were recorded on a Varian Oxford AS500 instrument and calibrated
by using residual undeuterated solvent or tetramethylsilane as an
internal reference. LCMS experiments were performed on an Agi-
lent 1100 Series LC/MSD instrument with a Phenomenex Synergi
4u Fusion-RP 80 A column (150ꢁ4.6 mm). DanAla was synthesized
as described.[13]
0.885 mmol) and 4-dimethylaminopyridine (DMAP; 21.6 mg,
0.177 mmol) were dissolved in CH2Cl2 (4 mL), and the mixture was
cooled to 08C. Et3N (0.136 mL, 0.974 mmol) and Boc2O (289.8 mg,
1.328 mmol) in CH2Cl2 (2 mL) were added dropwise to this stirring
mixture. The reaction mixture was allowed to warm to room tem-
perature and stirred for 4 h. Saturated aqueous NH4Cl solution was
added to the mixture. The aqueous phase was separated and
washed with CH2Cl2 (3ꢁ10 mL). The combined organic phase was
washed with brine, dried with sodium sulfate, and concentrated
under reduced pressure. The residue was purified by FCC (ethyl
acetate/hexanes 1:3, v/v) to give compound 9 (538.6 mg, 97%).
Rf =0.34 (SiO2, ethyl acetate/hexanes 1:2, v/v).
NMR (1H and 13C) and HRMS data for compounds are given in the
Supporting Information.
Compound 5: Boc-Dap-OH (2.0 g, 9.8 mmol) was added in one
portion to a stirring solution of dansyl chloride (2.4 g, 8.9 mmol)
and Et3N (2.6 mL) in CH2Cl2 (50 mL) at 08C. The reaction mixture
was allowed to warm to room temperature. After being stirred for
12 h, the reaction mixture was concentrated under reduced pres-
sure. The residue was purified by FCC (MeOH/CH2Cl2 7:93, v/v) to
give compound 5 (3.675 g, 94%) as a yellow solid. Rf =0.22 (SiO2,
MeOH/CHCl3 1:8, v/v).
Compound 10: Pd/C (87.3 mg) was added to a solution of com-
pound 9 (515.0 mg, 0.82 mmol) in methanol. The reaction mixture
was stirred under hydrogen for 2 h at room temperature. The reac-
tion mixture was passed through a short plug of celite and eluted
with ethyl acetate. The filtrate was concentrated to give com-
pound 10 (467.3 mg) as
MeOH/CHCl3 1:10, v/v).
a yellow-green solid. Rf =0.22 (SiO2,
Compound 6: Compound 5 (218.8 mg, 0.50 mmol) was dissolved
in DMF (2 mL), and the mixture was cooled to 08C. DIPEA
(0.096 mL, 0.55 mmol) and MeI (0.062 mL, 1.00 mmol) were added
dropwise to the solution. The reaction mixture was allowed to
warm to room temperature and stirred for 12 h. Water (20 mL) was
added, and the solution was extracted with ethyl acetate (3ꢁ
20 mL). The organic phase was washed with brine, dried with
sodium sulfate, and concentrated under reduced pressure. The res-
idue was purified by FCC (ethyl acetate/hexanes 3:7, v/v) to give
compound 6 (197.4 mg, 87%) as a yellow solid.
Compound 11: Compound 10 (434.9 mg, 0.809 mmol) was dis-
solved in CH3CN, and the mixture was cooled to 08C. DIPEA
(0.56 mL, 3.236 mmol) and bromomethyl acetate (0.24 mL,
2.427 mmol) were added dropwise to the solution. The reaction
mixture was allowed to warm to room temperature and stirred for
12 h, then concentrated under reduced pressure. The residue was
purified by FCC (ethyl acetate/hexanes 1:2, v/v) to give com-
pound 11 (389.5 mg, 84% over 2 steps) as yellow-green solid. Rf =
0.31 (SiO2, ethyl acetate/hexanes 1:2, v/v).
Compound 7: Compound 5 (218.8 mg, 0.50 mmol) was dissolved
in DMF (2 mL), and the mixture was cooled to 08C. DIPEA
(0.096 mL, 0.55 mmol) and EtI (0.080 mL, 1.00 mmol) were added
dropwise to the solution. The reaction mixture was allowed to
warm to room temperature and stirred for 12 h. Water (20 mL) was
added, and the solution was extracted with ethyl acetate (3ꢁ
20 mL). The organic phase was washed with brine, dried with
sodium sulfate, and concentrated under reduced pressure. The res-
idue was purified by FCC (ethyl acetate/hexanes 3:7, v/v) to give
compound 7 (174.1 mg, 75%) as a yellow solid.
