4388
K. Kusumi et al. / Bioorg. Med. Chem. Lett. 25 (2015) 4387–4392
H3C
H3C
Compound 3 showed excellent metabolic stability in the pres-
OH
Ca2+ IC50 = 0.039 µM
Binding IC50 = 0.0037 µM
logDa = 5.11
ence of rLMS (97% @ 15 min), as well as an extremely low clearance
and long half-life (CL: 0.1 ml/min/kg, T1/2: 25 h) in the rat PK study.
In contrast, the benzimidazole derivative 4 did not show enough
improved metabolic stability in the presence of rLMS (47% @
15 min) and its clearance was found to be high in rat (33 ml/
min/kg) compared with compound 2. Since compounds 3 and 4
showed close protein binding ratio (>99%), we considered that
the big difference in clearances of these two compounds would
be directly related to the difference of their in vitro metabolic
stabilities. These results therefore indicated that the alkyl chain
in compound 2 was a ‘soft-spot’ in terms of its metabolism and that
its urea moiety was not responsible for its poor metabolic stability.
Further modifications revealed that the transformation of the alkyl
chain to a phenyl ring was particularly effective for improving the
metabolic stability of these compounds and could therefore lead to
good PK profiles.
We sometimes see that high lipophilicity would correlate to
metabolic instability and/or high protein binding, and we found
that compound 3 which had the least logD value among these
compounds showed the most stable in rLMS. On the other hand,
we could not see any good correlation between lipophilicity and
protein binding, thus we considered that their protein binding
might be too high to discuss the difference.
H
N
N
O
O
F
O
NH2
O
Figure 1. Representative compound 1 from our previous report. aPredicted using
ADMET predictor (SimulationsPlus, Lancaster, CA, USA).
Table 1
Structure and profile of lead compound 212
H3C
OH
F
H3C
H
N
N
F
F
O
F
Ca2+ IC50
(
l
M)
Remaining
ratio (%) in rat
LMS, 15 min
Toxicity IC50
(lM)
logDa
hS1P2
1.7
rS1P2
0.072
Ratio
24
Human
40
Rat
9
37
4.78
We also conducted an SAR study to determine whether changes
to the 4-hydroxyl 4-phenyl piperidine moiety of compound 3
would be well tolerated. The results of this study are shown in
Table 3.
a
Predicted using ADMET predictor (SimulationsPlus, Lancaster, CA, USA).
difference in the species activity of the compound would have to
be overcome to allow for the clinical efficacy in humans to be accu-
rately estimated based on the efficacy in rat. The second issue with
compound 2 was its poor metabolic stability in rat liver micro-
somes (rLMS, with NADPH, remaining ratio = 9% at 15 min.). Com-
pound 2 also showed poor stability in human liver microsomes
(hLMS, with NADPH, remaining ratio = 40% at 15 min), and these
instabilities might suggest poor PK profile in both rat and human.
The third issue with compound 2 was its safety profile, with the
compound showing moderate levels of cellular cytotoxicity in
We initially investigated the impact of changing the bromine
atom on the left phenyl moiety to several other halogen atoms.
Although the 4-chloro derivative 5 showed similar antagonistic
activity to compound 3 (IC50 = 3.9
lM), the activity of the 4-fluoro
derivative 6 was weaker (IC50 = 9.5
l
M). Disappointingly, these
modifications had very little impact on the metabolic stability of
the compounds. Although the cytotoxicity of compound 5 was
found to be slightly less than that of 3 (IC50 = 50
lM), with com-
pound 6 being even less cytotoxic (IC50 = 69 M). Compound 5
l
was ultimately selected as the best of these compounds because
it was less toxic than 3 and showed better antagonistic activity
than 6. We also attempted to eliminate the hydroxyl group from
compound 3 to develop a better understanding of its contribution
to the activity and ADME properties of these compounds. The
replacement of the hydroxyl group in 3 with a fluoride or hydrogen
atom gave compounds 7 and 8, respectively, which did not show
any antagonist activity towards S1P2, despite the fact that they
showed excellent metabolic stability. These results therefore indi-
cate that the hydroxyl group on the piperidine moiety is essential
for the antagonistic activity of these compounds towards S1P2. We
observed the well-known relationship between lipophilicity and
toxicity among these compounds. Lower lipophilic compounds
tended to show weaker cytotoxicity. And compounds 7 and 8
which lost hydrophilic hydroxyl group showed higher logDs
(5.30 and 5.34, respectively) and relatively potent cytotoxicities
human hepatocytes (IC50 = 37 lM). To develop this series towards
a clinical candidate, it would therefore be necessary to overcome
these three issues as well as improving the potency of this series
towards S1P2 through a suitable SAR study. Although this series
of compounds showed lower potency than the 1,3-bis(aryloxy)
benzene derivatives, we thought that compound 2 was more
amenable to chemical modifications because of its low molecular
weight, and modular structure.
To improve the metabolic stability of compound 2, we ini-
tially attempted to identify the sites of its metabolism so that
we could focus our efforts towards the modification of these
sites to improve the stability. Unfortunately, however, our efforts
in this area proved to be unsuccessful because we found a large
number of oxidative metabolites in rat whole blood, which made
it difficult to identify the main site of metabolism. We subse-
quently proceeded to investigate the metabolic ‘soft-spot’ of
compound 2 using a chemical modification strategy. It was
envisaged that the alkyl chain moiety of 2 would be preferably
oxidized by cytochrome P450 enzymes to give a wide range of
oxidative metabolites. To prove this hypothesis, we synthesized
3, which had a bromophenyl moiety instead of the alkyl chain
found in compound 2 and evaluated its stability in the presence
of rLMS. This compound was also subjected to a rat pharmacoki-
netic (PK) study. Given that the urea moiety could also be a site
of metabolic instability by hydroxylation, we also synthesized
and tested the benzimidazole derivative 4 as a bioisostere of
the urea moiety. The results for these compounds are shown
in Table 2.
(IC50 = 36 and 43 lM, respectively). We considered the hydroxyl
group would be worth not only achieving the antagonistic potency
against S1P2, but also reducing lipophilicity as well as cytotoxicity.
We previously reported the development of a novel series of
highly potent S1P2 antagonists,11 and compound 1 is a representa-
tive example of the compounds belonging to this series (Table 4).
However, there were several issues associated with compound
1. Although compound 1 showed potent antagonistic activity
against hS1P2 (IC50 = 0.039 lM), this compound also experienced
similar problems to those described above for compound 2. For
example, compound 1 showed species-dependent differences in
its potency (IC50 values of 0.039 and 0.0048
lM for hS1P2 and
rS1P2), poor metabolic stability (24% in hLMS, 56% in rLMS) and