T. M. Chapman et al. / Bioorg. Med. Chem. Lett. 23 (2013) 3064–3069
3069
O
O
(a) or (b)
(c), (d), (e), (f)
N
N
N
N
O
N
O
N
N
N
N
N
H
N
N
H
N
N
H
N
R2
R2
Br
(34)
R2 =
R2 =
or
(31)
or
N
N
N
N
N
N
N
S
(36)
N
N
N
(33)
H
S
(35)
H
O
O
H2N
N
HN
N
N
(a)
(c), (d), (e)
N
N
H
N
(12)
N
H
N
(32)
N
(37)
N
N
N
N
S
H
Scheme 3. Reagents and conditions: (a) 2-(methylthio)pyrimidine-5-boronic acid pinacol ester, Pd(dppf)Cl2, aq Cs2CO3, dioxane, reflux; (b) 2-(methylthio)pyrimidine-4-
boronic acid pinacol ester, Pd(dppf)Cl2, aq Cs2CO3, dioxane, reflux; (c) m-chloroperoxybenzoic acid, CH2Cl2; (d) isopentylamine, dioxane, 65 °C; (e) 4 M HCl/dioxane; (f)
formaldehyde, AcOH, Na(OAc)3BH, THF.
References and notes
Kinase
Compound
1. World Health Organisation. World Malaria Report, 2010.
2. Petersen, I.; Eastman, R.; Lanzer, M. FEBS Lett. 2011, 1551.
3. Harper, J. F.; Harmon, A. Nat. Rev. Mol. Cell Biol. 2005, 6, 555.
17
24
28
4. Ward, P.; Equinet, L.; Packer, J.; Doerig, C. BMC Genomics 2004, 5, 79.
5. Zhao, Y.; Kappes, B.; Franklin, R. M. J. Biol. Chem. 1993, 268, 4347.
6. (a) Tewari, R.; Straschil, U.; Bateman, A.; Bohme, U.; Cherevach, I.; Gong, P.;
Pain, A.; Billker, O. Cell Host Microbe 2010, 8, 377; (b) Kato, N.; Sakata, T.;
Breton, G.; Le Roch, K. G.; Nagle, A., et al Nat. Chem. Biol. 2008, 4, 347.
7. Green, J. L.; Rees-Channer, R. R.; Howell, S. A.; Martin, S. R.; Knuepfer, E.; Taylor,
H. M.; Grainger, M.; Holder, A. A. J. Biol. Chem. 2008, 283, 30980.
8. Sebastian, S.; Brochet, M.; Collins, M. O.; Schwach, F.; Jones, M. L.; Goulding, D.;
Rayner, J. C.; Choudhary, J. S.; Billker, O. Cell Host Microbe 2012, 12, 9.
9. (a) Lemercier, G.; Fernandez-Montalvan, A.; Shaw, J. P.; Kugelstadt, D.; Bomke,
J.; Domostoj, M.; Schwarz, M. K.; Scheer, A.; Kappes, B.; Leroy, D. Biochemistry
2009, 48, 6379; For a review of CDPKs as drug targets see: (b) Kugelstadt, D.;
Derrer, B.; Kappes, B. Drug Discov. Infect. Dis. 2011, 2, 319 (Apicomplexan
parasites).
10. A high throughput screen of 35,422 compounds comprising a diverse set of
small molecules from a variety of commercial suppliers and 8100 kinase-
focused compounds (BioFocus) was performed using Kinase-GloÒ (Promega) to
measure ATP depletion resulting from the kinase reaction. Full length
recombinant PfCDPK1 was incubated with MyoA-Tail domain Interacting
Protein (MTIP) substrate and the amount of ATP remaining after 1 h was
measured by luminescence using a Pherastar plate reader (BMG Labtech).
11. Bullock, A. N.; Debreczeni, J. E.; Fedorov, O. Y.; Nelson, A.; Marsden, B. D.;
Knapp, S. J. Med. Chem. 2005, 48, 7604.
