46
Z. Eliáš et al. / Journal of Molecular Structure 1043 (2013) 43–51
Fig. 2. The molecular structure (ORTEP 50% probability level) of 4m. Selected interatomic distances (Å); angles and interplanar angles (°): for molecule a: O1 C1 1.235(4), O2
C15 1.206(5), C1 N1 1.387(5), N1 C2 1.400(4), C2 C3 1.355(5), C3 C4 1.470(5), C4 C1 1.454(5), C4 C5 1.360(5), C5 C6 1.441(5), C6 S1 1.741(4), S1 C7 1.730(4), C6 C9 1.379(5);
C1 N1 C2 109.8(3), N1 C1 C4 106.7(3), C1 C4 C5 128.0(3), C4 C5 C6 132.7(4), C5 C6 S1 128.8(3) and phenyl ring vs. heterocyclic ring amido containing 87.82; for molecule b:
O4 C101 1.218(4), O5 C115 1.204(4), C101 N2 1.387(5), N2 C102 1.391(5), C102 C103 1.355(5), C103 C104 1.466(5), C104 C101 1.481(5), C104 C105 1.351(5), C105 C106
1.438(5), C106 S3 1.742(4), S3 C107 1.733(4), C107 C110 1.453(5), C110 S4 1.727(4), S4 C111 1.705(4); C101 N2 C102 110.4(3), N2 C101 C104 105.9(3), C101 C104 C105
127.2(3), C104 C105 C106 133.9(4), C105 C106 S3 127.9(3) and interplanar angle of phenyl ring vs. heterocyclic ring containing amido group is 72.71.
Polycrystalline samples were placed under quartz plate and the
emission spectra were recorded using front face geometry.
the most and the least stable conformers of Z isomer is
1.13 kcal molꢁ1, while only 0.67 kcal molꢁ1 for E isomers. Finally,
Z isomer can be expected as the reaction product in the syntheses
of compound 2, preferably in s-trans conformations, while the ex-
pected conformation of eventual E photoisomer is not so clear, as
2.3. Quantum chemical calculations
three of four conformers differ mutually less than 0.28 kcal molꢁ1
.
The theoretical calculation based on DFT were carried out. The
ground state geometry was optimized using B3LYP functional in
combination with 6-311G(d,p) basis set. TD DFT calculations of exci-
tation energies were carried out with the same xc functional and the
broader basis set 6-311+G(2d,p). Solvent effect of dimethylsulfoxide
was taken into account through non-equilibrium PCM. The same xc
functional, but only 6-311G(d,p) basis set was used for excited state
TD DFT optimization of model compounds 1, 2 and 4 with only
hydrogens (not ethyl esters) in positions 3 of pyrrolinone ring. All
calculation codes came from Gaussian09W program suite [21].
The detailed screening the ground state energy minima with re-
spect to various conformations of compound 4 was not done, but
the computed energy difference between Z and E isomers (both
in s-trans/s-trans arrangements) is 6.685 kcal molꢁ1, i.e. a destabi-
lization of E with respect to Z isomer is similar as for compound
2 (6.510 kcal molꢁ1).
Single crystals of 2m and 4m were of sufficient quality for X-ray
diffraction techniques. Crystallographic data for 2m: C19H17NO3S,
M = 339.40, monoclinic, P21/c, a = 12.0090(8), b = 7.7050(6), c =
17.9859(9) Å, b = 90.373(5)°, Z = 4, V = 1664.19(19) Å3, Dc = 1.355 -
g cmꢁ3
,
l
= 0.211 mmꢁ1
,
Tmin/Tmax = 0.952/0.969; ꢁ12 6 h 6 15,
ꢁ10 6 k 6 9, ꢁ23 6 l 6 20; 11,032 reflections measured (hmax
27.15°), 10,955 independent (Rint = 0.0307), 2890 with I > 2 (I),
3. Results and discussion
=
r
3.1. Molecular structure
217 parameters, S = 1.096, R1(obs. data) = 0.0691, wR2(all data) =
0
0.1743; max., min. residual electron density = 1.381, ꢁ0.571 eAÅꢁ3
Crystallographic data for 4m: C23H19NO3S2, M = 421.51, tri-
.
There are two possible isomers of compound 1 and each of
them can theoretically exist in two conformational arrangements
with respect to an orientation of side carboxy ester group with re-
spect to pyrrolinone ring. Among them s-trans conformer is pre-
ferred for Z isomer and s-cis for E isomer from sterical reasons
[12]. In the case of (bi)thiophene derivatives the third structural
(conformational) aspect has to be taken into account – an orienta-
tion of thiophene ring, which can be also described by s-trans and
s-cis conformations. Thus the dependence of relative molecular en-
ergy on DFT optimized geometry was carried out for all eight pos-
sible isomers/conformers of compound 2 (Table 1).
clinic, P-1, a = 8.6640(6), b = 11.3269(6), c = 21.3571(15) Å,
a =
75.581(4), b = 86.090(6),
c
= 80.784(4)°, Z = 4, V = 2002.8(2) Å3,
Dc = 1.398 g cmꢁ3
,
l
= 0.291 mmꢁ1, Tmin/Tmax = 0.924/0.981; ꢁ11
6 h 6 11, ꢁ14 6 k 6 14, ꢁ27 6 l 6 27; 33,050 reflections measured
(hmax = 27.4°), 32,963 independent (Rint = 0.1211), 5403 with
I > 2r(I), 523 parameters, S = 1.119, R1(obs. data) = 0.0756, wR2(all
data) = 0.1176; max., min. residual electron density = 0.430,
0
ꢁ0.661 eAÅꢁ3
.
Compound 2m (Fig. 1) crystallize in the monoclinic space group
P21/c with four molecules within the unit cell, on the other hand
the compound 4m crystallizes in the triclinic space group P-1 with
four molecules within the unit cell and two independent molecules
(Fig. 2). In the molecules of both compounds, the interatomic
angles inside of central heterocyclic rings confirm that these rings
are planar with a high degree of conjugation while the C4AC5
bonds are attributed as a multiple ones. The direct comparison of
the structure of 2m and 4m with recently obtained and in detail
described structure of 1m [12] with the same central ring can be
done.
Z isomers of 2 are planar in the area of exocyclic C@C and CAC
bonds; the most stable conformer is s-trans both on ester and thi-
ophene. The energy destabilization induced by conformational
change is almost additive, i.e. 0.27 kcal molꢁ1 per ester group rota-
tion and 0.86 kcal molꢁ1 per thiophene rotation. Distorted
E
isomers are at least 6.23 kcal molꢁ1 less stable, i.e. considerably
more than for compound 1 (2.38 kcal molꢁ1) [12], and their confor-
mational preferences are a bit complicated, as they depend on
gentle sterically driven equilibria. The energy difference between