Modeling, Synthesis and Biological Evaluation of Potential RetinoidX Receptor-Selective Agonists: Novel Halogenated Analogues of 4-[1-(3,5,5,8,8-Pentamethyl-5,6,7,8-tetrahydro-2-naphthyl)ethynyl]benzoic Acid (Bexarotene)

Article abstract of DOI:10.1002/cmdc.201200319

The synthesis of halogenated analogues of 4-[1-(3,5,5,8,8-pentamethyl-5,6,7,8-tetrahydro-2-naphthyl)ethynyl]benzoic acid (1), known commonly as bexarotene, and their evaluation for retinoidX receptor (RXR)-specific agonist performance is described. Compound 1 is FDA approved to treat cutaneous T-cell lymphoma (CTCL); however, bexarotene treatment can induce hypothyroidism and elevated triglyceride levels, presumably by disrupting RXR heterodimer pathways for other nuclear receptors. The novel halogenated analogues in this study were modeled and assessed for their ability to bind to RXR and stimulate RXR homodimerization in an RXRE-mediated transcriptional assay as well as an RXR mammalian-2-hybrid assay. In an array of eight novel compounds, four analogues were discovered to promote RXR-mediated transcription with EC₅₀ values similar to that of 1 and are selective RXR agonists. Our approach also uncovered a periodic trend of increased binding and homodimerization of RXR when substituting a halogen atom for a proton ortho to the carboxylic acid on 1.

Full text of DOI:10.1002/cmdc.201200319

MED
DOI: 10.1002/cmdc.201200319
Modeling, Synthesis and Biological Evaluation of Potential
Retinoid X Receptor-Selective Agonists: Novel
Halogenated Analogues of 4-[1-(3,5,5,8,8-Pentamethyl-
5,6,7,8-tetrahydro-2-naphthyl)ethynyl]benzoic Acid
(Bexarotene)
Julie K. Furmick,[a] Ichiro Kaneko,[a] Angela N. Walsh,[a] Joanna Yang,[a] Jaskaran S. Bhogal,[a]
Geoffrey M. Gray,[c] Juan C. Baso,[c] Drew O. Browder,[a] Jessica L. S. Prentice,[a]
Luis A. Montano,[a] Chanh C. Huynh,[a] Lisa M. Marcus,[a] Dorian G. Tsosie,[a]
Jungeun S. Kwon,[a] Alexis Quezada,[a] Nicole M. Reyes,[a] Brittney Lemming,[a] Puneet Saini,[a]
Arjan van der Vaart,[c] Thomas L. Groy,[b] Pamela A. Marshall,[a] Peter W. Jurutka,[a] and
Carl E. Wagner*[a]
The synthesis of halogenated analogues of 4-[1-(3,5,5,8,8-pen-
tamethyl-5,6,7,8-tetrahydro-2-naphthyl)ethynyl]benzoic acid (1),
known commonly as bexarotene, and their evaluation for reti-
noid X receptor (RXR)-specific agonist performance is de-
scribed. Compound 1 is FDA approved to treat cutaneous T-
cell lymphoma (CTCL); however, bexarotene treatment can
induce hypothyroidism and elevated triglyceride levels, pre-
sumably by disrupting RXR heterodimer pathways for other
nuclear receptors. The novel halogenated analogues in this
study were modeled and assessed for their ability to bind to
RXR and stimulate RXR homodimerization in an RXRE-mediated
transcriptional assay as well as an RXR mammalian-2-hybrid
assay. In an array of eight novel compounds, four analogues
were discovered to promote RXR-mediated transcription with
EC50 values similar to that of 1 and are selective RXR agonists.
Our approach also uncovered a periodic trend of increased
binding and homodimerization of RXR when substituting a hal-
ogen atom for a proton ortho to the carboxylic acid on 1.
Introduction
Retinoids are small molecules that interact with at least two
specific nuclear receptors and regulate cellular processes such
as gene transcription, proliferation and differentiation. The two
major nuclear receptors that retinoids target are retinoid X re-
ceptors (RXRs) and retinoic acid receptors (RARs), and both re-
ceptors have three known subtypes: a, b and g.[1] Retinoid re-
ceptors, in addition to other lipophilic hormone molecule re-
ceptors, are part of a larger receptor superfamily, including the
vitamin D receptor (VDR) and thyroid hormone receptor (TR),
all of which essentially function to promote transcription in the
presence of an appropriate molecular signal. This molecular
signal, usually comprised of an endogenous ligand, binds in
the protein’s ligand binding pocket (LBP), inducing a conforma-
tional change that ultimately enables the protein to bind to
a hormone responsive element (HRE) specific for the receptor
on DNA. Many HREs are located in or proximal to the promoter
regions for the genes they regulate, although a growing
number of these elements can be found at large distances up-
stream or downstream of the gene they control. Nonetheless,
HREs are typically constructed of minimal core hexad sequen-
ces consisting of half-sites interrupted by nucleotide spacers of
variable length between inverted, everted or direct repeats.[2]
Nuclear receptors activate transcription by binding to the HREs
as heterodimers or homodimers, where each partner binds to
a half-site in the element.
Although initially proposed to operate as homodimers,[3]
HRE high affinity binding by RAR, VDR and TR actually pro-
ceeds via an RXR heterodimer.[4] When RXR binds to its natural
9-cis retinoic acid (9-cis-RA) ligand, it forms a homodimer that
associates with the RXR responsive element or RXRE, but when
functioning as a heterodimeric partner with other receptors,
[a] J. K. Furmick, Dr. I. Kaneko, A. N. Walsh, J. Yang, J. S. Bhogal, D. O. Browder,
J. L. S. Prentice, L. A. Montano, C. C. Huynh, L. M. Marcus, D. G. Tsosie,
J. S. Kwon, A. Quezada, N. M. Reyes, B. Lemming, P. Saini, Dr. P. A. Marshall,
Dr. P. W. Jurutka, Dr. C. E. Wagner
School of Mathematical and Natural Sciences
New College of Interdisciplinary Arts&Sciences
Arizona State University, 4701 W. Thunderbird Rd., Glendale, AZ 85306
(USA)
E-mail: Carl.Wagner@asu.edu
[b] Dr. T. L. Groy
Department of Chemistry and Biochemistry
College of Liberal Arts&Sciences
Arizona State University, 551 E. University Dr., Tempe, AZ 85287 (USA)
[c] G. M. Gray, J. C. Baso, Dr. A. van der Vaart
Department of Chemistry, University of South Florida
4202 E. Fowler Ave., CHE 205, Tampa, FL 33620 (USA)
Supporting information for this article is available on the WWW under
http://dx.doi.org/10.1002/cmdc.201200319.
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RXR can be either liganded or unliganded. For exam-
ple, in the case of the RXR–VDR heterodimer, RXR is
believed to be unliganded.[5] There are a few nuclear
receptors, such as the liver X receptor (LXR), that
form heterodimers with liganded RXR.[6] Thus, RXR
often plays the role of the “master” partner, control-
ling the operation of several nuclear receptors
through liganded and unliganded heterodimers that effect
specific physiological equilibria via control of gene expres-
sion.[7]
Additionally, compound 1 and several of its analogues have
been considered in non-insulin-dependent diabetes mellitus
(NIDDM) mouse models.[16] Despite the ability of compound
1 to specifically activate RXR, versus RAR, the primary draw-
backs to treatment with 1 include hyperlipidemia, hypothyr-
oidism,[17] and cutaneous toxicity. Many of these side effects
occur either because of antagonism of a non-permissive recep-
tor, as in the case of TR for hypothyroidism,[18] or agonism of
a permissive receptor, as in the cases of LXR for hyperlipide-
mia[19] and RAR for cutaneous toxicity,[20] at the typical dose
concentration. Hence, there is ample motivation to explore
novel RXR agonists that may attenuate or avoid these side ef-
fects.
Notably, ligand-promoted RXR homodimer transcriptional
activity is suppressed for most cases where RXR is coordinated
in a heterodimer with an endogenous ligand-bound receptor
such as TR or VDR, and the TR and VDR partners in these RXR
heterodimers are termed “nonpermissive” partners for RXR.[5] In
contrast to TR and VDR, RAR forms a heterodimer with RXR
when RAR binds to all-trans-retinoic acid, but the RXR partner
is still capable of binding 9-cis-RA, and both retinoids act in
synergy to promote RAR/RARE-mediated gene transcription.
When synthetic high-affinity RXR binding ligands (rexinoids) or
9-cis-RA are available, even in the presence of the TR and VDR
agonists for the TR-RXR or VDR-RXR heterodimers, the rexi-
noids divert RXR proteins from heterodimer formation, instead
promoting RXR homodimer formation and decreasing thyroid
hormone and 1,25(OH)2D3 responsiveness. Altering the binding
ligand structure for a given nuclear receptor (NR), especially
the RXR master heteropartner ligand, produces specific NR
modulators (SNuRMs) that have unique properties that exert
novel influences on the NR activity.[8]
There are a plethora of demonstrated RXR agonists modeled
on 1. For example, cyclopropyl dienoic acid 3,[21] and several
novel aza-retinoids, of which compound 4[22] is representative,
in addition to amide retinoids[23] have all been disclosed. The
thiocarbamate bexarotene analogue 5[24] induces apoptosis
when administered to leukemia HL-60 cells. Substituting pyri-
dine for one of the aromatic rings has led to several analogues
of 1, such as compound 6,[25] and analogues of 1 possessing
unsaturation in the aliphatic ring, as in compound 7,[26] have
also been reported. Studies describing the development of se-
lective RXR agonists containing aryl-trienoic acid moieties,
either alone,[27] or locked by one[28] or two[29] ring systems,
were disclosed by Boehm et al., for which compound 8 is rep-
resentative of the latter. Acetal 9[30] and compound 10[7] are
both selective, potent RXR agonists, with the latter serving as
a model to design a potent RXR antagonist. Also, our group re-
cently synthesized an analogue of 1 bearing a fluorine atom
ortho to the carboxylic acid moiety, 2-fluoro-4-(1-(1,2,3,4-tetra-
hydro-1,1,4,4,6-pentamethylnaphthalen-7-yl)vinyl)benzoic acid
(11),[31] that demonstrated slightly higher RXR activation in
Caco-2 colon cancer cells and possessed a slightly lower Kd
RXR-selective molecule (rexinoid) SNuRMs have been recent
targets for medicinal chemistry, as selective RXR activation
versus RAR appears to confer chemotherapeutic effects[8] in
a number of cancers without inciting concomitant negative
side effects from RAR interaction.[9] After extensive synthesis[10]
of molecules modeled in part on the endogenous 9-cis-RA
(shown below), researchers at Ligand Pharmaceuticals Inc.,
demonstrated a highly selective RXR agonist, 4-[1-(3,5,5,8,8-
pentamethyltetralin-2-yl)ethenyl]benzoic acid (1),[11] commonly
named bexarotene. A disilabexarotene compound 2,[12] mod-
eled on 1 but substituting two silicon atoms for two carbon
atoms in the aliphatic ring system, demonstrated similar RXR
specific agonism.
Compound 1 has been FDA
approved to treat cutaneous T-
cell lymphoma (CTCL), has re-
cently been employed off-label
to treat lung cancer,[13] and has
been analyzed as a treatment for
breast cancer,[14] colon cancer,[15]
and other uncontrolled cell pro-
liferation diseases, because pro-
moted expression of RXR regu-
lated genes appears to slow or
arrest cell proliferation as well as
predisposing cancerous cells to
apoptosis in the presence of
a
chemotherapeutic agent.[14]
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than 1. Thus, our recent studies have systematically examined
by modeling, synthesis, and in vitro biological evaluation eight
novel analogues of 11 bearing different or additional halogen
atoms, exemplified by compounds 12–19.
Herein we report the synthesis of compounds 12–19 and
evaluate their potency and activity in biologically relevant sys-
tems including mammalian 2-hybrid (M2H) assays, RAR- and
RXR-response element (RARE and RXRE) transcriptional activa-
tion assays in cultured human cell lines, as well as in mutage-
nicity and apoptosis assays. We assessed these novel ana-
logues in comparison with compound 1 as well as its ketone
analogue 20.
tended to vacate the hydrophobic pocket, disrupting interac-
tions with the hydrophobic ring system of the ligand. This dis-
ruption led to a rotation of the ring system away from Ile268,
weakening the hydrophobic interactions with this residue. The
hydrophobic ring system was accommodated in a large hydro-
phobic pocket, with interactions between the ligand and
Ile345, Ile268, and Leu436.
Given the highly favorable docking energies of the class of
ortho-halogenated compounds, and the relative synthetic ac-
cessibility of this class, we decided to synthesize and test com-
pounds 12–18, as well as compounds 19–20. Ortho-halogenat-
ed compounds 12–17 were found to be within the best 20
binders for the library, and the
binding of compound 18 was
also predicted to be more favor-
able than bexarotene. The calcu-
lated relative binding free
energy for compounds 12–20 as
predicted by the docking studies
are shown in Figure 1. These cal-
culated binding free energies
were merely used to score the li-
gands; reported values are rela-
tive to the calculated binding
free energy of docked bexaro-
tene, with negative numbers in-
dicating better binding. An ex-
Results and Discussion
ample of a low-energy docking pose for compound 18 is
shown in Figure 2.
Molecular modeling
Computational docking studies were performed to help guide
the selection of ligands for synthesis. Analysis of the top bind-
ers in a large library of bexarotene-like analogues showed
a high preference for electron withdrawing groups ortho to
the carboxylic acid of the phenyl group; nearly all the top
binders in the docking studies contain a halogen or a nitro
group in this position. Structural comparisons of the docked
poses showed that the torsional angle between the phenyl
ring and the bridge head changed by ~15 to 308 in the ortho-
halogenated compounds relative to the non-halogenated com-
pounds. The effect of this rotation was a strengthening of the
interactions between Ile268 and the hydrophobic portion of
the ligand, as measured by decreased distances in the poses.
Halogenation did not change hydrogen bonding with Arg316,
however. The degree of rotation was inversely related to the
size of the halogen atom, with fluorine incurring the largest ro-
tation and stabilization of the hydrophobic group, and iodine
Chemistry
The synthesis of compounds 12–19 started with the radical di-
bromination of commercially available 3-chloro-4-methylben-
having
a smaller rotation and stabilization. Addition of
a second halogen amplified the effect. Replacement of the
phenyl group by a heteroatomic ring generally decreased
binding by disrupting interactions between the ring and
Leu309, Ala271, and Leu326. In the docking studies ligands
with methylene and cyclopropane bridge heads were predict-
ed to bind more favorably than ligands with ketone bridge
heads. Structural analyses of the docked poses showed that
methylene and cyclopropane bridge heads were bound in
a small hydrophobic pocket, while the ketone bridge head
Figure 1. Docking results for compounds 12–20; calculated binding free en-
ergies are relative to the calculated binding free energy of docked bexaro-
tene with negative numbers indicating better binding. Triangles represent
docks to 1MVC, circles to 1H9U; open symbols represent AutoDockTool
charges, and closed symbols OpenBabel charges. Compounds are listed
from left to right by increasing docking free energies averaged over the vari-
ous protocols.