Figure 3. Kinase selectivity data on selected compounds screened at 1 lM inhibitor
concentration against a 73-member human kinase panel; green: <50% inhibition;
amber: 50–80% inhibition; red: >80% inhibition. Kinases hit by compound 17 are:
MKK1, RSK1, PKD1, CHK2, Aurora B, NUAK1, GCK, MLK1, Src, Lck, YES1, and VEGFR;
compound 24: RSK1 and HER4; compound 28: RSK1, CAMK1, PHK, NUAK1, and
HER4.
i.v. t1/2
Clint
2.0 h
2984 mL/h/kg
84%
Oral %F
ppb
86%
Figure 4. Mouse pharmacokinetic and plasma-protein binding data for compound
17.
12. Shimizu, H.; Yamasaki, T.; Yoneda, Y.; Muro, F.; Hamada, T.; Yasukochi, T.;
Tanaka, S.; Toki, T.; Yokoyama, M.; Morishita, K.; Iimura, S. Bioorg. Med. Chem.
Lett. 2011, 21, 4550.
13. Bouloc, N.; Large, J. M.; Smiljanic, E.; Whalley, D.; Ansell, K. H.; Edlin, C. E.;
Bryans, J. S. Bioorg. Med. Chem. Lett. 2008, 18, 5294.
14. Ojo, K. K.; Larson, E. T.; Keyloun, K. R.; Castaneda, L. J.; DeRocher, A. E.;
Inampudi, K. K., et al Nat. Struct. Mol. Biol. 2010, 17, 602 (PDB ref: 3I7C).
15. P. falciparum EC50 values were measured using an in vitro model of malaria
parasite growth. Compounds were diluted into 2% DMSO and added to
parasites 24 h post-invasion in a 96-well plate and incubated under static
conditions. Cells were recovered 48 h later and processed for FACS analysis
using hydroethidine to stain parasite DNA. Data was acquired using CellQuest
Pro software on a FACSCalibur (Becton Dickinson). Growth inhibition was
In summary, a series of imidazopyridazines which are potent
inhibitors of PfCDPK1 has been identified. Leading compounds
have shown promising in vitro anti-parasite activity, in vitro ADME
and kinase selectivity profiles and in vivo pharmacokinetics in
mouse, with modest in vivo efficacy in a P. berghei mouse model
of malaria. Improving the in vitro anti-parasite activity, in vivo effi-
cacy and PK profile of this series is the subject of further work and
will be described in a future publication.
calculated
using
the
following
formula:
%
growth
Acknowledgments
inhibition = (1 À [parasitaemia of culture/parasitaemia of control culture])
Â100.
We thank David Tickle and Sadhia Mahmood at MRCT for
in vitro ADME, David Whalley for testing against PbCDPK1 and
PvCDPK1 and Munira Grainger at NIMR for provision of parasites.
We are grateful to the Medicines for Malaria Venture for providing
support for this project, including Paul Willis, Didier Leroy and Si-
mon Campbell for their input and Sergio Wittlin at the Swiss Trop-
ical and Public Health Institute for conducting P. berghei in vivo
efficacy studies. Mouse pharmacokinetic studies were performed
by Pharmidex. A.A.H. is funded by the MRC (U117532067) and
the EU FP7 Grant agreement 242095 (EviMalar).
16. To establish activity of the compounds against recombinant P. berghei CDPK1
and P. vivax CDPK1 enzymes, ATPase activity was measured using a biosensor
sensitive to ADP (rhodamine-labeled ParM, gift of M. Webb, NIMR). The
progress of the reactions was monitored by an increase in fluorescence
corresponding to accumulation of ADP using a Pherastar plate reader (BMG
Labtech).
17. Kinase selectivity profiling was carried out at the National Centre for Protein
Kinase Profiling in the MRC Protein Phosphorylation Unit at the University of
Dundee.