Crystal Growth & Design
Article
(λ = 0.71073 Å) at 298(2) K, with increasing ω (width of 0.3° per
frame) at a scan speed of 3 s per frame. The SMART software was
used for data acquisition. Data integration and reduction were
undertaken with SAINT and XPREP22 software. Multiscan empirical
absorption corrections were applied to the data using the program
SADABS.23 Structures were solved by direct methods using SHELXS-
9724a and were refined by full-matrix least-squares on F2 using
SHELXL-9724b program package. In all the nine complexes, non-
hydrogen atoms were refined anisotropically. Hydrogen atoms
attached to all carbon atoms are geometrically fixed. Structural
illustrations have been generated using ORTEP-325a and MERCURY
1.325b for Windows. Crystal data, as well as details of data collection
and refinement for the complexes, are summarized in Tables 1 and 2.
Selected bond distances and angles of the complexes are listed in
Table S1 of Supporting Information. Purity of the crystallographic
phases of the bulk sample was proven by the PXRD technique. PXRD
patterns of all the crystals match with the simulated one (see
Supporting Information).
Synthesis and Characterization. Both receptors have been
prepared by slight modification of a known literature procedure. The
2-[(2′-hydroxybenzyl) amino] benzimidazole (L1) and 2-[(2′-hydrox-
ynaphthylmethylene) amino] benzimidazole (L2) were synthesized by
the condensation of 2-aminobenzimidazole with corresponding
aromatic aldehyde in ethanol solution and in situ reduction with
sodium borohydride. It was finally recrystallized from ethanol.
L1: 1H NMR (DMSO-d6, 400 MHz) δ (ppm) 11.130(bs,1H),
7.371(s,1H), 7.243(d,1H), 7.169(dd,2H), 7.103(t,1H), 6.924(dd,2H),
6.804(d,1H), 6.765(d,1H), 4.390 (s,2H). 13C NMR (DMSO-d6)
155.622, 154.829, 133.566, 129.386, 128.410, 128.303, 126.389,
122.774, 122.599, 121.180, 117.848, 37.708. m.p. = 130 °C. m/z =
240.0710 (calcd. m/z = 240.11 in positive mode).
room temperature, which yielded light yellow crystals suitable for X-
ray crystallography analysis within 7−10 days. Yield 65%; H NMR
1
(DMSO-d6, 400 MHz; ppm): δ (ppm) 8.922(s, 1H), 8.644(bs, 1H),
7.951(s, 1H), 7.291−7.244(m, 3H), 7.125(t, 1H), 7.086 (m, 2H),
6.842−6.766(m, 2H), 4.457(s, 2H), 2.910(s, 3H), 2.710(s, 3H). m.p.
= 207°.
−
Synthesis of complex [L1H+][H2PO4 ] (5): The neutral host L1 (25
mg) was suspended in MeOH (10 mL), and a few drops of ortho
phosphoric acid were added in the mixture. After being stirred for 30
min, the clear solution was kept at room temperature. Block-shaped
crystals suitable for X-ray analysis were grown from this solution by
slow evaporation after one week. Yield 82%; 1H NMR (DMSO-d6, 400
MHz) δ 8.931(s, 1H), 7.269−7.220(m, 3H), 7.127−7.050 (m, 3H),
6.835(d, 1H), 6.762(t, 1H), 4.451(s, 2H), 3.164 (s, 3H). m.p. = 219°.
Synthesis of complex [L2H+][OAc−]·AcOH(6): It was obtained by
adding 0.4 mL of 37% acetic acid (AcOH) to 5 mL of methanol
solution of L2 (25 mg). After the addition of acid, the solution was
stirred at room temperature for 30 min and filtered in a test tube. The
filtrate was allowed to evaporate at room temperature, which yielded
colorless crystals suitable for X-ray crystallography analysis within 6−7
1
days. Yield 72%; H NMR (DMSO-d6, 400 MHz) δ (ppm) 8.142(d,
1H), 7.869(s, 1H), 7.800(d, 1H), 7.739(d, 1H), 7.518(t, 1H), 7.319(t,
1H), 7.186(m, 2H), 7.126(d, 1H), 6.942(m, 2H), 4.760(s, 2H),
1.906(s, 3H). m.p. = 215°.
Synthesis of complex [L2H+]·[DNB−] (7): It was obtained by
adding 0.5 mL of saturated solution of 3,5-dinitroacetic acid (DNB) to
5 mL of methanol solution of L2 (25 mg). The solution was stirred at
room temperature for 30 min and filtered in a test tube. The filtrate
was allowed to evaporate at room temperature, which yielded light
yellow crystals suitable for X-ray crystallography analysis within 7−10
1
days. Yield 74%; H NMR (DMSO-d6, 400 MHz) δ (ppm) 8.943(s,
L2: 1H NMR (DMSO-d6, 400 MHz) δ (ppm) 13.351(bs, 1H),
11.096(bs, 1H), 8.171(d, 1H), 7.884(s, 1H), 7.798(d, 1H), 7.743(d,
1H), 7.523(t, 1H), 7.319(t, 1H), 7.212(bs, 2H), 7.142(d, 1H),
6.960(bs, 2H), 4.790(s, 2H). 13C NMR (DMSO-d6) 156.095, 154.562,
154.119, 130.447, 128.914, 128.639, 127.106, 126.832, 125.291,
119.792, 119.075, 118.290, 117.542, 117.237, 115.704, 41.834. m.p.