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and 36 were converted smoothly to 38 and 39 at room tem-
perature and atmospheric pressure hydrogen, benzyl ester 37
required a higher temperature of 708C and higher pressure of
hydrogen (10–15 bar) that was safely achieved[36] to give quan-
titative yield of 40. The carboxylic acids 38-40 were then quan-
titatively converted into the acid chlorides 41–43 with thionyl
chloride (Scheme 1).[32]
A slightly different route was taken to prepare the iodinated
analogues 16 and 17. 4-(Methoxycarbonyl)-3-aminobenzoic
acid (44) was treated with sodium nitrite and hydrochloric acid
followed by potassium iodide to give 4-(methoxycarbonyl)-3-
iodobenzoic acid (45)[37] in 77% yield, and acid 45 was convert-
ed into acid chloride 46 with thionyl chloride (Scheme 2).
Finally, 2,5-dimethyl-2,5-hexanediol was converted into 2,5-
dichloro-2,5-dimethylhexane (47),[11,38] in 73% yield by treat-
ment with concentrated hydrochloric acid, and the dichloride
47 was reacted with toluene and catalytic aluminum chloride
to give 1,2,3,4-tetrahydro-1,1,4,4,6-pentamethylnaphthalene
(48)[11,31] in 94% yield.
With compound 48 in hand, acid chlorides 41–43 and 46
were converted into ketones 49–52 according to the general
method of Boehm and co-workers.[11] Iodo-ketone methyl ester
51 was observed to possess a small percentage (~7%) of the
chloro-ketone methyl-ester 49 by 1H NMR analysis, and the
iodine atom may be labile under reflux conditions with alumi-
num trichloride. Compounds 49–52 were either saponified
with potassium hydroxide in methanol, followed by acidic
Figure 2. Low-energy docking pose for compound 18.
zoic acid (21) and 3-bromo-4-methylbenzoic acid (22) to give
dibromides 23 and 24, respectively, which were smoothly con-
verted into aldehydes 25 and 26 upon treatment with silver ni-
trate in ethanol and water according to the method reported
by Kishida and colleagues.[32] We initially envisioned the syn-
thesis of the 3,5-difluoroformyl-
benzoic acid (27)[33] to follow the
same route as used for alde-
hydes 25 and 26, beginning
with the known 3,5-difluoro-4-
methylbenzoic acid.[34] However,
we chose to implement a three-
step, one-pot Bouveault alde-
hyde synthesis[35] in which 3,5-di-
fluorobenzoic acid (28) was
treated with tert-butyl lithium,
followed by addition of dime-
thylformamide and hydrolysis
with hydrochloric acid to give 27
in 36% yield according to the
method of Anderson and co-
workers, instead.[33] Continuing
with the general method of Kish-
Scheme 1. Reagents and conditions: a) NBS, cat. BPO, CCl4, 858C (reflux), 36 h, 100%; b) AgNO3, EtOH, H2O, 558C,
45 min, 100%; c) 1. tBuLi, À788C, 30 min; 2. DMF, À788C, 1 h, then RT, 16 h; 3. HCl, 36% over three steps; d) NaH,
BnBr, DMF, RT, 5 h, 93–99%; e) NaClO2, sulfamic acid, RT, 1 h, 82–90%; f) 1. SOCl2, 848C, 1 h; 2. MeOH, Et3N, RT, 1 h,
ida et al.,[32] the carboxylic acid
aldehydes 25–27 were benzyl-
protected by treatment with 78–87% over two steps; g) H2, Pd/C, RT, 24–48 h, 85–96%; h) SOCl2, 858C, 1 h, 100%.
sodium hydride and benzyl bro-
mide to give benzyl ester alde-
hydes 29–31, respectively. The ester aldehydes 29–31 were
oxidized with sodium chlorite to give the benzyl ester acids
32–34, respectively, whose carboxylic acid moieties were con-
verted into methyl esters 35–37 by treatment with thionyl
chloride followed by methanol.[32] The benzyl esters of 35–37
were converted into carboxylic acids 38-40 by treatment with
10% palladium on carbon and hydrogen, however, while 35
Scheme 2. Reagents and conditions: a) 1. HCl, NaNO2, RT, 30 min; 2. KI, RT,
1 h, 40% over two steps; b) SOCl2, 858C, 1 h, 100%.
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RXR-Selective Agonists
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work-up, to give analogues 13, 15, 17, and 19 respectively, or
they were treated with triphenylphosphine methylide to give
alkenes 53–56, respectively. The bromo-ketone 15 also pos-
sessed minor amounts of unidentifiable impurities that could
not be removed by chromatography or crystallization. Alkenes
53–56 were then saponified with potassium hydroxide in
methanol, followed by acidic work-up, to give analogues 12,
14, 16, and 18, respectively (Scheme 3). While the iodo-ketone
Figure 3. a) The X-ray crystal structures of bexarotene analogues 12, 14, and
16 shown without hydrogen atoms, for clarity, with thermal ellipsoids at the
50% probability level. b) The X-ray crystal structures of bexarotene ana-
logues 52 and 18 shown without hydrogen atoms, for clarity, with thermal
ellipsoids at the 30% probability level. Compound 18 displayed twist-iso-
merism in the aliphatic ring. Hence, one twist isomer has been displayed.
with about 80, 60, and 20%, respectively, of the parent com-
pound’s efficiency independent of the cell line. They were also
found to be significantly better than the ethanol control vehi-
cle (P<0.05 for all, using one-tailed heteroscedastic t test).
Compound 18, however, was found to induce receptor binding
and homodimerization better than that of the parent com-
pound 1 to a degree considered statistically significant. More-
over, relative to compound 1, 18 was ~1.5-fold more potent in
its ability to induce RXR homodimerization than 1 in the Caco-
2 cells and ~3.5-fold better in HCT-116 cells (P<0.05 for all,
using one-tailed heteroscedastic t test). These results further
support that compounds modeled after 1 can be successfully
synthesized to possess RXR binding ability[31] and agonistic
properties.
Scheme 3. Reagents and conditions: a) 48, AlCl3, 558C (reflux), 15 min, 58–
89%; b) 1. KOH, MeOH, 858C (reflux), 1 h, 40–81%; 2. HCl; c) Ph3PCH3Br,
nBuLi, THF, RT, 1 h, 32–77%; d) 1. KOH, MeOH, 858C (reflux), 1 h, 34–91%;
2. HCl.
acid 17 contained ~9% of the chloro-ketone acid 13 and
could not be purified by column chromatography or attempt-
ed crystallization, the minor amount of chloro-alkene acid 12
could be removed from iodo-alkene 16 by crystallization from
ethyl acetate.
Novel analogues of 1 are able to direct RXR/RXRE
homodimer-mediated transcription
The X-ray crystal structures of compounds 12, 14, and 16
are shown in Figure 3a and the X-ray crystal structures of com-
pounds 18 and 52 are shown in Figure 3b.
The mammalian two-hybrid assay is useful as an initial screen
for RXR agonist induced homodimerization because of its ac-
cessibility, speed and sensitivity. However, because this assay
employs a system that uses a synthetic binding domain (BD)
and synthetic activating domain (AD), it is possible that within
this artificial context the RXR–agonist complex may have an al-
tered ligand or transcriptional co-activator affinity. Thus, it is
important to test our collection of potential RXR agonists for
the ability to mediate transcription in a more natural setting.
Hence, a second screening protocol included the transfection
of both Caco-2 and HCT-116 cells with human RXRa and an au-
thentic RXRE from the naturally occurring responsive element
in the rat cellular retinol binding protein II gene[39] linked to
a luciferase reporter gene. The results in Figure 5 demonstrate
that compounds 12, 14, 18, and 19 are able to activate RXR
homodimer-mediated transcription significantly better than
that of the ethanol vehicle (for compounds 12, 14, and 18 in
Caco-2 cells, using a one-tailed heteroscedastic t test: P<0.05;
Biological assays and rationale
A mammalian two-hybrid assay demonstrates that several
novel analogues bind RXR in an agonist fashion
Biological evaluation of the synthetic analogues described
above (compounds 12–19) was first carried out in a mammalian
two-hybrid assay in human colon cancer (Caco-2) cells then re-
peated in a different colorectal carcinoma line (HCT-116) (Fig-
ure 4a and b, respectively). This assay tests the ability of the
analogue to bind to the recombinant human RXR receptor and
induce homodimerization as measured by luciferase output.
Four compounds were identified in this initial evaluation
whose agonist activity ranged from 20 to 400% of the binding
of compound 1 in the two separate cell lines. More specifically
12, 14, and 16 are able to bind and mediate homodimerization
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sess EC50 values that mirror the results of the mam-
malian two-hybrid analysis in Figure 4, and the RXRE-
based assays in Figure 5.
Analysis of RAR agonist activity
Because compound 1 is known to have some “residu-
al” retinoic acid receptor (RAR) agonist activity[31] we
evaluated this group of analogues for activation of
this closely related nuclear receptor. This assay uses
the expression of human RAR and a retinoic acid re-
sponsive element (RARE)-luciferase reporter gene,
and it demonstrates (Table 2) that compounds 12,
14, and 18 are similar to 1 (P>0.05 for all, using
a
one-tailed heteroscedastic t test). Table 2 also
shows that 16 and 19 possess significantly lower RAR
binding affinity (P<0.05 for both, using a one-tailed
heteroscedastic t test). all-trans-retinoic acid was used
as the positive control in this experiment because it
is the endogenous ligand for RAR. Taken together,
these results not only further support our previous
findings[31] that variation of 1 with a halogen atom
on the aromatic that bears the carboxylic acid may
decrease the activation of RAR (analogues 16 and 19)
or increase its capacity to bind and activate RXR
(compound 18), but they also strongly suggest a spe-
cific periodic trend for the substitution of a proton
that may relate to the analogue’s degree of agonist
activity.
Figure 4. Evaluation of potential RXR-selective agonists via a mammalian two-hybrid
assay in two different types of human colon cancer cells, a) Caco-2 and b) HCT-116. Both
cell lines were transfected with pCMV-BD-hRXR binding domain vector (BD), pCMV-AD-
hRXR activation domain (AD), pFR-Luc reporter gene containing BD binding sites, and
a renilla control plasmid. Cells were transfected for 7 h using a liposome-mediated trans-
fection protocol then exposed to either the ethanol vehicle or 10À7 m compound 1 or
the indicated analogue. After 24 h the cells were lysed and a luciferase assay was com-
pleted. Analogue-dependent RXR binding and homodimerization, as measured by lucifer-
ase output, was compared with the parent compound 1 (value set to 1.0).
Apoptosis in a CTCL system
As previously reported,[31] bexarotene and several of
its analogue are capable of inducing apoptosis. We
for these compounds in HCT-116 cells using a one-tailed heter-
were interested in determining the pro-apoptotic ability of
these new analogues in comparison with compound 1. As
compound 1 has been effectively employed in the treatment
of CTCL because it induces apoptosis in the T-lymphocyte, we
assayed HuT-78 lymphocytes treated with compound 1 or ana-
logues for caspase 3 and 7 activity, a hallmark of apoptosis,
and compared caspase activity to cells treated with ethanol ve-
hicle and sodium butyrate (apoptotic positive control)
oscedastic t test: P<0.01; and for compound 19 in both cell
lines, using a one-tailed heteroscedastic t test: P<0.01).
In the Caco-2 cells, 16 was a weak agonist, while 17 was not
able to activate transcription when compared with ethanol,
but both analogues did display significant activity in the HCT-
116 colorectal carcinoma (using a one-tailed heteroscedastic
t test: P<0.01 for 16 and P<0.001 for 17).
Importantly, compounds 12, 14, 16 and 18 displayed activity
in both the mammalian two-hybrid assay (Figure 4) and the
RXRE assay (Figure 5), thus revealing that both assays are not
only valid, but generate consistent and complementary data
when evaluating RXR agonists.
Table 1. Determination of EC50 values.[a]
Compd
EC50 [nm]
Bexarotene 1
55Æ6
90Æ14
150Æ18
280Æ34
34Æ6
12
14
16
18
19
Determination of ligand–receptor binding affinity
To determine the relative binding affinity and effectiveness of
our most active analogues, a mammalian two-hybrid assay was
performed with ligand concentrations ranging from 10ꢁ
10À10 m up to 0.5ꢁ10À5 m and EC50 values were calculated
(Table 1). Notably, the difluorobexarotene analogue (18) has an
EC50 value of 34Æ6 nm in HCT-116 cells versus an EC50 value of
55Æ6 nm for bexarotene (1). All of the other analogues pos-
550Æ67
[a] EC50 values were determined from full dose–response curves ranging
from 10À10 to 10À5 m in transfected HCT-116 cells using an RXR mammali-
an two-hybrid system as described in the Experimental Section. Values
represent the meanÆSD of n=2 independent experiments with triplicate
samples in each.
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Figure 6. Apoptosis analysis in a CTCL cell line. HuT-78 cells were treated for
48 h with analogue, ethanol vehicle, or sodium butyrate as a positive con-
trol. Cells were analyzed for apoptosis via a caspase assay (Promega Cas-
pase-Glo 3/7 assay) according to manufacturer’s instructions. Data is an aver-
age of two independent experiments with triplicate samples in each and
plotted as a percentage of sodium butyrate activity (set at 100%).
Conclusions
Figure 5. Detection of potential RXR agonists via an RXRE-luciferase based
system using human colon cancer cells, a) Caco-2 and b) HCT-116. Both cell
lines were transfected with hRXRa, an RXRE luciferase reporter gene, renilla
control plasmid, and carrier DNA (pTZ18U). Cells were transfected for 7 h
using a liposome-mediated transfection protocol then exposed to either the
ethanol vehicle or 10À7 m compound 1 or the indicated analogue. After 24 h
the cells were lysed and a luciferase assay was completed. Analogue-depen-
dent, RXR-mediated transcription, as measured by luciferase output, was
compared with the parent compound 1 (value set to 1.0).
Here we report the modeling, synthesis, and biological evalua-
tion of several analogues of compound 1, in an extension of
our earlier work.[31] We have shown that the addition of two
fluorine atoms ortho to the carboxylic acid of 1 increases the
ability of analogue 18 to activate RXR. We have identified sev-
eral new halogenated analogues of 1 that have apparent bind-
ing and biological activity similar to the parent compound,
and even follow a periodic trend, with one (compound 18)
that capitalizes on the finding that adding one fluorine ortho
to the carboxylic acid of 1 increases binding and activation of
RXR.[31] With the fact that several RXR selective agonists are
being explored to treat many conditions through biological
pathways impacted by RXR, now including the demonstrated
up-regulation of the apoE gene and the facilitated clearance of
plaques by 1 in mouse models of Alzheimer’s disease,[40] there
is motivation to develop new RXR agonists. Our results indi-
cate that novel analogues of 1 that substitute halogen atoms
on the aromatic ring bearing the carboxylic acid can likely
serve as effective, and perhaps more potent, ligands for RXR,
which may also have decreased RAR agonist activity (Table 2);
thus, these compounds may also possess less detrimental side
effects in cutaneous T-cell lymphoma patients.
