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M. A. Omar et al. / Bioorg. Med. Chem. 20 (2012) 6989–7001
(NH2), 2258 (CN). MS: m/z 294.0, 100.0% (M++1); m/z 257.0, 24.6%
(M+—Cl), m/z 181.0, 12.6% (M+—m-ClPh). Anal. Calcd for C17H12ClN3
(293.07): C, 69.51; H, 4.12; Cl, 12.07; N, 14.30. Found: C, 59.55; H,
4.14; Cl, 12.02; N, 14.36.
5.1.12. 3-(1H-Benzo[d]imidazol-2-yl)-5-phenyl-1-(pyridin-4-yl)-
1H-pyrrol-2-amine (6b)
Crystallized from ethyl acetate as a green powder. Rf = 0.38
(petroleum ether/ethyl acetate/methanol, 1:1:1/2). Yield: 1.9 g
(70%); mp 135–137 °C; 1H NMR (DMSO-d6) d: 6.09 (s, 1H, CH),
7.80–7.09 (m, 9H, Aromatic protons), 7.98–8.16 (m, 2H, Aromatic
protons), 8.22 (br, NH2, D2O exchangeable), 8.60 (d, J = 4 Hz 2H,
CH pyridine), 12.59 (br, NH, benzimidazole, D2O exchangeable).
IR (cmꢀ1): 3393 (NH), 3323, 3260 (NH2). Anal. Calcd for C22H17N5
(351.15): C, 75.19; H, 4.88; N, 19.93. Found: C, 75.26; H, 4.85; N,
19.89.
5.1.7. 2-Amino-1-(4-chlorophenyl)-5-phenyl-1H-pyrrol-3-
carbonitrile (4f)
Crystallized from chloroform as a yellow powder. Rf = 0.34
(petroleum ether/ethyl acetate, 1:1). Yield: 79%; mp 98–100 °C;
1H NMR (DMSO-d6): d 6.41 (s, 1H, CH), 7.63–6.78 (m, 9H, Aromatic
protons), 8.22 (br, NH2, D2O exchangeable). IR (cmꢀ1): 3321, 3225
(NH2), 2208 (CN). MS: m/z 294.0, 10.6% (M++1); m/z 214.0, 1.8%
(M+—Ph—2H); m/z 104, 9.5% (M+—Ph—p-ClPh). Anal. Calcd for
5.1.13. 3-(1H-Benzo[d]imidazol-2-yl)-1-(3-bromophenyl)-5-
phenyl-1H-pyrrol-2-amine (6c)
C17H12ClN3 (293.07): C, 69.51; H, 4.12; Cl, 12.07; N, 14.30. Found:
Crystallized from ethyl acetate/methanol (2:5) as a brown pow-
der. Rf = 0.44 (petroleum ether/ethyl acetate/methanol, 1:1:1/2).
Yield: 1.8 g (72%); mp 192–194 °C; 1H NMR (DMSO-d6) d 6.45 (s,
1H, CH), d 7.48–8.05 (m, 13H, Aromatic protons), 8.32 (br, NH2,
D2O exchangeable), 12.55 (br, NH, benzimidazole, D2O exchange-
able). IR (cmꢀ1): 3374 (NH), 3318, 3249 (NH2). MS: m/z 415.0,
1.3% (M++2 –NH2); m/z 313.0, 4.3% (M++1—benzimidazole part).
Anal. Calcd for C23H17BrN4 (429.06): C, 64.35; H, 3.99; Br, 18.61;
N, 13.05. Found: C, 64.38; H, 4.01; Br, 18.59; N, 13.10.
C, 69.55; H, 4.13; Cl, 12.15; N, 14.28.