= 233 °C. m/z = 290.0638 (calcd. m/z = 290.12 in positive mode).
Synthesis of complex [L1H+][Cl−] (1): It was obtained by adding
0.4 mL of 37% hydrochloric acid (HCl) to 5 mL of methanol solution
of L1 (25 mg). After the addition of acid, the solution was stirred at
room temperature for 30 min and filtered in a test tube. The filtrate
was allowed to evaporate at room temperature, which yielded colorless
crystals suitable for X-ray crystallography analysis within 6−7 days.
1H), 8.893(s, 1H), 8.435(s, 1H), 8.197(d, 1H), 7.948(s, 1H), 7.796(s,
1H), 7.515(t, 1H), 7.342(t, 1H), 7.252(m, 2H), 7.177(d, 1H),
7.039(m, 2H), 4.824(d, 2H), 2.932(s, 3H), 2.78(s, 3H). m.p. = 233°.
−
Synthesis of complex [L2H+][HSO4 ]·H2O (8) was obtained by
adding 0.4 mL of 37% of sulphuric acid (H2SO4) to 5 mL of methanol
solution of L2 (25 mg). After the addition of acid, the solution was
stirred at room temperature for 30 min and filtered in a test tube. The
filtrate was allowed to evaporate at room temperature, which yielded
colorless crystals suitable for X-ray crystallography analysis within 6−7
1
days. Yield 73%; H NMR (DMSO-d6, 400 MHz) δ (ppm) 12.471(s,
1H), 10.308(s, 1H), 9.178(s, 1H), 7.985(d, 1H), 7.879(d, 1H),
7.527(t, 1H),7.439(dd, 1H), 7.360(t, 1H), 7.274(dd, 1H), 4.931(s,
2H). m.p. = 245°.
1
Yield: 82%; H NMR (DMSO-d6, 400 MHz): δ (ppm) 9.238(t, 1H),
7.410(m, 1H), 7.264(d, 1H), 7.225(m, 1H), 7.160(t, 2H), 6.904(d,
RESULTS AND DISCUSSION
■
1H), 6.797(t, 2H), 4.547(d,2H). m.p. = 233°.
−
Synthesis of complex [L1H+][NO3 ] (2): It was obtained by adding
Anion Binding Studies in Solid State. For a receptor to
bind with the anionic guests, it should possess preorganized
anion binding elements decorated on the suitable platform/
framework. Here benzimidazole NH is a strong hydrogen bond
donor and in order to achieve electrostatic assistance the other
nitrogen can be protonated which can then strongly interact
with anions through (N−H)+···X− type ionic hydrogen
bonding because the charge−charge electrostatic interaction
dominates to bind the anions. Again OH functionality already
proved its importance in nature. Both aromatic and aliphatic
CH can also interact with anions through C−H···π interaction.
The crystallization of the complexes was achieved by slow
evaporation of methanolic or a binary solution of methanolic
and DMF solutions containing the receptor and appropriate
quantities of the acids. Attempts were made to synthesize
complexes of L1and L2 from various acids such as HCl, HBr,
HI, HNO3, H2SO4, H3PO4, CH3COOH, and 3,5-dinitrobenzoic
acid (DNB). However, we successfully isolated crystalline
complexes 1, 2, 3, 4, and 5 using respectively HCl, HNO3,
CH3COOH, DNB, and H3PO4 with L1 and complexes 6, 7, and
8 using CH3COOH, DNB, and H2SO4 with L2.
0.4 mL of 37% nitric acid (HNO3) to 5 mL of methanol solution of L1
(0.5 mmol). After the addition of acid, the solution was stirred at room
temperature for 30 min and filtered in a test tube. The filtrate was
allowed to evaporate at room temperature, which yield colorless
crystals suitable for X-ray crystallography analysis within 6−7 days.
Yield 82%; 1H NMR (DMSO-d6, 400 MHz) δ 7.989 (s, 1H),
7.235(dd, 1H), 7.138 (t, 2H), 7.109(t, 1H), 7.025 (dd, 2H), 6.832−
6.764 (m, 2H), 4.431(d, 2H), 1.910(s, 3H); m.p. = 125°.
Synthesis of complex [L1H+][OAc−] (3): The neutral host L1 (25
mg) was suspended in MeOH (10 mL), and a few (approximately
five) drops of acetic acid were added in the mixture. After being stirred
for 30 min, the clear solution was kept at room temperature. Block-
shaped crystals suitable for X-ray analysis were grown from this
1
solution by slow evaporation after one week. Yield 72%; H NMR
(DMSO-d6, 400 MHz) δ (ppm) 7.363(t, 1H), 7.223(d, 1H), 7.145(m,
2H), 7.109(t, 1H), 6.907(m, 2H), 6.765(m, 2H), 4.365(d, 2H),
1.910(s, 3H). M.pt. = 118°.
Synthesis of complex [L1H+][DNB]·DMF (4): It was obtained by
adding 0.4 mL of methanolic solution of 3,5-dinitro acetic acid (DNB)
to 5 mL of methanol−DMF binary solution of L1 (25 mg). After the
addition of acid, the solution was stirred at room temperature for 30
min and filtered in a test tube. The filtrate was allowed to evaporate at
4014
dx.doi.org/10.1021/cg300496t | Cryst. Growth Des. 2012, 12, 4012−4021