Table 2. Quantitation of RAR agonist activity.[a]
Compd
Agonist activity [%]
(100 nm)
(1 mm)
Bexarotene 1
21Æ4
13Æ2
5Æ1
5Æ1
8Æ1
4Æ1
19Æ3
14Æ2
5Æ1
5Æ1
9Æ2
8Æ2
12
14
16
18
19
[a] RAR agonist activity was derived from an RAR/RARE reporter system in
transfected HEK-293 cells treated with test compound or all-trans-retinoic
acid (RA) at either 100 nm or 1 mm. RAR agonist activity is defined as the
activity with test compound (or reference 1) divided by the activity with
all-trans-RA expressed as a percentage. Values represent the meanÆSD
of n=3 independent experiments with triplicate samples in each.
Experimental Section
(Figure 6). Similar to previously published results,[31] bexarotene
(1) and all of the analogues were better than vehicle control at
inducing apoptosis (P<0.01 using one-tailed heteroscedastic
t test), after a 48 hour treatment period in our CTCL cells.
Docking Studies
Docking studies using AutoDock 4.2[41] were performed using the
X-ray structures of human RXRa in complex with BMS 649[42] and
RXRb in complex with LG100268,[43] PDB access codes 1MVC and
1H9U, respectively. In both cases, the Arg316 and Ile268 protein
residues (numbering as in 1MVC) were treated flexible. Arg316 was
selected to enable hydrogen bonding with carboxylate groups on
the phenyl moiety, an important interaction identified in earlier
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studies.[11,31] Ile268 was selected, as structural overlays of 33 differ-
ent ligand-bound RXR structures in the PDB showed large motions
of Ile268, and in all cases Ile268 made significant interactions with
hydrophobic portions of the ligands. Atomic charges generated by
AutoDockTools[41] were frequently overpolarized for nitro groups
(leading to a net negative charge on the nitro group), while charg-
es generated by OpenBabel 2.3.0[44] did not have this artifact.
Therefore, all docks were performed with both charge models, and
results for nitro-compounds were omitted for the AutoDockTools-
generated charges. Docking was performed with the Lamarckian
genetic algorithm using a maximum of 25ꢁ106 energy evaluations
per docking. The number of docks was set to 250 for three tor-
sions; this number was increased by 50 for each additional torsion,
up to a maximum of 400 for six or more torsions. The docking was
performed with a large library of bexarotene-like analogues. These
analogues differed in substituents on the phenyl ring (including
halogenated, carboxylated, hydroxylated and nitrated rings) and
fused phenyl ring (including methylated, aminated, nitrated, and
halogenated rings), as well as changes in the identity of the bridge
head between the ring systems (including methylene, ketone, and
cyclopropane bridge heads, as well as the absence of a bridge
head), and the identity of the aliphatic part of the fused ring
system. Calculated AutoDock binding free energies were used to
score the ligands.
RAR/RARE-agonist activity assay: An embryonic kidney cell line,
HEK-293, was used for the RARE transcription assay. The cells were
plated at a concentration of 7ꢁ104 cells per well and maintain as
described above. The cells were allowed to incubate over night to
ensure attachment to the plate surface. The transfection protocol
called for 20 ng of renilla null control plasmid to monitor transfec-
tion efficiency, 30 ng of pTZ18U carrier DNA plasmid, 50 ng of the
pCMX-human RARa expression vector, and 250 ng of pTK-DR5(X2)-
Luc plasmid. Specifics pertaining to this RARE-containing reporter
vector have been described previously as well as the sequence of
the double RARE.[45] The cells were incubated for 7 h and then
treated with ethanol, all-trans-retinoic acid, or analogues at final
concentration ranging from 10À6 m to 10À7 m for 24 h. After the in-
cubation period cell were lysed and the same luciferase assay was
completed that was previously described.
Apoptosis assay: Apoptotic activity was assessed by the Caspase-
Glo 3/7 Assay (Promega, Madison, WI) according to the manufac-
turer’s instructions. The Caspase-Glo 3/7 Assay is based on the
cleavage of the DEVD sequence of a luminogenic substrate by cas-
pases 3 and 7 which results in a luminescent signal. HuT-78
(human T-cell lymphoma) cells were distributed (1ꢁ104 cells per
well) in white-walled 96-well microplates (Corning, NY) in 100 mL of
medium and incubated with 500 mm sodium butyrate (NaBu),
10 mm bexarotene (Bex) or rexinoid analogues for 48 h. The Cas-
pase-Glo 3/7 Reagent was then added to each well and incubated
for an additional 1 h at RT. The luminescence was measured in a lu-
minometer (Safire2, Tecan, US). NaBu, a known inducer of apopto-
sis in HuT-78, was used as a positive control. Each treatment group
was dosed in triplicate, and at least two independent experiments
were performed with triplicate samples in each. Numbers were
standardized to sodium butyrate (set at 100%).
Biological evaluation
Mammalian two-hybrid assay: Caco-2 colorectal carcinoma cells
were plated overnight at 7ꢁ104 cells per well in a 24 well plate
and kept in minimum essential media (MEM) (Invitrogen, Carlsbad
CA) enhanced with 20% fetal bovine serum (FBS) (Invitrogen),
1 mm sodium pyruvate (Invitrogen), 100 mgmLÀ1 streptomycin, and
100 UmLÀ1 penicillin. HCT-116 colorectal carcinoma cells were
plated overnight at 7ꢁ104 cells per well in a 24 well plate and
kept in DMEM enhanced with 10% FBS (Invitrogen), 1 mm sodium
pyruvate (Invitrogen), 100 mgmLÀ1 streptomycin, and 100 UmLÀ1
penicillin. Both cell lines were co-transfected using a human RXR
binding domain vector, a hRXR activation domain (AD), a luciferase
reporter gene containing BD binding sites, and a renilla control
plasmid. A liposome-mediated transfection was completed accord-
ing to the manufacturer’s protocol using 2 mL per well of Express-
In transfection reagent (Thermo Fisher Scientific, Lafayette, CO)
and allowed to incubate for 7 h. The cells were then treated with
Mutagenicity: We tested the compounds for mutagenicity as in
Wagner et al.[31] None of the compounds are mutagenic. This assay
used a yeast strain, D7, that is genetically engineered to change
phenotype upon a genotype change.[46] We used this strain to test
the mutagenicity of the compounds by solubilizing the com-
pounds in DMSO and performing a dose–response curve with the
highest concentration being 0.15% w/v comparing with DMSO
control for mutagenicity, scored as a phenotype change on agar
plates.[47]
Chemistry
ethanol vehicle, 1, or analogues at a final concentration of 10À7
m
and incubated for 24 h. The amount of rexinoid activity was mea-
sure by luciferase output using a dual-luciferase reporter assay
system according to the manufacturer’s protocol (Promega, Madi-
son, WI) in a Sirus FB12 luminometer (Berthold Detection Systems,
Zylux Corporation, Huntsville, AL). Several independent assays
were conducted with triplicate samples for each treatment group.
Instrumentation: A 400 MHz Bruker spectrometer was used to ac-
1
quire H NMR and 13C NMR spectra. Chemical shifts (d) are listed in
ppm against residual non-deuterated solvent peaks in a given deu-
terated solvent (e.g., CHCl3 in CDCl3) as an internal reference. Cou-
pling constants (J) are reported in Hz, and the abbreviations for
splitting include: s, single; d, doublet; t, triplet; q, quartet; p,
pentet; m, multiplet; br, broad. All 13C NMR spectra were acquired
on a Bruker instrument at 100.6 MHz. Chemical shifts (d) are listed
in ppm against deuterated solvent carbon peaks as an internal ref-
erence. High-resolution mass spectra were recorded using either
a JEOL GCmate(2004), a JEOL LCmate(2002) high-resolution mass
spectrometer or an ABI Mariner (1999) ESI-TOF mass spectrometer.
HPLC traces were obtained on an Agilent 1100 LC with a Phenom-
enex Kinetex C18 10 cm by 2.1 mm column with 2.6u solid core
particles.
RXRE-mediated transcription assay: The RXRE assays were complet-
ed using both Caco-2 and HCT-116 cells plated at 7ꢁ104 cells per
well in a 24 well plate and maintained as described above. The
cells were co-transfected using 250 ng of RXRE-luciferase reporter
gene (RXRE from the naturally occurring responsive element in the
rat cellular retinol binding protein II gene), 20 ng of the renilla con-
trol plasmid, 50 ng of human pSG5-RXRa, and 100 ng pTZ18U car-
rier DNA plasmid and 2 mL per well of Express-In was again used
for the liposome mediated delivery. The cells were incubated for
7 h post-transfection and then treated with ethanol, or 10À7 m of
either the parent compound or the indicated analogue. After a 24-
hour incubation period the amount of retinoid activity was mea-
sured using the same luciferase assay described above.
General procedures: Tetrahydrofuran, methylene chloride, diethyl
ether, and benzene were dried by filtration through alumina ac-
cording to the procedure described by Grubbs.[48] Removal of vola-
tile solvents transpired under reduced pressure using a Bꢂchi
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rotary evaporator and is referred to as removing solvents in vacuo.
Thin-layer chromatography was conducted on pre-coated
(0.25 mm thickness) silica gel plates with 60 F254 indicator (Merck).
Column chromatography was conducted using 230–400 mesh
silica gel (E. Merck reagent silica gel 60). All tested compounds
were analyzed for purity by combustion analysis through Columbia
Analytical Services (formerly Desert Analytics in Tucson, AZ, USA)
and were found to be >95% pure.
164.4, 135.2, 134.8, 134.7, 132.4, 132.3, 132.2, 128.7, 128.6, 127.6,
67.6 ppm; IR (neat): n˜ =2964, 1724, 1685, 1603, 1557, 1484,
1455 cmÀ1
;
LC–FAB-MS: m/z [M+ +H] calcd for C15H12O4Cl:
291.0424, found: 291.0434.
4-Benzyl 1-methyl 2-chlorobenzene-1,4-dioate (35): Compound
35 was synthesized according to the method of Kishida and co-
workers.[32] To a 100 mL round-bottom flask charged with com-
pound 32 (5.5 g, 18.9 mmol) was added SOCl2 (16.0 mL, 220 mmol)
and the reaction solution was held at reflux for 1 h in an oil bath
at 848C. The reaction solution was cooled to RT and the excess
SOCl2 was removed in vacuo to give crude 4-chlorocarbonyl-2-
chlorobenzoic acid benzyl ester. The crude 4-chlorocarbonyl-2-
chlorobenzoic acid in dry toluene (8 mL) was added dropwise to
a solution of Et3N (5.2 mL, 37 mmol) in MeOH (53 mL, 1.3 mol) over
10 min. The reaction solution was stirred 1 h and poured into 1n
HCl (150 mL) and extracted with EtOAc (80 mL, thrice). The com-
bined organic extracts were washed with brine, dried over Na2SO4,
and removed in vacuo to give crude 35. Crude 35 was purified by
column chromatography (150 mL SiO2, hexanes/EtOAc 95:5) to
Benzyl-3-chloro-4-formylbenzoate (29): Compound 29 was syn-
thesized according to the methods of Kishida and co-workers.[32] To
a 500 mL round-bottom flask charged with 3-chloro-4-methylben-
zoic acid (21) (3.24 g, 19.0 mmol) was added NBS (8.00 g,
44.9 mmol), benzoyl peroxide (0.23 g, 0.95 mmol), and CCl4
(37 mL). The reaction solution was heated at reflux under magnetic
stirring for 36 h, cooled to RT, and solids were filtered and washed
with CCl4 (~20 mL). The filtrate solvent was removed in vacuo and
the crude 4-(dibromomethyl)-3-chlorobenzoic acid (23) was dried
on high vacuum and used without further purification. To
a 500 mL round-bottom flask charged with crude 23 (6.23 g,
19.0 mmol) was added EtOH (48 mL), and a solution of AgNO3
(6.64 g, 39.1 mmol) in warm water (9 mL) was added dropwise
while the reaction solution was stirred in an oil bath preheated to
50–558C. Upon addition of the AgNO3 solution, a green precipitate
formed. After stirring at 508C for 45 min, the reaction solution was
cooled to RT and filtered to remove the green precipitate. The fil-
trate solvent was concentrated in vacuo, extracted with EtOAc, and
the combined organic extracts were washed with water and brine,
dried over Na2SO4 and removed in vacuo to give crude 3-chloro-4-
formylbenzoic acid (25) (3.51 g, 100%) that was used without fur-
ther purification. To a 500 mL round-bottom flask charged with 25
(3.51 g, 19.0 mmol) was added dry dimethylformamide (37 mL) and
a 60 wt% suspension of NaH in mineral oil (0.93 g, 23 mmol) in
small aliquots over 20 min. The reaction solution was stirred an ad-
ditional 20 min, and benzyl bromide (2.8 mL, 23 mmol) was added
to the red heterogeneous solution. After stirring 5 h, the reaction
solution had become homogeneous, and it was poured into 1n
HCl (100 mL), extracted with EtOAc (2ꢁ100 mL), and the combined
organic extracts were washed with saturated NaHCO3 (75 mL) and
brine, dried over Na2SO4, and removed in vacuo to give crude 29.
Crude 29 was purified by column chromatography (150 mL SiO2,
hexanes/EtOAc 4:1) to give 29 (5.2 g, 99%) as a colorless oil:
1H NMR (400 MHz, CDCl3): d=10.52 (s, 1H), 8.15 (dd, J=8.0, 1.6,
1H), 7.97–8.04 (m, 2H), 7.37–7.48 (m, 5H), 5.39 ppm (s, 2H); IR
(neat): n˜ =2968, 2855, 2656, 2560, 1724, 1687, 1605, 1556,
1485 cmÀ1; GC–MS: m/z [M+] calcd for C15H11O3Cl: 274.0397, found:
274.0390.
1
give pure 35 as a white solid (5.05 g, 87%), mp: 46–488C: H NMR
(400 MHz, CDCl3): d=8.12 (d, J=1.6, 1H), 7.98 (dd, J=8.0, 1.6, 1H),
7.85 (d, J=8.0, 1H), 7.36–7.46 (m, 5H), 5.38 (s, 2H), 3.95 ppm (s,
3H); 13C NMR (100.6 MHz, CDCl3): d=165.5, 164.4, 135.3, 134.0,
133.8, 133.7, 132.0, 131.2, 128.7, 128.6, 128.4, 127.6, 67.4, 52.7 ppm;
IR (neat): n˜ =3033, 2958, 1735, 1716, 1560, 1498, 1482 cmÀ1; GC–
MS: m/z [M+] calcd for C16H13O4Cl: 304.0502, found: 304.0498.
