GlycoPEG Tags
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from Vector Laboratories, Burlingame, USA and labelled with Hilyte
Plus 647 and Hilyte Plus 555 protein-labelling kits from AnaSpec, Free-
mont, USA. Lectin incubations were performed using the Fast Frame in-
cubation chambers from Whatman, Kent, UK. Fluorescence measure-
ments were performed using an Agilent G265BA microarray scanner
system, Agilent Technologies, Santa Clara, USA. Quantification was per-
formed using ProScanArray Express software, Perkin–Elmer, Shelton,
USA. SEM images were recorded using a JSM-6490LV, implemented
with an ion beam sputtering unit.
(97%) by ultra performance liquid chromatography (UPLC) from the re-
action crude by derivatisation with a 9-fluorenylmethoxycarbonyl (Fmoc)
reporter group. The isolated compound was analysed by MALDI-TOF
MS using pre-spotted MALDI targets with a-cyano-4-hydroxy-cinnamic
acid (HCCA) matrix (Anchor Chip, Bruker Daltonics): m/z: 6232.04
[M+Na], most abundant peak.
Core-type a-1,6-fucosylation: A solution (200 mL) of compound 8 (0.3 mg,
46 nmol), GDP-fucose (200 nmol), and C. elegans core-type a-1,6-fucosyl-
transferase (55 mg) in MES buffer (80 mm, pH 6.5), MnCl2 (20 mm) was
incubated at 258C for 24 h. The resulting mixture was heated at 958C for
5 min. The precipitate was removed, the solution was purified and the
buffer exchanged to water using an Amicon spin filter of 10 kDa. The
Chemo-enzymatic synthesis of PEG-tagged Lewis X derivative 6
PEG-tagged monosaccharide 26: Trichloroacetimidate 24 (50 mg,
0.01 mmol) and 1 (18 mg, 0.003 mmol) were dissolved in dry CH2Cl2
(2 mL) in the presence of 4 ꢁ MS. The mixture was stirred for 1 h,
cooled to ꢀ208C and then trimethylsilyl trifluoromethanesulfonate
(TMSOTf; 1 mL, 0.007 mmol) was added. The mixture was stirred for 2 h
from ꢀ20 to 08C, then quenched with a drop of Et3N and diluted with
CH2Cl2 (10 mL). The reaction mixture was evaporated and the product
was precipitated by stirring the crude material in CH2Cl2/Et2O (1:50) at
isolated polymer was freeze-dried to obtain 12 as
a white powder
(0.3 mg, 95% yield). MALDI-TOF MS: m/z: 6377.16 [M+Na].
Core-type a-1,3-fucosylation: A solution (200 mL) of compound 8 (0.3 mg,
46 nmol), GDP-fucose (100 nmol), and A. thaliana core-type a-1,3-fuco-
syltransferase (70 mg) in MES buffer (80 mm, pH 6.5), MnCl2 (20 mm)
was incubated at 258C for 40 h. The resulting mixture was heated at
958C for 5 min. The precipitate was removed, the solution was purified
and the buffer exchanged to water using an Amicon spin filter of 10 kDa.
The isolated polymer was freeze-dried to obtain 13 as a white powder
(0.3 mg, 95% yield). MALDI-TOF MS: m/z: 6377.28 [M+Na].
08C to afford compound 26 as
a white solid (40 mg, 80% yield).
MALDI-TOF: m/z: 5354.94 [M+Na], most abundant peak.
Amino-polyethylene glycolyl 2-acetamido-2-deoxy-b-d-glucopyranoside
(4):
A solution of 26 (0.046 g, 0.0086 mmol) and ethylenediamine
(0.4 mL) in nBuOH (0.6 mL) was irradiated three times with microwaves
at 1208C for 30 min. Solvent was evaporated and the reaction crude was
subjected to acetylation with Ac2O (0.4 mL) in pyridine (0.8 mL) at 08C
for 18 h. The solvent was evaporated and the product was precipitated by
stirring the crude material in CH2Cl2/Et2O (1:50) at 08C to afford the
compound as yellowish solid (0.039 g). This material was dissolved in
THF (1 mL) and added to a suspension of Na in liquid NH3 at ꢀ788C.
The mixture was stirred for 15 min at this temperature and then the reac-
tion was quenched by the addition of NH4Cl. The solvent was then
evaporated. Purification by size-exclusion chromatography (Biogel-P2,
NH4HCO3 as eluent) afforded product 4 as a colourless oil (23 mg, 60%
yield). MALDI-TOF MS: m/z: 4962.38 [M+Na], most abundant peak.
Core-type a-1,6-fucosylation and a-1,3-fucosylation: A solution (200 mL)
of compound 12 (0.15 mg, 23 nmol), GDP-fucose (100 nmol) and A. thali-
ana core-type a-1,3-fucosyltransferase (70 mg) in MES buffer (80 mm,
pH 6.5) was incubated at 258C for 40 h. The resulting mixture was heated
at 958C for 5 min. The precipitate was removed, the solution was purified
and the buffer exchanged to water using an Amicon spin filter of 10 kDa.
The isolated polymer was freeze-dried to obtain 14 as a white powder
(0.1 mg, 67% yield). MALDI-TOF MS: m/z: 6523.20 [M+Na].