Compound 4: Compound 11 (61.0 mg, 0.10 mmol) was dissolved
in CH2Cl2 (0.9 mL), and the mixture was cooled to 08C. TFA (0.3 mL)
was added dropwise to the solution. The reaction mixture was al-
lowed to warm to room temperature and stirred for 6 h, then con-
centrated under reduced pressure. After being under vacuum for
48 h, the residue was dissolved in DMSO (1.0 mL) for use.
Cell lines and culture conditions: HEK293T cells were used for de-
termining the UAA intracellular concentration and imaging experi-
ments. A stable clonal HeLa cell line containing the GFP gene with
Tyr182UAG mutation was previously established in this lab and
was used here for assaying UAA incorporation efficiency.[6]
HEK293T and HeLa-GFP(Tyr182UAG) cells were cultured in Dulbec-
co’s modified Eagle’s medium (DMEM, Mediatech) supplemented
with 10% fetal bovine serum (FBS).
Compound 2: Compound 6 (45.2 mg, 0.10 mmol) was dissolved in
CH2Cl2 (0.9 mL), and the mixture was cooled to 08C. Trifluoroacetic
acid (TFA; 0.3 mL) was added dropwise to the solution. The reac-
tion mixture was allowed to warm to room temperature and
stirred for 4 h, then concentrated under reduced pressure. After
being under vacuum for 48 h, the residue was dissolved in dimeth-
yl sulfoxide (DMSO; 1.0 mL) for use.
Fluorescence imaging: HEK293T cells (3ꢁ105) were seeded into an
imaging dish supplemented with DMEM with 10% FBS, but with-
out phenol red. After 18–24 h, DanAla or DanAla-OAM was added
to the medium to a final concentration of 0.10 mm. Cells were im-
mediately imaged with an Olympus IX81 spinning disc microscope
with a Hamamatsu EM-CCD under the same conditions, lex =360Æ
30 nm, lem =535Æ20 nm. After each time point, cells were placed
back into the incubator. Images were analyzed in Slidebook 4.2 by
using the masking tool and average intensity function. Cells not
treated with any compound were used as control to determine
background fluorescence, which was subtracted from the mea-
sured intensities of samples to yield the final net intensities.
Compound 3: Compound 7 (46.6 mg, 0.10 mmol) was dissolved in
CH2Cl2 (0.9 mL), and the mixture was cooled to 08C. TFA (0.3 mL)
was added dropwise to the solution. The reaction mixture was al-
lowed to warm to room temperature and stirred for 4 h, then con-
centrated under reduced pressure. After being under vacuum for
48 h, the residue was dissolved in DMSO (1.0 mL) for use.
Compound 9: Compound 5 (569.4 mg, 1.30 mmol) was dissolved
in DMF (10 mL), and the mixture was cooled to 08C. DIPEA
(0.25 mL, 1.43 mmol) and benzyl bromide (0.31 mL, 2.60 mmol)
were added dropwise to the solution. The reaction mixture was al-
lowed to warm to room temperature and stirred for 24 h. Water
(70 mL) was added and the solution was extracted with ethyl ace-
tate (50 mL). The organic phase was washed with brine, dried with
sodium sulfate, and concentrated under reduced pressure. The res-
idue was purified by FCC (ethyl acetate/hexanes 1:3–1:2, v/v) to
give Boc-DanAla-OBn (522.1 mg, 76%) as a yellow solid. Rf =0.25
(SiO2, ethyl acetate/hexanes 1:2, v/v). Boc-DanAla-OBn (466.7 mg,
HPLC analysis of intracellular concentration: HEK293T cells (8.5ꢁ
106) were seeded into a 10 cm tissue culture dish supplemented
with DMEM containing 10% FBS. After 18–24 h, DanAla or DanAla-
OAM was added to the medium to a final concentration of 0.1 mm.
The compounds were incubated with cells for 1 h. Cells were then
washed with phosphate-buffered saline (PBS; 1 mL) several times.
ChemBioChem 2010, 11, 2268 – 2272
ꢀ 2010 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim
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