4-(Methoxycarbonyl)-3-chlorobenzoic acid (38): Compound 38
was synthesized according to the methods of Kishida and co-work-
ers.[32] A 3-neck 250 mL round-bottom flask charged with 35
(4.94 g, 16.2 mmol), 10% Pd/C (0.499 g), EtOH (28.0 mL), and EtOAc
(28.0 mL) was evacuated and back-filled with hydrogen gas from
a balloon three times, and the reaction solution was allowed to stir
under hydrogen at RT overnight. The reaction solution was filtered
through Celite, and the solvents were removed in vacuo to give
crude 38 (2.97 g, 85%) as a white crystalline solid that was used
without further purification. A small sample of crude 38 was puri-
fied by recrystallization from hot EtOAc to give pure 38, mp: 156–
1
1578C: H NMR (400 MHz, [D6]DMSO): d=13.64 (brs, 1H), 7.99 (d,
J=1.6, 1H), 7.95 (dd, J=8.0, 1.6, 1H), 7.89 (d, J=8.0, 1H),
3.89 ppm (s, 3H); 13C NMR (100.6 MHz, [D6]DMSO): d=165.4, 165.1,
134.9, 133.7, 131.8, 131.2, 130.9, 128.0, 52.8 ppm; IR (neat): n˜ =
2961, 2824, 2545, 1717, 1687, 1557, 1488 cmÀ1; LC–APCI-MS: m/z
[M+] calcd for C9H7O4Cl: 214.0033, found: 214.0027.
Methyl 2-chloro-4-(1-(3,5,5,8,8-pentamethyl-5,6,7,8-tetrahydro-
naphthalen-2-yl)carbonyl)benzoate (49): Compound 49 was syn-
thesized according to the method of Boehm and co-workers.[11]
Methyl 4-(chlorocarbonyl)-2-chlorobenzoate (41) was synthesized
by refluxing 4-(methoxycarbonyl)-3-chlorobenzoic acid (38) (1.35 g,
6.29 mmol) in SOCl2 (10.0 mL, 137 mmol) in a 100 mL one-neck
round-bottom flask fitted with a water-cooled reflux condenser.
Excess SOCl2 was removed in vacuo to give crude 41 as an off-
white solid, and this solid was dissolved in dry benzene (~20 mL)
and evaporated to dryness three times to remove residual SOCl2.
The acid chloride 41 was dried on high vacuum to remove residual
benzene. To a 2-neck, 50 mL round-bottom flask equipped with
a reflux condenser and magnetic stir-bar was added 48 (1.38 g,
6.82 mmol) followed by a solution of crude acid chloride 41
(6.29 mmol) in CH2Cl2 (15 mL). AlCl3 (2.0 g, 15 mmol) was added to
the reaction solution at RT slowly, with stirring, and the reaction so-
lution turned from colorless to red accompanied by the evolution
of gas and heat. The reaction was stirred for 5 min then heated at
reflux for 15 min. The reaction was judged to be complete by TLC,
4-((Benzyloxy)carbonyl)-2-chlorobenzoic acid (32): Compound 32
was prepared according to the method of Kishida and co-work-
ers.[32] To a 100 mL round-bottom flask charged with 29 (5.22 g,
19.0 mmol), sulfamic acid (1.86 g, 19.2 mmol), water (20 mL), and
ACN (15 mL) was added a solution of 80% NaClO2 (1.79 g,
19.8 mmol) in water (10 mL). After stirring for 1 h, the reaction so-
lution was poured into saturated Na2SO3 (25 mL) and 1n HCl
(50 mL), and the resulting solution was extracted with EtOAc
(50 mL, thrice). The combined organic extracts were washed with
brine, dried over Na2SO4, and removed in vacuo to give crude 32
(4.97 g, 90%) that was used without further purification. A small
sample was purified by column chromatography (25 mL SiO2, hex-
anes/EtOAc 1:1) to give pure 32 as a white powder, mp: 120–
1228C: 1H NMR (400 MHz, CDCl3): d=10.71 (brs, 1H), 8.17 (d, J=
1.6, 1H), 8.05 (d, J=8.0, 1H), 8.02 (dd, J=8.0, 1.6, 1H), 7.36–7.47
(m, 5H), 5.40 ppm (s, 2H); 13C NMR (100.6 MHz, CDCl3): d=170.1,
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and the solution was poured into an ice solution (25 mL) acidified
with a 20% HCl solution (8 mL) and EtOAc was added (13 mL). The
aqueous and organic layers were separated, and the aqueous layer
was extracted with EtOAc (2ꢁ15 mL). The combined organics were
washed with water and brine, dried over Na2SO4, filtered and con-
centrated to give crude 49. Crude 49 was purified by column chro-
matography (250 mL SiO2, hexanes/EtOAc 95:5 to 92.5:7.5) to give
13C NMR (100.6 MHz, CDCl3): d=170.5, 147.8, 146.8, 144.7, 142.5,
137.1, 135.0, 132.6, 132.5, 129.3, 128.2, 128.0, 126.5, 124.9, 118.2,
35.1, 34.0, 33.9, 31.9, 31.8, 19.9 ppm; IR (neat): n˜ =2958, 1694,
1596, 1488 cmÀ1; LC–APCI-MS: m/z [M+ +H] calcd for C24H28O2Cl:
383.1778, found: 383.1778; Anal. calcd for C24H27O2Cl: C 75.28; H
7.11; Cl 9.26, found: C 75.20; H 6.93; Cl 9.60.
2-Chloro-4-(1-(3,5,5,8,8-pentamethyl-5,6,7,8-tetrahydronaphtha-
len-2-yl)carbonyl)benzoic acid (13): Compound 13 was synthe-
sized following the method of Boehm and co-workers.[11] To
a 100 mL round-bottom flask charged with 49 (0.353 g, 0.88 mmol)
and MeOH (4 mL) was added a 5m aq KOH (0.4 mL, 2.0 mmol). A
reflux condenser was fitted to the round-bottom flask and the re-
action solution was held at reflux and monitored by TLC. After 1 h
at reflux, the reaction solution was cooled to RT and quenched
with 20% HCl (20 mL). The precipitate was filtered and washed
with water to give crude 13 (0.335 g, 98%). Crude 13 was purified
by column chromatography (25 mL SiO2, hexanes/EtOAc 9:1) to
give 13 (0.13 g, 40%) as a white crystalline solid, mp: 174–1758C:
1H NMR (400 MHz, CDCl3): d=8.07 (d, J=8.0, 1H), 7.92 (d, J=1.6,
1H), 7.74 (dd, J=8.0, 1.6, 1H), 7.27 (s, 1H), 7.23 (s, 1H), 2.37 (s,
3H), 1.70 (s, 4H), 1.32 (s, 6H), 1.22 ppm (s, 6H); 13C NMR
(100.6 MHz, CDCl3): d=196.0, 169.9, 149.0, 142.6, 142.1, 134.9,
134.7, 133.7, 132.7, 132.1, 131.6, 129.7, 128.7, 127.9, 34.8, 34.7, 34.4,
33.9, 31.6, 31.5, 20.1 ppm; IR (neat): n˜ =2955, 2926, 1704, 1667,
1543, 1458 cmÀ1; LC–APCI-MS: m/z [M+ +H] calcd for C23H26O3Cl:
385.1571, found: 385.1564; Anal. calcd for C23H25O3Cl: C 71.77; H
6.55; Cl 9.21, found: C 71.45; H 6.30; Cl 9.2.
1
49 (2.22 g, 88%) as a white, crystalline solid, mp: 97–988C: H NMR
(400 MHz, CDCl3): d=7.89 (d, J=8.0, 1H), 7.88 (d, J=1.6, 1H), 7.70
(dd, J=8.0, 1.6, 1H), 7.25 (s, 1H), 7.21 (s, 1H), 3.96 (s, 3H), 2.35 (s,
3H), 1.69 (s, 4H), 1.31 (s, 6H), 1.20 ppm (s, 6H); 13C NMR
(100.6 MHz, CDCl3): d=196.0, 165.7, 148.8, 142.0, 141.8, 134.8,
133.9, 133.7, 133.3, 132.3, 131.1, 129.6, 128.6, 127.8, 52.7, 34.8, 34.7,
34.3, 33.8, 31.6, 31.5, 20.0 ppm; IR (neat): n˜ =2961, 2864, 1738,
1665, 1547, 1484 cmÀ1; GC–MS: m/z [M+] calcd for C24H27O3Cl:
398.1649, found: 398.1657.
Methyl 2-chloro-4-(1-(1,2,3,4-tetrahydro-1,1,4,4,6-pentamethyl-
naphthalen-7-yl)vinyl)benzoate (53): Compound 53 was synthe-
sized according to the method of Boehm and co-workers.[11] To
a 20-dram vial containing 49 (0.830 g, 2.08 mmol) and dry THF
(3 mL) at RT with a Teflon magnetic stir-bar was slowly added a tri-
phenylphosphonium methylide solution prepared as follows: to
a 100 mL round-bottom flask equipped with a Teflon magnetic stir-
bar and containing dry THF (2.0 mL) was added iPr2NH (0.66 mL,
4.67 mmol) and a 2.5m solution of n-butyl lithium in hexanes
(1.7 mL, 4.25 mmol), and the solution was stirred for 30 min at RT
at which point, methyl triphenylphosphonium bromide (1.13 g,
3.19 mmol) was added and the solution was stirred an additional
20 min to provide a homogeneous dark yellow ylide solution. The
reaction was monitored by TLC, and when the reaction was
judged to be complete, the reaction solution was poured into
water (50 mL) and the aqueous solution was extracted with EtOAc
(2ꢁ50 mL). The combined organic extracts were washed with
water and brine, dried over Na2SO4, and concentrated in vacuo to
give crude 53 which was purified by column chromatography
(25 mL SiO2, hexanes/EtOAc 97.5:2.5) to give 53 (0.283 g, 34%) as
Benzyl-3-bromo-4-formylbenzoate (30): Compound 30 was syn-
thesized according to the methods of Kishida and co-workers.[32] To
a 500 mL round-bottom flask charged with 3-chloro-4-methylben-
zoic acid (22) (8.17 g, 38.0 mmol) was added NBS (16.10 g,
90.45 mmol), benzoyl peroxide (0.45 g, 1.8 mmol), and CCl4
(74 mL). The reaction solution was heated at reflux under magnetic
stirring for 36 h, cooled to RT, and solids were filtered and washed
with CCl4 (~20 mL). The filtrate solvent was removed in vacuo and
the crude 4-(dibromomethyl)-3-bromobenzoic acid (24) was dried
on high vacuum and used without further purification. To
a 500 mL round-bottom flask charged with crude 24 (14.16 g,
38.0 mmol) was added EtOH (96 mL), and a solution of AgNO3
(13.28 g, 78.18 mmol) in warm water (18 mL) was added dropwise
while the reaction solution was stirred in an oil bath preheated to
50–558C. Upon addition of the AgNO3 solution, a green precipitate
formed. After stirring at 508C for 45 min, the reaction solution was
cooled to RT and filtered to remove the green precipitate. The fil-
trate solvent was concentrated in vacuo, extracted with EtOAc, and
the combined organic extracts were washed with water and brine,
dried over Na2SO4 and removed in vacuo to give crude 3-bromo-4-
formylbenzoic acid (26) (8.7 g, 100%) that was used without fur-
ther purification. To a 500 mL round-bottom flask charged with 26
(8.7 g, 38.0 mmol) was added dry dimethylformamide (74 mL) and
a 60 wt% suspension of NaH in mineral oil (1.86 g, 46.5 mmol) in
small aliquots over 20 min. The reaction solution was stirred an ad-
ditional 20 min, and benzyl bromide (5.60 mL, 46.8 mmol) was
added to the red heterogeneous solution. After stirring 5 h, the re-
action solution had become homogeneous, and it was poured into
1n HCl (200 mL), extracted with EtOAc (2ꢁ100 mL), and the com-
bined organic extracts were washed with saturated NaHCO3
(75 mL) and brine, dried over Na2SO4, and removed in vacuo to
give crude 30. Crude 30 was purified by column chromatography
(150 mL SiO2, hexanes/EtOAc 4:1) to give 30 (12.1 g, 99%) as a col-
1
a yellow oil: H NMR (400 MHz, CDCl3): d=7.78 (d, J=8.0, 1H), 7.39
(d, J=1.6, 1H), 7.18 (dd, J=8.0, 1.6, 1H), 7.10 (s, 1H), 7.09 (s, 1H),
5.80 (d, J=1.2, 1H), 5.35 (d, J=1.2, 1H), 3.92 (s, 3H), 1.95 (s, 3H),
1.70 (s, 4H), 1.31 (s, 6H), 1.27 ppm (s, 6H); 13C NMR (100.6 MHz,
CDCl3): d=165.9, 147.9, 145.7, 144.6, 142.4, 137.2, 133.9, 132.6,
131.5, 128.9, 128.2, 128.1, 128.0, 124.8, 117.7, 52.3, 35.1, 35.0, 33.9,
33.8, 31.9, 31.8, 19.9 ppm; IR (neat): n˜ =2955, 2924, 2860, 1734,
1714, 1598, 1542, 1497, 1456 cmÀ1; GC–MS: m/z [M+] calcd for
C25H29O2Cl: 396.1856, found: 396.1850.
2-Chloro-4-(1-(1,2,3,4-tetrahydro-1,1,4,4,6-pentamethylnaphtha-
len-7-yl)vinyl)benzoic acid (12): Compound 12 was synthesized
following the methods of Boehm and co-workers.[11] To a 100 mL
round-bottom flask charged with 53 (0.353 g, 0.89 mmol) and
MeOH (5 mL) was added a 5m aq KOH (0.4 mL, 2.0 mmol). A reflux
condenser was fitted to the round-bottom flask and the reaction
solution was held at reflux and monitored by TLC. After 1 h at
reflux, the reaction solution was cooled to RT and quenched with
20% HCl (42 mL). The aqueous solution was extracted with EtOAc
(2ꢁ50 mL) and the organic extracts were combined, washed with
water and brine, dried over Na2SO4, and concentrated in vacuo to
give crude 12. Crude 12 was purified by column chromatography
(25 mL SiO2, hexanes/EtOAc 9:1) to give 12 (0.31 g, 91%) as
1
a white crystalline solid, mp: 200–2018C: H NMR (400 MHz, CDCl3):
d=7.98 (d, J=8.0, 1H), 7.43 (d, J=1.6, 1H), 7.21 (dd, J=8.0, 1.6,
1H), 7.11 (s, 1H), 7.09 (s, 1H), 5.83 (d, J=0.8, 1H), 5.38 (d, J=0.8,
1H), 1.96 (s, 3H), 1.71 (s, 4H), 1.31 (s, 6H), 1.28 ppm (s, 6H);
1
orless oil: H NMR (400 MHz, CDCl3): d=10.40 (d, J=0.8, 1H), 8.33
(d, J=1.6, 1H), 8.10–8.08 (ddd, J=0.8, 1.6, 8.0, 1H), 7.95 (d, J=8.0
&10
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RXR-Selective Agonists
MED
5H), 7.37–7.47 (m, 5H), 5.39 ppm (s, 2H); IR (neat): n˜ =2962, 1723,
Methyl 2-bromo-4-(1-(3,5,5,8,8-pentamethyl-5,6,7,8-tetrahydro-
naphthalen-2-yl)carbonyl)benzoate (50): Compound 50 was syn-
thesized according to the method of Boehm and co-workers.[11]
Methyl 4-(chlorocarbonyl)-2-bromobenzoate (42) was synthesized
by refluxing 4-(methoxycarbonyl)-3-bromobenzoic acid (39) (1.64 g,
6.31 mmol) in SOCl2 (12.0 mL, 165 mmol) in a 100 mL one-neck
round-bottom flask fitted with a water-cooled reflux condenser.