3D microarray preparation
Functionalisation of aminosiloxane surfaces: Amino slides (Nexterion
slide-A star) were blocked with succinic anhydride solution (5.0 g) in N-
methyl-2-pyrrolidone (NMP) (250 mL) and borate buffer (30 mL, 0.2m),
pH 9) for 45 min at RT. The slides were washed with phosphate-buffered
saline (PBS) and water and dried with Ar. Activation of the carboxylic
acid slides as succinimide esters was performed by treatment with 0.2m
1-ethyl-3-(3-dimethylaminopropyl)carbodiimide (EDC) and 0.05m NHS
in anhydrous DMF for 2 h at RT. The slides were rinsed with anhydrous
DMF and dried with Ar. After the washing step with dry DMF, the surfa-
ces were ready for the printing of the glycan arrays.
b-1,4-Galactosylation: A solution (200 mL) of 4 (2 mg, 0.39 mmol), UDP-
Gal (uridine 5’-diphosphogalactose disodium salt; 1.6 mg), bovine serum
albumin (BSA; 1 mg), bovine milk b-1,4-galactosyltransferase (50 mU;
EC 2.4.1.22), alkaline phosphatase (2.3 U; EC 3.1.3.1) and MnCl2
(10 mm) in 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid (HEPES)
buffer (50 mm, pH 7.4), was incubated at 378C for 20 h. The resulting
mixture was heated at 958C for 5 min. The yellowish precipitate was re-
moved and the solution was purified and buffer exchanged to water using
an Amicon spin filter of 10 kDa. The isolated polymer was freeze-dried
to obtain compound 5 as a yellowish powder (1.7 mg, 85% yield).
MALDI-TOF MS: m/z: 5119.143 [M+Na].
Microarray printing: Glycoconjugates 3–15 and the aminopentyl-linked
glycans 16–23 were printed at different concentrations 200, 100, 50 and
25 mm in phosphate buffer (100 mm) that contained 0.002% of Tween-20
at pH 8.4, on NHS-functionalised glass slides with a non-contact spotter.
A number (3) of 270 pL drops of the buffered solutions were printed
with a distance of 300 mm. Five replicates were printed of each sample as
21ꢂ20 matrixes. After printing, the slides were kept in a 75% humidity
chamber (saturated NaCl solution) at 258C for 18 h. Unreacted NHS
groups were quenched by placing the slides in a 50 mm solution of PEG-
600-NH2 in sodium borate buffer 50 mm, pH 9.0, for 2 h. The standard
washing of the slides was performed with PBST (PBS solution that con-
tained 0.5% Tween 20), PBS and water. The slides were dried in a slide
spinner.
a-1,3-Fucosylation: A solution (250 mL) of 5 (0.4 mg, 75 nmol), GDP-Fuc
(0.5 mmol), C. elegans Lewis X type a-1,3-fucosyltransferase (CeFuT6;
69 mg) and MnCl2 (20 mm) in MES buffer ( 80 mm, pH 6.5) was incubated
at 258C for 40 h. The resulting mixture was heated at 958C for 5 min.
The precipitate was removed and the solution was purified and the
buffer exchanged to water using an Amicon spin filter of 3 kDa. The iso-
lated polymer was freeze-dried to obtain compound 6 as a white powder
(0.3 mg, 75% yield). MALDI-TOF MS: m/z: 5266.52 [M+Na].
Chemo-enzymatic synthesis of core-type fucosylated PEG-tagged N-
glycan derivatives 12, 13 and 14
Labelled lectin incubation of the 3D microarray: Lectin stock solutions
(4.0–5.0 mgmLꢀ1) were diluted 1:2 with phosphate buffer 300 mm, pH 8.5
and labelled with 1 mL of Hilyte Plus 647 and 555 (cy5/cy3 analogues)
protein-labelling kit from AnaSpec, Freemont, USA, for each 100 mL of
sample for 2 h at RT. Excess amounts of dye were removed by buffer ex-
change to PBS by employing 3 kDa Amicon filters, Millipore, Carrigtwo-
hill, Co. Cork, Ireland. The labelled lectins were stored as 1–2 mgmLꢀ1
solutions in PBS at 48C (D/P ratio: 1–2). ConA, RCA, AAL, WFL, VVL
lectins and anti-HRP were labelled with the cyanine-3 analogue and
WGA, ECA, LCA, GNA, NPL and BS II were labelled with the cya-
nine-5 analogue.
Bi-antennary N-glycan coupling to the PEG tag: A mixture of glycan 21
(0.23 mg, 0.16 mmol), the N-Boc-protected NHS-activated PEG
2
(1.00 mg, 0.20 mmol) and N,N-diisopropylethylamine (DIPEA; 5 mL,
28.70 mmol) in dry DMF (0.2 mL) was stirred for 2 h at RT and then the
excess amount of activated polymer was removed by addition of Tenta-
gel-NH2 resin (20 mg, 8.6 mmol) overnight at RT. The resin was filtered
off and the solvent removed under vacuum. The crude was re-dissolved
in dH2O (200 mL) and filtered using Amicon spin filters (10 kDa). The
polymeric conjugate was treated with aqueous 10% trifluoroacetic acid
(TFA) solution (0.5 mL) for 2 h at 378C. The solution was then filtered
using Amicon spin filters (10 kDa) to remove the excess amount of TFA.
The polymer aqueous solution was lyophilised to obtain compound 8 as a
white solid (0.78 mg, 76% yield). The coupling conversion was calculated
The microarrays were compartmentalised with a 16-well gasket. Lectin
solutions were prepared in PBST (PBS with 0.05% Tween-20) with
Chem. Eur. J. 2013, 19, 4776 – 4785
ꢀ 2013 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim
4783