5.1.8. 2-Amino-1-(1H-benzo[d]imidazol)-5-phenyl-1H-pyrrole-
3-carbonitrile (4g)
Crystallized from chloroform as a brown powder. Rf = 0.28
(petroleum ether/ethyl acetate, 1:1). Yield: 82%; mp 122–124 °C;
1H NMR (DMSO-d6) d: 6.34 (s, 1H, CH), 7.69–7.33 (m, 9H, Aromatic
protons), 8.40 (br, NH2, D2O exchangeable) 12.55(br, NH, benz-
imidazole, D2O exchangeable). 13C NMR (500 MHz, DMSO-d6):
18.56, 66.76, 107.25, 114.93, 122.59, 128.75, 134.75, 135.35,
142.34, 164.55, 194.86. IR (cmꢀ1): 3359, 3283, 3206 (NH) and
(NH2), 2258 (CN). MS: m/z 300.0, 0.89% (M++1); m/z 183.0, 29.0%
(M++1—benzimidazole part); m/z 104, 100.0% (M++1—benzimid-
azole part—Ph—2H). Anal. Calcd for C18H13N5 (299.12): C, 72.23;
H, 4.38; N, 23.40. Found: C, 72.27; H, 4.40; N, 23.36.
5.1.14. 3-(1H-Benzo[d]imidazol-2-yl)-1-(4-bromophenyl)-5-
phenyl-1H-pyrrol-2-amine (6d)
Crystallized from chloroform/methanol (2:5) as a brown pow-
der. Rf = 0.37 (petroleum ether/ethyl acetate/methanol, 1:1:1/2).
Yield: 72%; mp 200–202 °C; 1H NMR (DMSO-d6) d 6.40(s, 1H, CH
pyrrol), d 6.93–6.91 (m, 5H, Aromatic protons), d 7.11–7.14 (m,
2H, Aromatic protons), d 7.43(d, J = 8.4 Hz, 2H, Aromatic protons),
d 7.59(d, J = 8.4 Hz, 2H, Aromatic protons), 8.34 (br, NH2, D2O
exchangeable), 12.65 (br, NH, benzimidazole, D2O exchangeable).
IR (cmꢀ1): 3423, 3299, 3212 (NH) and (NH2). MS: m/z 339.0,
0.02% (M++2—Ph—NH); m/z 273.0, 6.2% (M+—p-Br-Ph); m/z 144,
100.0% [M++2—p-Br-Ph—NH2—benzimidazole unit +2H], m/z 143,
48.9% [M++2—p-Br-Ph—NH2—benzimidazole unit +1H]. Anal. Calcd
for C23H17BrN4 (429.06): C, 64.35; H, 3.99; Br, 18.61; N, 13.05
Found: C, 64.37; H, 3.90; Br, 18.67 N, 13.10.
5.1.9. 1-((1H-benzo[d]imidazol-2-yl)methyl)-2-amino-5-
phenyl-1H-pyrrole-3-carbonitrile (4h)
Crystallized from chloroform as a green powder. Rf = 0.24
(petroleum ether/ethyl acetate, 1:1). Yield: 4.9 g (73%); mp 131–
133 °C; 1H NMR (DMSO-d6): d 5.07 (s, 2H, CH2), 6.21 (s, 1H, CH),
7.56–7.54 (m, 5H, H5+H6+H30+H4+H50), 7.68 (d, J = 6.9HZ,2H,
H20+H60), 7.68 (d, J = 6.9HZ, 2H, H4+H7), 8.35 (br, NH2, D2O
exchangeable), 12.52(br, NH, benzimidazole, D2O exchangeable).
13C NMR (500 MHz, DMSO-d6): 18.55, 39.79, 114.96, 128.77,
129.49, 134.78, 135.31,194.89. IR (cm-1): 3411, 3329, 3225 (NH),
(NH2), 2206 (CN), 1677 (C@N). Anal. Calcd for C19H15N5
(313.13): C, 72.83; H, 4.82; N, 22.35. Found: C, 72.79; H, 4.39;
N, 2.41.