Excess SOCl2 was removed in vacuo to give crude 42 as an off-
white solid, and this solid was dissolved in dry benzene (~20 mL)
and evaporated to dryness three times to remove residual SOCl2.
The acid chloride 42 was dried on high vacuum to remove residual
benzene. To a 2-neck, 50 mL round-bottom flask equipped with
a reflux condenser and magnetic stir-bar was added 48 (1.38 g,
6.82 mmol) followed by a solution of crude acid chloride 42
(6.31 mmol) in CH2Cl2 (15 mL). AlCl3 (2.20 g, 16.5 mmol) was added
to the reaction solution at RT slowly, with stirring, and the reaction
solution turned from colorless to red accompanied by the evolu-
tion of gas and heat. The reaction was stirred for 5 min then
heated at reflux for 15 min. The reaction was judged to be com-
plete by TLC, and the solution was poured into an ice solution
(25 mL) acidified with a 20% HCl solution (8 mL) and EtOAc was
added (13 mL). The aqueous and organic layers were separated,
and the aqueous layer was extracted with EtOAc (2ꢁ15 mL). The
combined organics were washed with water and brine, dried over
Na2SO4, filtered and concentrated to give crude 50. Crude 50 was
purified by column chromatography (250 mL SiO2, hexanes/EtOAc
95:5 to 92.5:7.5) to give 50 (2.37 g, 84%) as a white, crystalline
1683, 1601, 1556, 1479 cmÀ1
;
GC–MS: m/z [M+] calcd for
C15H11O3Br: 317.9892, found: 317.9887.
4-((Benzyloxy)carbonyl)-2-bromobenzoic acid (33): Compound 33
was prepared according to the method of Kishida and co-work-
ers.[32] To a 100 mL round-bottom flask charged with 30 (12.1 g,
37.9 mmol), sulfamic acid (4.06 g, 41.8 mmol), water (45 mL), and
ACN (32 mL) was added a solution of 80% NaClO2 (3.84 g,
42.5 mmol) in water (20 mL). After stirring for 1 h, the reaction so-
lution was poured into saturated Na2SO3 (50 mL) and 1n HCl
(100 mL), and the resulting solution was extracted with EtOAc
(100 mL, thrice). The combined organic extracts were washed with
brine, dried over Na2SO4, and removed in vacuo to give crude 33
(10.5 g, 82%) that was used without further purification. A small
sample was purified by column chromatography (25 mL SiO2, hex-
anes/EtOAc 1:1) to give pure 33 as a white powder: 1H NMR
(400 MHz, CDCl3): d=8.37 (d, J=1.6, 1H), 8.08 (dd, J=8.0, 1.6, 1H),
8.01 (d, J=8.0, 1H), 7.34–7.47 (m, 5H), 5.39 ppm (s, 2H); 13C NMR
(100.6 MHz, CDCl3): d=170.3, 164.2, 135.6, 135.2, 134.4, 134.2,
132.1, 128.7, 128.6, 128.4, 128.2, 122.3, 67.6 ppm; IR (neat): n˜ =
2963, 2538, 1681, 1602, 1551, 1481 cmÀ1; LC–APCI-MS: m/z [M+
+
H] calcd for C15H12O4Br: 334.9919, found: 334.9934.
4-Benzyl 1-methyl 2-bromobenzene-1,4-dioate (36): Compound
36 was synthesized according to the method of Kishida and co-
workers.[32] To a 100 mL round-bottom flask charged with com-
pound 33 (10.5 g, 31.3 mmol) was added SOCl2 (24.0 mL,
330 mmol) and the reaction solution was held at reflux for 1 h in
an oil bath at 848C. The reaction solution was cooled to RT and
the excess SOCl2 was removed in vacuo to give crude 4-chlorocar-
bonyl-2-bromobenzoic acid benzyl ester. The crude 4-chlorocar-
bonyl-2-bromobenzoic acid in dry toluene (16 mL) was added
dropwise to a solution of Et3N (10.4 mL, 74 mmol) in MeOH
(106 mL, 2.6 mol) over 10 min with vigorous stirring. The reaction
solution was stirred 1 h and poured into 1n HCl (300 mL) and ex-
tracted with EtOAc (80 mL, thrice). The combined organic extracts
were washed with brine, dried over Na2SO4, and removed in vacuo
to give crude 36. Crude 36 was purified by column chromatogra-
phy (150 mL SiO2, hexanes/EtOAc 95:5) to give pure 36 as an oil
(8.55 g, 78%): 1H NMR (400 MHz, CDCl3): d=8.32 (d, J=1.6, 1H),
8.03 (dd, J=8.0, 1.6, 1H), 7.80 (d, J=8.0, 1H), 7.36–7.46 (m, 5H),
5.38 (s, 2H), 3.95 ppm (s, 3H); 13C NMR (100.6 MHz, CDCl3): d=
166.1, 164.3, 136.2, 135.3, 135.2, 133.7, 130.9, 128.7, 128.5, 128.4,
128.2, 121.4, 67.4, 52.7 ppm; IR (neat): n˜ =2964, 2558, 1723, 1688,
1603, 1557, 1484 cmÀ1; GC–MS: m/z [M+] calcd for C16H13O4Br:
347.9997, found: 348.0013.
1
solid, mp: 109–1118C: H NMR (400 MHz, CDCl3): d=8.08 (d, J=1.6,
1H), 7.83 (d, J=8.0, 1H), 7.75 (dd, J=8.0, 1.6, 1H), 7.25 (s, 1H),
7.22 (s, 1H), 3.97 (s, 3H), 2.35 (s, 3H), 1.69 (s, 4H), 1.31 (s, 6H),
1.20 ppm (s, 6H); 13C NMR (100.6 MHz, CDCl3): d=195.8, 166.2,
148.8, 142.0, 141.6, 135.6, 135.4, 134.8, 133.8, 130.9, 129.6, 128.7,
128.5, 121.5, 52.7, 34.8, 34.7, 34.3, 33.8, 31.6, 31.5, 20.0 ppm; IR
(neat): n˜ =3015, 2953, 2931, 2863, 1736, 1666, 1605, 1544, 1496,
1459 cmÀ1; GC–MS: m/z [M+] calcd for C24H27O3Br: 442.1144, found:
442.1135.
Methyl 2-bromo-4-(1-(1,2,3,4-tetrahydro-1,1,4,4,6-pentamethyl-
naphthalen-7-yl)vinyl)benzoate (54): Compound 54 was synthe-
sized according to the method of Boehm and co-workers.[11] To
a 20-dram vial containing 50 (0.923 g, 2.08 mmol) and dry THF
(3 mL) at RT with a Teflon magnetic stir-bar was slowly added a tri-
phenylphosphonium methylide solution prepared as follows: to
a 100 mL round-bottom flask equipped with a Teflon magnetic stir-
bar and containing dry THF (2.0 mL) was added iPr2NH (0.66 mL,
4.67 mmol) and a 2.5m solution of n-butyl lithium in hexanes
(1.7 mL, 4.25 mmol), and the solution was stirred for 30 min at RT
at which point, methyl triphenylphosphonium bromide (1.13 g,
3.19 mmol) was added and the solution was stirred an additional
20 min to provide a homogeneous dark yellow ylide solution. The
reaction was monitored by TLC, and when the reaction was
judged to be complete, the reaction solution was poured into
water (50 mL) and the aqueous solution was extracted with EtOAc
(2ꢁ50 mL). The combined organic extracts were washed with
water and brine, dried over Na2SO4, and concentrated in vacuo to
give crude 54 which was purified by column chromatography
(25 mL SiO2, hexanes/EtOAc 97.5:2.5) to give 54 (0.712 g, 77%) as
4-(Methoxycarbonyl)-3-bromobenzoic acid (39): Compound 39
was synthesized according to the methods of Kishida and co-work-
ers.[32] A 3-neck 250 mL round-bottom flask charged with 36
(8.55 g, 24.4 mmol), 10% Pd/C (1.8 g), EtOH (50.0 mL), and EtOAc
(50.0 mL) was evacuated and back-filled with hydrogen gas from
a balloon three times, and the reaction solution was allowed to stir
under hydrogen at RT for 48 h. The reaction solution was filtered
through Celite, and the solvents were removed in vacuo to give
crude 39 (6.15 g, 96%) as a white crystalline solid that was used
without further purification. A small sample of crude 39 was puri-
fied by recrystallization from hot EtOAc to give pure 39, mp: 138–
1
a yellow oil: H NMR (400 MHz, CDCl3): d=7.73 (d, J=8.0, 1H), 7.62
1
(d, J=1.6, 1H), 7.20 (dd, J=8.0, 1.6, 1H), 7.10 (s, 1H), 7.08 (s, 1H),
5.80 (d, J=1.2, 1H), 5.34 (d, J=0.8, 1H), 3.92 (s, 3H), 1.95 (s, 3H),
1.70 (s, 4H), 1.31 (s, 6H), 1.27 ppm (s, 6H); 13C NMR (100.6 MHz,
CDCl3): d=166.3, 147.8, 145.7, 144.6, 142.4, 137.1, 132.6, 132.1,
131.3, 130.2, 128.1, 128.0, 125.4, 121.9, 117.8, 52.4, 35.1, 35.0, 33.9,
33.8, 31.9, 31.8, 20.0 ppm; IR (neat): n˜ =2956, 2921, 1731, 1596,
1408C: H NMR (400 MHz, [D6]DMSO): d=13.59 (brs, 1H), 8.15 (d,
J=1.6, 1H), 8.00 (dd, J=8.0, 1.6, 1H), 7.85 (d, J=8.0, 1H),
3.89 ppm (s, 3H); 13C NMR (100.6 MHz, [D6]DMSO): d=165.8, 165.3,
136.1, 134.7, 134.0, 130.9, 128.4, 119.9, 52.8 ppm; IR (neat): n˜ =
2959, 2844, 2545, 1716, 1686, 1603, 1551, 1485 cmÀ1; LC–GC–MS:
m/z [M+] calcd for C9H7O4Br: 257.9528, found: 257.9502.
ChemMedChem 0000, 00, 1 – 17
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C. E. Wagner et al.
MED
1541, 1497, 1485 cmÀ1; GC–MS: m/z [M+] calcd for C25H29O2Br:
sulting solution was cooled in an ice bath and the precipitate was
440.1351, found: 440.1379.
filtered to give pure 45 (0.318 g, 40%) as a yellow powder, mp:
160–1638C: H NMR (400 MHz, CDCl3): d=11.00 (brs, 1H), 8.68 (d,
1
2-Bromo-4-(1-(1,2,3,4-tetrahydro-1,1,4,4,6-pentamethylnaphtha-
len-7-yl)vinyl)benzoic acid (14): Compound 14 was synthesized
following the methods of Boehm and co-workers.[11] To a 100 mL
round-bottom flask charged with 54 (0.4056 g, 0.9189 mmol) and
MeOH (4 mL) was added a 5m aq KOH (0.4 mL, 2.0 mmol). A reflux
condenser was fitted to the round-bottom flask and the reaction
solution was held at reflux and monitored by TLC. After 1 h at
reflux, the reaction solution was cooled to RT and quenched with
20% HCl (42 mL). The aqueous solution was extracted with EtOAc
(2ꢁ50 mL) and the organic extracts were combined, washed with
water and brine, dried over Na2SO4, and concentrated in vacuo to
give crude 14. Crude 14 was purified by column chromatography
(25 mL SiO2, hexanes/EtOAc 9:1) to give 14 (0.273 g, 70%) as
J=1.6, 1H), 8.11 (dd, J=8.0, 1.6, 1H), 7.83 (d, J=8.0, 1H), 3.97 ppm
(s, 3H); 13C NMR (100.6 MHz, CDCl3): d=169.7, 166.5, 142.6, 140.1,
132.4, 130.5, 129.4, 93.3, 52.8 ppm; IR (neat): n˜ =3289, 2952, 2652,
1736, 1693, 1551, 1480 cmÀ1
.
Methyl
2-iodo-4-(1-(3,5,5,8,8-pentamethyl-5,6,7,8-tetrahydro-
naphthalen-2-yl)carbonyl)benzoate (51): Compound 51 was syn-
thesized according to the method of Boehm and co-workers.[11]
Methyl 4-(chlorocarbonyl)-2-iodobenzoate (46) was synthesized by
refluxing 4-(methoxycarbonyl)-3-iodobenzoic acid (45) (1.93 g,
6.31 mmol) in SOCl2 (10.0 mL, 137 mmol) in a 100 mL one-neck
round-bottom flask fitted with a water-cooled reflux condenser.
Excess SOCl2 was removed in vacuo to give crude 46 as an off-
white solid, and this solid was dissolved in dry benzene (~20 mL)
and evaporated to dryness three times to remove residual SOCl2.
The acid chloride 46 was dried on high vacuum to remove residual
benzene. To a 2-neck, 50 mL round-bottom flask equipped with
a reflux condenser and magnetic stir-bar was added 48 (1.38 g,
6.82 mmol) followed by a solution of crude acid chloride 46
(6.31 mmol) in CH2Cl2 (15 mL). AlCl3 (2.30 g, 17.2 mmol) was added
to the reaction solution at RT slowly, with stirring, and the reaction
solution turned from colorless to dark red accompanied by the
evolution of gas and heat. The reaction was stirred for 5 min then
heated at reflux for 15 min. The reaction was judged to be com-
plete by TLC, and the solution was poured into an ice solution
(25 mL) acidified with a 20% HCl solution (8 mL) and EtOAc was
added (13 mL). The aqueous and organic layers were separated,
and the aqueous layer was extracted with EtOAc (2ꢁ15 mL). The
combined organics were washed with water and brine, dried over
Na2SO4, filtered and concentrated to give crude 51. Attempted pu-
rification of crude 51 by column chromatography (250 mL SiO2,
hexanes/EtOAc 95:5 to 92.5:7.5) gave 51 (2.91 g, 89%) that was
1
a white crystalline solid, mp: 199–2008C: H NMR (400 MHz, CDCl3):
d=7.93 (d, J=8.0, 1H), 7.67 (d, J=1.6, 1H), 7.24 (dd, J=8.0, 1.6,
1H), 7.10 (s, 1H), 7.09 (s, 1H), 5.82 (d, J=0.8, 1H), 5.37 (d, J=0.8,
1H), 1.96 (s, 3H), 1.70 (s, 4H), 1.30 (s, 6H), 1.28 ppm (s, 6H);
13C NMR (100.6 MHz, CDCl3): d=170.4, 147.7, 146.6, 144.7, 142.4,
137.0, 132.6, 132.5, 128.4, 128.2, 128.0, 125.6, 122.8, 118.3, 35.1,
35.0, 34.0, 33.9, 31.9, 31.8, 20.0 ppm; IR (neat): n˜ =2959, 1697,
1594, 1484, 1452 cmÀ1
;
LC–APCI-MS: m/z [M+ +H] calcd for
C24H28O2Br: 427.1273, found: 427.1287; Anal. calcd for C24H27O2Br: C
67.45; H 6.37; Br 18.7, found: C 68.16; H 6.07; Br 18.1.
