppm. HRMS, m/z calcd for C23H22N5O2 [(M + H)+], 400.1768;
found, 400.1780.
2-Amino-8-(2-morpholinoethoxy)-4-phenyl-5H-indeno[1,2-d]-
pyrimidin-5-one (14). Solid potassium tert-butoxide (t-BuOK) (9.7 g,
86.5 mmol) was added to a DMF solution (200 mL) of 25 (10.0 g,
34.6 mmol) and 4-(2-chloroethyl)morpholine hydrochloride (7.1 g,
38.1 mmol), and the resulting solution was heated to 75 °C. After 4 h
at 75 °C, the mixture was cooled to room temperature diluted with
tetrahydrofuran (THF) and EtOAc and washed with brine, water, and
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dx.doi.org/10.1021/jm201640m | J. Med. Chem. 2012, 55, 1402−1417