5.1.15. 3-(1H-Benzo[d]imidazol-2-yl)-1-(3-chlorophenyl)-5-
phenyl-1H-pyrrol-2-amine (6e)
Crystallized from ethyl acetate/methanol (2:5) as a brown pow-
der. Rf = 0.39 (petroleum ether/ethyl acetate/methanol, 1:1:1/2).
Yield: 66%; mp 200–202 °C; 1H NMR (DMSO-d6) d 6.51 (s, 1H, CH
pyrrol), 7.52–7.49 (m, 5H, 2H benzimidazole +4H Aromatic pro-
tons), 7.63–7.60 (m, 4H, Aromatic protons), 7.65 (d, J = 7.65, 2H,
Aromatic protons), 7.98 (d, J = 7.65, 2H, Aromatic protons), 8.28
(br, NH2, D2O exchangeable), 12.25 (br, NH, benzimidazole, D2O
exchangeable). IR (cmꢀ1): 3331 (NH), 3274, 3258 (NH2). MS: m/z
382.0, 0.03% (M+—2H); m/z 272.0, 3.5% (M+—m-Cl-Ph); m/z 143,
59.1% [M++2 –m-Cl-Ph—NH2—benzimidazole unit + 1H]. Anal.
Calcd for C23H17ClN4 (384.11): C, 71.78; H, 4.45; Cl, 9.21; N,
14.56. Found: C, 71.72; H, 4.38; Cl, 9.18; N, 14.51.
5.1.10. General procedure for the preparation of compounds
(6a–h)
A mixture of o-phenylenediamine (0.8 g, 7.5 mmol) and pyrrole
derivatives (7.5 mmol) in 4 N HCl (20 mL) was refluxed for 6 h. The
reaction mixture was allowed to cool and then neutralized with
NH4OH. The resulting precipitate was filtered off and recrystallized
from appropriate solvent.
5.1.11. 3-(1H-Benzo[d]imidazol-2-yl)-5-phenyl-1-(pyridin-2-yl)-
1H-pyrrol-2-amine (6a)
Crystallized from ethyl acetate as a yellowish green powder.
Rf = 0.18 (petroleum ether/ethyl acetate/methanol, 1:1:1/2). Yield:
1.9 g (70%); mp 170–172 °C; 1H NMR (DMSO-d6) d: 6.26 (s, 1H, CH),
7.35–7.45 (m, 12H, Aromatic protons), d 8.56 (d, J = 4HZ, 1H, CH
pyridine), 8.22 (br, NH2, D2O exchangeable), 12.69 (br, NH, benz-
imidazole, D2O exchangeable). IR (cmꢀ1): 3455 (NH), 3376, 3325
(NH2). MS: m/z 350.0, 1.3% (M+—1H); m/z 273.0, 2.4% (M++1—py);
m/z 259.0, 10.3% (M++2—Ph–NH2—1H). Anal. Calcd for C22H17N5
(351.15): Anal. Calcd for C22H17N5 (351.15): C, 75.19; H, 4.88; N,
19.93. Found: C, 75.18; H, 4.79; N, 19.99.
5.1.16. 3-(1H-Benzo[d]imidazol-2-yl)-1-(4-chlorophenyl)-5-
phenyl-1H-pyrrol-2-amine (6f)
Crystallized from ethyl acetate/methanol (2:5) as a brown pow-
der. Rf = 0.36 (petroleum ether/ethyl acetate/methanol, 1:1:1/2).
Yield: 73%; mp 133–135 °C; 1H NMR (DMSO-d6) d 6.38 (s, 1H,
CH), 7.59–7.33 (m, 13H, Aromatic protons), 8.34 (br, NH2, D2O
exchangeable), 12.49 (br, NH, benzimidazole, D2O exchangeable).
IR (cmꢀ1): 3411, 3329, 3243, (NH) and (NH2). MS: m/z 383.0,
1.7% (M+—1H). Anal. Calcd for C23H17ClN4 (384.11): C, 71.78; H,
4.45; Cl, 9.21; N, 14.56. Found: C, 71.72; H, 4.48; Cl, 9.29; N, 14.61.