2-Bromo-4-(1-(3,5,5,8,8-pentamethyl-5,6,7,8-tetrahydronaphtha-
len-2-yl)carbonyl)benzoic acid (15): Compound 15 was synthe-
sized following the method of Boehm and co-workers.[11] To
a 100 mL round-bottom flask charged with 50 (0.395 g, 0.89 mmol)
and MeOH (4 mL) was added a 5m aq KOH (0.4 mL, 2.0 mmol). A
reflux condenser was fitted to the round-bottom flask and the re-
action solution was held at reflux and monitored by TLC. After 1 h
at reflux, the reaction solution was cooled to RT and quenched
with 20% HCl (20 mL). The precipitate was filtered and washed
with water to give crude 15 (0.3722 g, 97%). Crude 15 was purified
by column chromatography (25 mL SiO2, hexanes/EtOAc 9:1) to
give pure 15 (0.25 g, 65%) as a white crystalline solid, mp: 166–
1
~7 mol% 49 as a white, crystalline solid, mp: 115–1168C: H NMR
(400 MHz, CDCl3): d=8.38 (d, J=1.6, 1H), 7.83 (d, J=8.0, 1H), 7.79
(dd, J=8.0, 1.6, 1H), 7.25 (s, 1H), 7.22 (s, 1H), 3.97 (s, 3H), 2.37 (s,
3H), 1.69 (s, 4H), 1.31 (s, 6H), 1.21 ppm (s, 6H); 13C NMR
(100.6 MHz, CDCl3): d=195.7, 166.6, 148.8, 142.5, 141.9, 141.4,
138.5, 135.0, 133.7, 130.4, 129.6, 129.3, 128.8, 93.5, 52.7, 34.8, 34.7,
34.3, 33.8, 31.6, 31.5, 20.1 ppm; IR (neat): n˜ =2953, 1729, 1667,
1540, 1459 cmÀ1; GC–MS: m/z [M+] calcd for C24H27O3I: 490.1005,
found: 490.0995.
1
1678C: H NMR (400 MHz, CDCl3): d=8.13 (d, J=1.6, 1H), 8.05 (d,
J=8.0, 1H), 7.80 (dd, J=8.0, 1.6, 1H), 7.27 (s, 1H), 7.23 (s, 1H), 2.38
(s, 3H), 1.70 (s, 4H), 1.32 (s, 6H), 1.21 ppm (s, 6H); 13C NMR
(100.6 MHz, CDCl3): d=195.7, 170.6, 149.0, 143.1, 142.2, 142.0,
136.4, 135.1, 133.6, 131.6, 129.7, 129.4, 129.0, 94.1, 34.8, 34.7, 34.4,
33.9, 31.6, 31.5, 20.1 ppm; IR (neat): n˜ =2955, 2924, 1703, 1667,
1607, 1542, 1456 cmÀ1
;
LC–APCI-MS: m/z [M+ +H] calcd for
Methyl
2-iodo-4-(1-(1,2,3,4-tetrahydro-1,1,4,4,6-pentamethyl-
C23H26O3Br: 429.1065, found: 429.1074; Anal. calcd for C23H25O3Br: C
64.34; H 5.87; Br 18.61, found: C 65.08; H 5.59; Br 17.1.
naphthalen-7-yl)vinyl)benzoate (55): Compound 55 was synthe-
sized according to the method of Boehm and co-workers.[11] To
a 20-dram vial containing 51 (1.0123 g, 2.06 mmol) and dry THF
(3 mL) at RT with a Teflon magnetic stir-bar was slowly added a tri-
phenylphosphonium methylide solution prepared as follows: to
a 100 mL round-bottom flask equipped with a Teflon magnetic stir-
bar and containing dry THF (2.0 mL) was added iPr2NH (0.66 mL,
4.67 mmol) and a 2.5m solution of n-butyl lithium in hexanes
(1.7 mL, 4.25 mmol), and the solution was stirred for 30 min at RT
at which point, methyl triphenylphosphonium bromide (1.13 g,
3.19 mmol) was added and the solution was stirred an additional
20 min to provide a homogeneous dark yellow ylide solution. The
reaction was monitored by TLC, and when the reaction was
judged to be complete, the reaction solution was poured into
water (50 mL) and the aqueous solution was extracted with EtOAc
(2ꢁ50 mL). The combined organic extracts were washed with
water and brine, dried over Na2SO4, and concentrated in vacuo to
give crude 55. Attempted purification of 55 by column chromatog-
4-(Methoxycarbonyl)-3-iodobenzoic acid (45): The method of Ber-
tozzi and co-workers was followed to synthesize 45.[37] To a 100 mL
round-bottom flask charged with 1-mehtyl-2-aminoterephthalate
(0.503 g, 2.58 mmol) was added concentrated HCl (5 mL) followed
by the dropwise addition of
a solution of NaNO2 (0.185 g,
2.68 mmol) in water (1 mL), during which addition, orange gas
evolved. The reaction was stirred (30 min) at RT, filtered through
glass wool, and then a solution of potassium iodide (4.31 g,
2.6 mmol) in water (7 mL) was added, dropwise. The resulting red
solution was stirred (1 h) and then diluted with CH2Cl2 (100 mL).
The layers were separated, and the aqueous layer was washed
with CH2Cl2 (2ꢁ10 mL), followed by saturated Na2SO3, water, and
then brine. The aqueous layers were then back extracted with
CH2Cl2 (20 mL), and the combined organic layers were dried over
Na2SO4 and concentrated to give crude 45. Crude 45 was dissolved
in hot MeOH (15 mL), and water was added (15 mL), and the re-
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raphy (25 mL SiO2, hexanes/EtOAc 97.5:2.5) gave 55 (0.3502 g,
32%) that possessed ~9 mol% 53 as
thylformamide (12.4 mL, 158 mmol) was added. The reaction was
allowed to stir at À788C for 1 h, and then stirred at 08C for 1 h,
and then allowed to warm to RT and stirred for 16 h. The reaction
was carefully quenched with concentrated HCl (by slow addition)
until pH 1 (~30 mL), and then concentrated in vacuo. The residue
was extracted with CH2Cl2 (2ꢁ100 mL), and the organic layers were
combined and concentrated in vacuo. The residue was diluted
with CH2Cl2 (50 mL) and then washed with saturated NaHCO3 (2ꢁ
75 mL). The aqueous extracts were acidified with concentrated HCl
(18 mL), and the resulting precipitate was filtered and dried to give
a
yellow oil: 1H NMR
(400 MHz, CDCl3): d=7.99 (d, J=1.6, 1H), 7.72 (d, J=8.0, 1H), 7.21
(dd, J=8.0, 1.6, 1H), 7.09 (s, 1H), 7.08 (s, 1H), 5.78 (d, J=1.2, 1H),
5.33 (d, J=0.8, 1H), 3.92 (s, 3H), 1.95 (s, 3H), 1.70 (s, 4H), 1.31 (s,
6H), 1.27 ppm (s, 6H); 13C NMR (100.6 MHz, CDCl3): d=166.6, 147.6,
145.6, 144.5, 142.4, 139.1, 137.2, 133.1, 132.6, 130.8, 128.1, 128.0,
126.3, 117.8, 94.4, 52.4, 35.1, 33.9, 33.8, 31.9, 31.8, 20.0 ppm; IR
(neat): n˜ =2957, 2926, 2862, 1726, 1664, 1590, 1541, 1497,
1456 cmÀ1; GC–MS: m/z [M+] calcd for C25H29O2I: 488.1213, found:
488.1222.
1
pure 27 (4.28 g, 36%) as a white powder, mp: 194–2168C: H NMR
(400 MHz, [D6]DMSO): d=13.98 (brs, 1H), 10.23 (s, 1H), 7.64 ppm
(d, J=9.2, 1H); 13C NMR (100.6 MHz, [D6]DMSO): d=184.9, 184.9,
184.8, 164.6, 164.5, 164.5, 163.3, 163.2, 160.7, 160.6, 138.4, 138.3,
138.2, 116.5, 116.4, 116.3, 113.4, 113.3, 113.2, 113.1 ppm; IR (neat):
n˜ =3078, 2935, 2615, 1717, 1679, 1633, 1573, 1475 cmÀ1; GC–MS:
m/z [M+] calcd for C8H4O3F2: 186.0129, found: 186.0130.
2-Iodo-4-(1-(1,2,3,4-tetrahydro-1,1,4,4,6-pentamethylnaphtha-
len-7-yl)vinyl)benzoic acid (16): Compound 16 was synthesized
following the methods of Boehm and co-workers.[11] To a 100 mL
round-bottom flask charged with 55 (0.3156 g, 0.646 mmol) and
MeOH (4 mL) was added a 5m aq KOH (0.4 mL, 2.0 mmol). A reflux
condenser was fitted to the round-bottom flask and the reaction
solution was held at reflux and monitored by TLC. After 1 h at
reflux, the reaction solution was cooled to RT and quenched with
20% HCl (42 mL). The aqueous solution was extracted with EtOAc
(2ꢁ50 mL) and the organic extracts were combined, washed with
water and brine, dried over Na2SO4, and concentrated in vacuo to
give crude 16. Crude 16 was purified by column chromatography
(25 mL SiO2, hexanes/EtOAc 9:1) to give 16 (0.105 g, 34%), and this
material was crystallized from EtOAc to provide pure 16 (0.063,
Benzyl-3,5-difluoro-4-formylbenzoate (31): Compound 31 was
synthesized according to the methods of Kishida and co-work-
ers.[32] To a 500 mL round-bottom flask charged with 27 (8.8 g,
47.2 mmol) was added dry dimethylformamide (100 mL) and
a 60 wt% suspension of NaH in mineral oil (2.93 g, 73.3 mmol) in
small aliquots over 20 min. The reaction solution was stirred an ad-
ditional 20 min, and benzyl bromide (8.10 mL, 67.7 mmol) was
added to the red heterogeneous solution. After stirring 5 h, the re-
action solution had become homogeneous, and it was poured into
1n HCl (250 mL), extracted with EtOAc (2ꢁ100 mL), and the com-
bined organic extracts were washed with saturated NaHCO3
(75 mL) and brine, dried over Na2SO4, and removed in vacuo to
give crude 31. Crude 31 was purified by column chromatography
(150 mL SiO2, hexanes/EtOAc 4:1) to give 31 (12.1 g, 93%) as a col-
20%) as
a
white crystalline solid, mp: 199–2008C: 1H NMR
(400 MHz, CDCl3): d=8.06 (d, J=2.0, 1H), 7.94 (d, J=8.0, 1H), 7.25
(dd, J=8.0, 2.0, 1H), 7.10 (s, 1H), 7.09 (s, 1H), 5.81 (d, J=0.8, 1H),
5.37 (d, J=1.2, 1H), 1.97 (s, 3H), 1.70 (s, 4H), 1.31 (s, 6H), 1.28 ppm
(s, 6H); 13C NMR (100.6 MHz, CDCl3): d=170.9, 147.5, 146.5, 144.6,
142.4, 139.7, 137.0, 132.5, 132.0, 131.2, 128.2, 128.0, 126.4, 118.2,
95.0, 35.0, 34.0, 33.8, 31.9, 31.8, 20.0 ppm; IR (neat): n˜ =2954, 2909,
1695, 1591, 1539, 1481 cmÀ1; LC–APCI-MS: m/z [M+ +H] calcd for
C24H28O2I: 475.1134, found: 475.1126; Anal. calcd for C24H27O2I: C
60.77; H 5.74; I 26.75, found: C 61.04; H 5.64; I 26.4.
1
orless oil: H NMR (400 MHz, CDCl3): d=10.32 (s, 1H), 7.66 (d, J=
11.2, 1H), 7.36–7.46 (m, 5H), 5.38 ppm (s, 2H); 13C NMR (100.6 MHz,
CDCl3): d=186.2, 186.2, 184.0, 184.0, 183.9, 164.0, 164.0, 163.1,
163.1, 163.1, 161.4, 161.3, 137.4, 137.2, 137.1, 134.8, 134.6, 128.7,
128.7, 128.7, 128.5, 128.4, 116.8, 116.7, 116.6, 113.8, 113.7, 113.7,
113.6, 113.5, 113.5, 113.0, 107.9, 107.6, 68.4, 68.0 ppm; IR (neat): n˜ =
3072, 2668, 2548, 1722, 1697, 1632, 1573, 1484 cmÀ1; GC–MS: m/z
[M+] calcd for C15H10O3F2: 292.0547, found: 292.0548.
2-Iodo-4-(1-(3,5,5,8,8-pentamethyl-5,6,7,8-tetrahydronaphtha-
len-2-yl)carbonyl)benzoic acid (17): Compound 17 was synthe-
sized following the method of Boehm and co-workers.[11] To
a 100 mL round-bottom flask charged with 51 (0.437 g, 0.89 mmol)
and MeOH (4 mL) was added a 5m aq KOH (0.4 mL, 2.0 mmol). A
reflux condenser was fitted to the round-bottom flask and the re-
action solution was held at reflux and monitored by TLC. After 1 h
at reflux, the reaction solution was cooled to RT and quenched
with 20% HCl (20 mL). The precipitate was filtered and washed
with water to give crude 17 (0.4043 g, 95%). Attempted purifica-
tion of crude 17 by column chromatography (25 mL SiO2, hexanes/
EtOAc 9:1) gave 17 (0.34 g, 74%) that contained ~9 mol% 13 as
4-((Benzyloxy)carbonyl)-2,6-difluorobenzoic acid (34): Compound
34 was prepared according to the method of Kishida and co-work-
ers.[32] To a 100 mL round-bottom flask charged with 31 (12.1 g,
43.8 mmol), sulfamic acid (4.60 g, 47.4 mmol), water (75 mL), and
ACN (38 mL) was added a solution of 80% NaClO2 (5.43 g,
60.0 mmol) in water (25 mL). After stirring for 1 h, the reaction so-
lution was poured into saturated Na2SO3 (80 mL) and 1n HCl
(150 mL), and the resulting solution was extracted with EtOAc
(100 mL, thrice). The combined organic extracts were washed with
brine, dried over Na2SO4, and removed in vacuo to give crude 34
(11.4 g, 89%) that was used without further purification. A small
sample was purified by column chromatography (25 mL SiO2, hex-
anes/EtOAc 1:1) to give pure 34 as a white powder: 1H NMR
(400 MHz, CDCl3): d=9.83 (brs, 1H), 7.67 (d, J=8.0, 1H), 7.36–7.46
(m, 5H), 7.34–7.47 (m, 5H), 5.39 ppm (s, 2H); 13C NMR (100.6 MHz,
CDCl3): d=165.6, 163.4, 163.4, 162.1, 162.0, 159.5, 159.5, 135.6,
135.5, 135.4, 134.8, 128.7, 128.4, 113.6, 113.5, 113.4, 113.3, 113.3,
113.2, 67.9 ppm; IR (neat): n˜ =3071, 2896, 2668, 2548, 1723, 1694,
1
a white crystalline solid: H NMR (400 MHz, CDCl3): d=8.44 (d, J=
1.6, 1H), 8.05 (d, J=8.0, 1H), 7.84 (dd, J=8.0, 1.6, 1H), 7.27 (s, 1H),
7.23 (s, 1H), 2.38 (s, 3H), 1.70 (s, 4H), 1.32 (s, 6H), 1.22 ppm (s, 6H);
13C NMR (100.6 MHz, CDCl3): d=195.7, 170.6, 149.0, 143.1, 142.2,
142.0, 136.4, 135.1, 133.6, 131.6, 129.7, 129.4, 129.0, 94.1, 34.8, 34.7,
34.4, 33.9, 31.6, 31.5, 20.1 ppm; IR (neat): n˜ =2958, 1703, 1661,
1542, 1458 cmÀ1; LC–APCI-MS: m/z [M+ +H] calcd for C23H26O3I:
477.0927, found: 477.0922; Anal. calcd for C23H25O3I: C 57.99; H
5.29; I 26.64, found: C 59.15; H 5.14; I 24.5.
3,5-Difluoro-4-formylbenzoic acid (27): The method of Anderson
and co-workers was followed to synthesize 27.[33] To a 1 L round-
bottom flask charged with 3,5-difluorobenzoic acid (10.00 g,
63.3 mmol) and THF (290 mL) cooled to À788C was added a 1.7m
solution of tert-butyl lithium in pentane (93.0 mL, 158 mmol), drop-
wise. The reaction was stirred at À788C for 30 min, and then dime-
1632, 1572, 1484 cmÀ1
;
LC–APCI-MS: m/z [M+ +H] calcd for
C15H10O3F2: 276.0598, found: 276.0604.
4-Benzyl 1-methyl-2,6-difluorobenzene-1,4-dioate (37): Com-
pound 37 was synthesized according to the method of Kishida and
co-workers.[32] To a 100 mL round-bottom flask charged with com-
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pound 33 (11.4 g, 39.0 mmol) was added SOCl2 (25.0 mL,
340 mmol) and the reaction solution was held at reflux for 1 h in
an oil bath at 848C. The reaction solution was cooled to RT and
the excess SOCl2 was removed in vacuo to give crude 4-chlorocar-
bonyl-2,6-difluorobenzoic acid benzyl ester. The crude 4-chlorocar-
bonyl-2,6-difluorobenzoic acid in dry toluene (25 mL) was added
dropwise to a solution of Et3N (13.2 mL, 95 mmol) in MeOH (70 mL,
1.7 mol) over 10 min with vigorous stirring. The reaction solution
was stirred 1 h and poured into 1n HCl (300 mL) and extracted
with EtOAc (80 mL, thrice). The combined organic extracts were
washed with brine, dried over Na2SO4, and removed in vacuo to
give crude 37. Crude 37 was purified by column chromatography
(150 mL SiO2, hexanes/EtOAc 95:5) to give pure 37 as an oil
(9.67 g, 81%): 1H NMR (400 MHz, CDCl3): d=7.63 (d, J=7.6, 2H),
7.36–7.48 (m, 5H), 5.38 (s, 2H), 3.97 ppm (s, 3H); 13C NMR
(100.6 MHz, CDCl3): d=163.5, 163.4, 163.4, 161.5, 161.4, 161.2,
158.9, 158.9, 134.9, 134.6, 134.5,134.4, 128.7, 128.6, 128.4,
115.0,114.8, 114.6, 113.3, 113.3, 113.3, 113.1, 113.1, 113.0, 67.7,
53.1 ppm; IR (neat): n˜ =2956, 1728, 1634, 1574, 1488 cmÀ1; LC–MS:
m/z [M+ +H] calcd for C16H13O4F2: 307.0782, found: 307.0784.
2H), 7.23 (s, 1H), 7.21 (s, 1H), 3.98 (s, 3H), 2.34 (s, 3H), 1.69 (s, 4H),
1.31 (s, 6H), 1.21 ppm (s, 6H); 13C NMR (100.6 MHz, CDCl3): d=
194.7, 161.5, 161.4, 158.9, 158.9, 149.0, 142.5, 142.5, 142.1, 136.1,
134.7, 133.3, 133.1, 129.9, 129.7, 128.3, 114.1, 113.5, 113.2, 53.1,
52.6, 34.7, 34.7, 34.4, 33.9, 33.8, 31.6, 31.5, 20.6, 20.0 ppm; IR (neat):
n˜ =3072, 2957, 2922, 2858, 1747, 1670, 1630, 1567, 1455 cmÀ1; LC–
MS: m/z [M+ +H] calcd for C24H27O3F2: 401.1928, found: 401.1937.
Methyl 2,6-difluoro-4-(1-(1,2,3,4-tetrahydro-1,1,4,4,6-pentame-
thylnaphthalen-7-yl)vinyl)benzoate (56): Compound 56 was syn-
thesized according to the method of Boehm and co-workers.[11] To
a 20-dram vial containing 52 (0.814 g, 2.03 mmol) and dry THF
(3 mL) at RT with a Teflon magnetic stir-bar was slowly added a tri-
phenylphosphonium methylide solution prepared as follows: to
a 100 mL round-bottom flask equipped with a Teflon magnetic stir-
bar and containing dry THF (2.0 mL) was added iPr2NH (0.66 mL,
4.67 mmol) and a 2.5m solution of n-butyl lithium in hexanes
(1.7 mL, 4.25 mmol), and the solution was stirred for 30 min at RT
at which point, methyl triphenylphosphonium bromide (1.13 g,
3.19 mmol) was added and the solution was stirred an additional
20 min to provide a homogeneous dark yellow ylide solution. The
reaction was monitored by TLC, and when the reaction was
judged to be complete, the reaction solution was poured into
water (50 mL) and the aqueous solution was extracted with EtOAc
(2ꢁ50 mL). The combined organic extracts were washed with
water and brine, dried over Na2SO4, and concentrated in vacuo to
give crude 56 which was purified by column chromatography
(25 mL SiO2, hexanes/EtOAc 97.5:2.5) to give 56 (0.36 g, 44%) as
4-(Methoxycarbonyl)-3,5-difluorobenzoic acid (40): Compound
40 was synthesized as follows. A 0.05m solution of 37 (9.67 g,
31.6 mmol) in EtOH (630 mL) was passed through a 10% Pd/C car-
tridge in the ThalesNano H-cube at 708C and 14 bar. The resulting
solution was concentrated in vacuo to give crude 40 (6.54 g, 96%)
as a white crystalline solid that was used without further purifica-
tion. A small sample of crude 40 was purified by recrystallization
from hot EtOAc to give pure 40, mp: 148–1508C: 1H NMR
(400 MHz, CDCl3): d=11.65 (brs, 1H), 7.67 (d, J=7.6, 2H), 3.99 ppm
(s, 3H); 13C NMR (100.6 MHz, CDCl3): d=169.2, 161.5, 161.4, 161.1,
158.9, 158.9, 133.5, 133.4, 133.3, 115.9, 115.7, 115.5, 113.9, 113.8,
113.6, 113.6, 53.2 ppm; IR (neat): n˜ =3080, 2840, 2653, 2577, 1739,
1697, 1632, 1575, 1489 cmÀ1; LC–MS: m/z [M+ +H] calcd for
C9H7O4F2: 217.0312, found: 217.0300.
1
a yellow oil: H NMR (400 MHz, CDCl3): d=7.09 (s, 1H), 7.08 (s, 1H),
6.86 (dd, J=9.2, 4, 2H), 5.80 (d, J=3.2, 1H), 5.36 (d, J=3.2, 1H),
3.94 (s, 3H), 1.95 (s, 3H), 1.70 (s, 4H), 1.31 (s, 6H), 1.27 ppm (s, 6H);
13C NMR (100.6 MHz, CDCl3): d=162.0, 159.5, 159.4, 147.3, 146.6,
146.4, 144.8, 144.8, 142.5, 136.6, 136.6, 132.5, 132.1, 132.0, 131.9,
128.5, 128.4, 128.2, 127.9, 118.2, 110.1, 109.8, 109.0, 61.8, 60.3,
52.69, 35.0, 35.0, 34.0, 33.8, 31.8, 31.8, 21.0, 19.8, 14.1, 14.1 ppm; IR
(neat): n˜ =2958, 2924, 2862, 1728, 1629, 1557, 1497, 1456 cmÀ1
;
Methyl 2,6-difluoro-4-(1-(3,5,5,8,8-pentamethyl-5,6,7,8-tetrahy-
dronaphthalen-2-yl)carbonyl)benzoate (52): Compound 52 was
synthesized according to the method of Boehm and co-workers.[11]
Methyl 4-(chlorocarbonyl)-3,5-difluorobenzoate (43) was synthe-
sized by refluxing 4-(methoxycarbonyl)-3,5-difluorobenzoic acid
(40) (1.47 g, 6.80 mmol) in SOCl2 (12.0 mL, 165 mmol) in a 100 mL
one-neck round-bottom flask fitted with a water-cooled reflux con-
denser. Excess SOCl2 was removed in vacuo to give crude 43 as an
off-white solid, and this solid was dissolved in dry benzene (~
20 mL) and evaporated to dryness three times to remove residual
SOCl2. The acid chloride 43 was dried on high vacuum to remove
residual benzene. To a 2-neck, 50 mL round-bottom flask equipped
with a reflux condenser and magnetic stir-bar was added 48
(1.47 g, 7.26 mmol) followed by a solution of crude acid chloride
43 (6.80 mmol) in CH2Cl2 (15 mL). AlCl3 (2.20 g, 16.5 mmol) was
added to the reaction solution at RT slowly, with stirring, and the
reaction solution turned from colorless to red accompanied by the
evolution of gas and heat. The reaction was stirred for 5 min then
heated at reflux for 15 min. The reaction was judged to be com-
plete by TLC, and the solution was poured into an ice solution
(25 mL) acidified with a 20% HCl solution (8 mL) and EtOAc was
added (13 mL). The aqueous and organic layers were separated,
and the aqueous layer was extracted with EtOAc (2ꢁ15 mL). The
combined organics were washed with water and brine, dried over
Na2SO4, filtered and concentrated to give crude 52. Crude 52 was
purified by column chromatography (250 mL SiO2, hexanes/EtOAc
95:5 to 92.5:7.5) to give 52 (3.19 g, 58%) as a white, crystalline
LC–MS: m/z [M+ +H] calcd for C25H29O2F2: 399.2136, found:
399.2138.
2,6-Difluoro-4-(1-(1,2,3,4-tetrahydro-1,1,4,4,6-pentamethylnaph-
thalen-7-yl)vinyl)benzoic acid (18): Compound 18 was synthe-
sized following the method of Boehm and co-workers.[11] To
a
100 mL round-bottom flask charged with 56 (0.3586 g,
0.8999 mmol) and MeOH (4 mL) was added a 5m aq KOH (0.4 mL,
2.0 mmol). A reflux condenser was fitted to the round-bottom flask
and the reaction solution was held at reflux and monitored by TLC.
After 1 h at reflux, the reaction solution was cooled to RT and
quenched with 20% HCl (20 mL). The precipitate was filtered and
washed with water to give crude 18 (0.3459 g, 100%). Crude 18
was purified by column chromatography (25 mL SiO2, hexanes/
EtOAc 9:1) to give pure 18 (0.25 g, 72%) as a white crystalline
1
solid, mp: 191–1928C: H NMR (400 MHz, CDCl3): d=9.23 (brs, 1H),
7.10 (s, 1H), 7.08 (s, 1H), 6.89 (d, J=10, 2H), 5.84 (s, 1H), 5.41(s,
1H), 1.97 (s, 3H), 1.70 (s, 4H), 1.31 (s, 6H), 1.28 ppm (s, 6H);
13C NMR (100.6 MHz, CDCl3): d=166.6, 162.8, 162.8, 160.2, 160.2,
147.9, 147.8, 147.7, 147.2, 144.9, 142.6, 136.5, 132.5, 128.2, 128.0,
118.7, 110.4, 110.3, 110.1, 107.8, 107.6, 107.5, 35.0, 35.0, 34.0, 33.8,
31.9, 31.8, 19.8 ppm; IR (neat): n˜ =3748, 2956, 2349, 1695, 1625,
1556, 1487 cmÀ1; LC–APCI-MS: m/z [M+ +H] calcd for C24H27O2F2:
385.1979, found: 385.1975; Anal. calcd for C24H26O2F2: C, 74.98; H,
6.82; F, 9.88, found: C, 74.74; H, 6.84; F, 9.10.
2,6-Difluoro-4-(1-(3,5,5,8,8-pentamethyl-5,6,7,8-tetrahydronaph-
thalen-2-yl)carbonyl)benzoic acid (19): Compound 19 was synthe-
sized following the method of Boehm and co-workers.[11] To
1
solid, mp: 107–1118C: H NMR (400 MHz, CDCl3): d=7.37 (d, J=8.0,
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RXR-Selective Agonists
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Goodman), Academic Press, Orlando, 1994, pp. 319–349; b) M. Leid, P.
Kastner, P. Chambon, Trends Biochem. Sci. 1992, 17, 427–433.
[2] J. M. Olefsky, J. Biol. Chem. 2001, 276, 36863–36864.
[3] B. M. Forman, C.-R. Yang, M. Au, J. Casanova, J. Ghysdael, H. H. Samuels,
Mol. Endocrinol. 1989, 3, 1610–1626.
[4] D. J. Mangelsdorf, R. M. Evans, Cell 1995, 83, 841–850.
[5] P. D. Thompson, L. S. Remus, J.-C. Hsieh, P. W. Jurutka, G. K. Whitfield,
M. A. Galligan, C. Encinas Dominguez, C. A. Haussler, M. R. Haussler, J.
Mol. Endocrinol. 2001, 27, 211–227.
[6] S. Svensson, T. Ostberg, M. Jacobsson, C. Norstrom, K. Stefansson, D.
Hallen, I. C. Johansson, K. Zachrisson, D. Ogg, L. Jendeberg, EMBO J.
2003, 22, 4625–4633.
[7] V. Nahoum, E. Perez, P. Germain, F. Rodriquez-Barrios, F. Manzo, S. Kam-
merer, G. Lemaire, O. Hirsch, C. A. Royer, H. Gronemeyer, A. R. de Lera,
W. Bourguet, Proc. Natl. Acad. Sci. USA 2007, 104, 17323–17328.
[8] L. Altucci, M. D. Leibowitz, K. M. Ogilvie, A. R. de Lera, H. Gronemeyer,
Nat. Rev. Drug Discovery 2007, 6, 793–810.
a 100 mL round-bottom flask charged with 52 (0.692 g, 1.73 mmol)
and MeOH (9 mL) was added a 5m aq KOH (0.8 mL, 4.0 mmol). A
reflux condenser was fitted to the round-bottom flask and the re-
action solution was held at reflux and monitored by TLC. After 1 h
at reflux, the reaction solution was cooled to RT and quenched
with 20% HCl (42 mL). The precipitate was filtered and washed
with water to give crude 19 (0.634 g, 95%). Crude 19 was purified
by column chromatography (25 mL SiO2, hexanes/EtOAc 9:1) to
give 19 (0.54 g, 81%) as
a
white crystalline solid: 1H NMR
(400 MHz, CDCl3): d=8.54 (brs, 1H), 7.39 (d, J=8.4, 1H), 7.25 (s,
1H), 7.22 (s, 1H), 2.34 (s, 3H), 1.69 (s, 4H), 1.31 (s, 6H), 1.22 ppm (s,
6H); 13C NMR (100.6 MHz, CDCl3): d=194.7, 165.6, 162.0, 162.0,
159.4, 159.4, 149.2, 143.2, 142.2, 134.8, 133.2, 129.7, 128.3, 113.7,
113.4, 34.7, 34.7, 34.4, 33.9, 31.6, 31.5, 20.0 ppm; IR (neat): n˜ =3498,
2956, 2923, 2522, 1674, 1632, 1571, 1487 cmÀ1; LC–APCI-MS: m/z
[M+ +H] calcd for C23H25O3F2: 387.1772, found: 387.1757; Anal.
calcd for C23H24O3F2: C, 71.49; H, 6.26; F, 9.83, found: C, 70.53; H,
6.05; F, 7.90.
[9] J. M. Lehmann, L. Jong, A. Fanjul, J. F. Cameron, X.-P. Lu, P. Haefner, M. I.
Dawson, M. Pfahl, Science 1992, 258, 1944–1946.
[10] a) L. Jong, J. M. Lehmann, P. D. Hobbs, E. Harlev, J. C. Huffman, M. Pfahl,
M. I. Dawson, J. Med. Chem. 1993, 36, 2605–2613; b) M. I. Dawson, L.
Jong, P. D. Hobbs, J. F. Cameron, W.-R. Chao, M. Pfahl, M.-O. Lee, B.
Shroot, M. Pfahl, J. Med. Chem. 1995, 38, 3368–3383.
Abbreviations
[11] M. F. Boehm, L. Zhang, B. A. Badea, S. K. White, D. E. Mais, E. Berger,
C. M. Suto, M. E. Goldman, R. A. Heyman, J. Med. Chem. 1994, 37, 2930–
2941.
[12] J. O. Daiss, C. Burschka, J. S. Mills, J. G. Montana, G. A. Showell, I. Flem-
ing, C. Gaudon, D. Ivanova, H. Gronemeyer, R. Tacke, Organometallics
2005, 24, 3192–3199.
[13] a) W.-C. Yen, M. R. Corpuz, R. Y. Prudente, T. A. Cooke, R. P. Bissonnette,
A. Negro-Vilar, W. W. Lamph, Clin. Cancer Res. 2004, 10, 8656–8664;
b) K. H. Dragnev, W. J. Petty, S. J. Shah, L. D. Lewis, C. C. Black, V. Memoli,
W. C. Nugent, T. Hermann, A. Negro-Vilar, J. R. Rigas, E. Dmitrovsky, Clin.
Cancer Res. 2007, 13, 1794–1800.
(h)RXR, (human) retinoid X receptor; RAR, retinoic acid receptor;
CTCL, cutaneous T-cell lymphoma; RXRE, retinoid X receptor ele-
ment; HRE, hormone response element; LBP, ligand binding
pocket; LXR, liver X receptor; TR, thyroid hormone receptor; VDR,
1,25-dihydroxyvitamin D receptor; SNuRMs, specific nuclear recep-
tor modulators; TLC, thin-layer chromatography; FDA, U.S. Food
and Drug Administration; MEM, minimum essential media; FBS,
fetal bovine serum; BD, binding domain; AD, activation domain;
apoE, apolipoprotein E.
[14] W.-C. Yen, R. Y. Prudente, W. W. Lamph, Breast Cancer Res. Treat. 2004,
88, 141–148.
[15] R. M. Cesario, J. Stone, W.-C. Yen, R. P. Bissonnette, W. W. Lamph, Cancer
Lett. 2006, 240, 225–233.
[16] R. Mukherjee, P. J. A. Davies, D. L. Crombie, E. D. Bischoff, R. M. Cesario,
L. Jow, L. G. Hamanns, M. F. Boehm, C. E. Mondon, A. M. Nadzan, J. R.
Paterniti, R. A. Heyman, Nature 1997, 386, 407–410.
[17] S. I. Sherman, J. Gopal, B. R. Haugen, A. C. Chiu, K. Whaley, P. Nowlakha,
M. Duvic, N. Engl. J. Med. 1999, 340, 1075–1079.
Supporting Information
1H NMR and 13C NMR spectra of all compounds reported in the ex-
perimentals as well as X-ray data for compounds 12, 14, 16, 18
and 52. CCDC 859464, 859465, 859466, 859467, and 859468 con-
tain the supplementary crystallographic data for this paper. These
data can be obtained free of charge from The Cambridge Crystallo-
graphic Data Centre via www.ccdc.cam.ac.uk/data_request/cif.
[18] D. Li, T. Li, F. Wang, H. Tian, H. H. Samuels, Mol. Cell. Biol. 2002, 22,
5782–5792.
[19] a) S. Murthy, E. Born, S. N. Mathur, F. J. Field, J. Lipid Res. 2002, 43,
1054–1064; b) F. J. Field, E. Born, S. N. Mathur, J. Lipid Res. 2004, 45,
905–913.
Acknowledgements
[20] S. M. Thacher, A. M. Standeven, J. Athanikar, S. Kopper, O. Castilleja, M.
Escobar, R. L. Beard, R. A. S. Chandraratna, J. Pharmacol. Exp. Ther. 1997,
282, 528–534.
[21] V. Vuligonda, S. M. Thacher, R. A. S. Chandraratna, J. Med. Chem. 2001,
44, 2298–2303.
[22] L. J. Farmer, K. S. Marron, S. S. Canan Koch, C. K. Hwang, E. A. Kallel, L.
Zhi, A. M. Nadzan, D. W. Robertson, Y. L. Bennani, Bioorg. Med. Chem.
Lett. 2006, 16, 2352–2356.
[23] H. Kagechika, E. Kawachi, Y. Hashimoto, T. Himi, K. Shudo, J. Med. Chem.
1988, 31, 2182–2192.
[24] J.-Y. Winum, S. Baghdiguian, T. Commes, A. Leydet, J.-L. Montero,
Bioorg. Med. Chem. Lett. 2002, 12, 3529–3532.
[25] M. F. Boehm, L. Zhang, L. Zhi, M. R. McClurg, E. Berger, M. Wagoner,
D. E. Mais, C. M. Suto, P. J. A. Davies, R. A. Heyman, A. M. Nadzan, J. Med.
Chem. 1995, 38, 3146–3155.
We thank the Thome Foundation and the US National Cancer In-
stitute of the US National Institutes of Health for financial sup-
port of this work (1 R15 CA139364-01A2). Thanks are also given
to Dr. Natalya Zolotova of the High-Resolution Mass Spectrome-
try Laboratory at Arizona State University (ASU) Tempe (USA) and
Dr. John Greaves of the Mass Spectrometry Facility at University
of California Irvine (USA). Julie K. Furmick wishes to thank ASU
Tempe for a School of Life Sciences Undergraduate Research
(SOLUR) fellowship. Drew Browder was also supported by the
SOLUR Program. pCMX-hRARa and pTK-RARE(2)-Luc were gener-
ous gifts from Dr. Paul Thompson, School of Biomedical Sciences,
University of Ulster (Coleraine, UK).
[26] M. M. Faul, A. M. Ratz, K. A. Sullivan, W. G. Trankle, L. L. Winneroski, J.
Org. Chem. 2001, 66, 5772–5782.
Keywords: bexarotene · cutaneous T-cell lymphomas · retinoic
acid receptors · retinoid X receptors · rexinoids
[27] P. Y. Michellys, R. J. Ardecky, J. H. Chen, D. L. Crombie, G. J. Etgen, M. M.
Faul, A. L. Faulkner, T. A. Grese, R. A. Heyman, D. S. Karanewsky, K. Klaus-
ing, M. D. Leibowitz, S. Liu, D. A. Mais, C. M. Mapes, K. B. Marschke, A.
Reifel-Miller, K. M. Ogilvie, D. Rungta, A. W. Thompson, J. S. Tyhonas,
M. F. Boehm, J. Med. Chem. 2003, 46, 2683–2696.
[1] a) D. J. Mangelsdorf, K. Umesono, R. M. Evans in The Retinoids: Biology,
Chemistry and Medicine, 2nd Ed. (Eds.: M. B. Sporn, A. B. Roberts, D. S.
ChemMedChem 0000, 00, 1 – 17
ꢀ 2012 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim
www.chemmedchem.org
&15
&
ÞÞ
These are not the final page numbers!

C. E. Wagner et al.
MED
[28] P.-Y. Michellys, R. J. Ardecky, J.-H. Chen, J. D’Arrigo, T. A. Grese, D. S. Kar-
anewsky, M. D. Leibowitz, S. Liu, D. A. Mais, C. M. Mapes, C. Montrose-
Rafizadeh, K. M. Ogilvie, A. Reifel-Miller, D. Rungta, A. W. Thompson, J. S.
Tyhonas, M. F. Boehm, J. Med. Chem. 2003, 46, 4087–4103.
[29] P.-Y. Michellys, J. Darrigo, T. A. Grese, D. S. Karanewsky, M. D. Leibowitz,
D. A. Mais, C. M. Mapes, A. Reifel-Miller, D. Rungta, M. F. Boehm, Bioorg.
Med. Chem. Lett. 2004, 14, 1593–1598.
[30] S.-Y. Sun, P. Yue, M. I. Dawson, B. Shroot, S. Michel, W. W. Lamph, R. A.
Heyman, M. Teng, R. A. S. Chandraratna, K. Shudo, W. K. Hong, R. Lotan,
Cancer Res. 1997, 57, 4931–4939.
[37] K. L. Kiick, E. Saxon, D. A. Tirrell, C. R. Bertozzi, Proc. Natl. Acad. Sci. USA
2002, 99, 19–24.
[38] F. E. Condon, J. Org. Chem. 1956, 21, 761–763.
[39] D. J. Mangelsdorf, K. Umesono, S. A. Kliewer, U. Borgmeyer, E. S. Ong,
R. M. Evans, Cell 1991, 66, 555–561.
[40] P. E. Cramer, J. R. Cirrito, D. W. Wesson, C. Y. D. Lee, J. C. Karlo, A. E. Zinn,
B. T. Casali, J. L. Restivo, D. A. Goebel, M. J. James, K. R. Brunden, D. A.
Wilson, G. E. Landreth, Science 2012, 335, 1503–1506.
[41] G. M. Morris, R. Huey, W. Lindstrom, M. F. Sanner, R. K. Belew, D. S. Good-
sell, A. J. Olson, J. Comput. Chem. 2009, 30, 2785–2791.
[31] C. E. Wagner, P. W. Jurutka, P. A. Marshall, T. L. Groy, A. van der Vaart,
J. W. Ziller, J. K. Furmick, M. E. Graeber, E. Matro, B. V. Miguel, I. T. Tran, J.
Kwon, J. N. Tedeschi, S. Moosavi, A. Danishyar, J. S. Philp, R. O. Khamees,
J. N. Jackson, D. K. Grupe, S. L. Badshah, J. W. Hart, J. Med. Chem. 2009,
52, 5950–5966.
[42] P. F. Egea, A. Mitschler, D. Moras, Mol. Endocrinol. 2002, 16, 987–997.
[43] J. D. Love, J. T. Gooch, S. Benko, C. Li, L. Nagy, V. K. K. Chatterjee, R. M.
Evans, J. W. R. Schwabe, J. Biol. Chem. 2002, 277, 11385–11391.
[44] N. M. O’Boyle, M. Banck, C. A. James, C. Morley, T. Vnadermeersch, G. R.
Hutchison, J. Cheminf. 2011, 3, 33.
[32] J. Sakaki, M. Kishida, K. Konishi, H. Gunji, A. Toyao, Y. Matsumoto, T. Ka-
nazawa, H. Uchiyama, H. Fukaya, H. Mitani, Y. Arai, M. Kimura, Bioorg.
Med. Chem. Lett. 2007, 17, 4804–4807.
[45] B. M. Forman, K. Umesono, J. Chen, R. M. Evans, Cell 1995, 81, 541–550.
[46] a) F. K. Zimmerman, Mutat. Res. 1975, 31, 71–86; b) F. K. Zimmermann,
R. Kern, H. Rasenberger, Mutat. Res. 1975, 28, 381–388.
[33] D. R. Anderson, M. W. Mahoney, D. P. Philion, T. E. Rogers, M. J. Meyers,
G. Poda, S. G. Hegde, M. Singh, D. B. Reitz, K. K. Wu, I. P. Buchler, J. Xie,
W. F. Vernier, (Pharmacia Corp., St. Louis, MO, USA), PCT Int. Appl.
WO 2004/058762 A1, 2004.
[47] P. A. Marshall, CBE Life Sci. Educ. 2007, 6, 307–315.
[48] A. B. Pangborn, M. A. Giardello, R. H. Grubbs, R. K. Rosen, F. J. Timmers,
Organometallics 1996, 15, 1518–1520.
[34] K. Grohe, M. Schriewer, H.-J. Zeiler, K. G. Metzger, (Bayer Aktiengesell-
schaft, Leverkusen, Germany), U.S. Patent 4762844, 1988.
Received: June 27, 2012
[35] L. Bouveault, Bull. Soc. Chim. Fr. 1904, 31, 1322–1327.
[36] The ThalesNano H-Cube was used for this hydrogenation reaction.
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Transcriptional signaling: An analogue
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ChemMedChem 0000, 00, 1 – 17
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