3778
R. Yang et al. / Tetrahedron Letters 54 (2013) 3777–3780
(Boc)2O, Et3N
CH2Cl2
synthesis and peptide ligation. Under low-power microwave irra-
MsCl, Et3N
CH2Cl2
diation, the ligation rate between 6 and 7 was dramatically accel-
erated. After 7 h, the yield had reached 93%. For the ligation
between 6 and 7, two side products with a mass of 634.45 and
676.4, respectively, were observed on many occasions (peak d
and e in Fig. 2). They were likely derived from the cysteinyl-pep-
tide 7 as they were also present when other PMT peptides with dif-
ferent C-terminal residues were ligated with 7. The nature of these
side products is unknown.
O
quantitative
O
OH
OH
>99%
S
N
Boc
N
Boc
N
H
O
3
2
1
KSAc,
DMF, 83%
NaOH, H2O,
MeOH, 95%
TFA, TIS,
tBuSH, CH2Cl2
S
N
SH
N
O
Boc
Boc
5
4
To optimize the pH values for PMT-mediated ligation, the liga-
tion between 6 and 7 at different pH (4, 5, 6, and 7) was compared
(Supplementary data, Figs. S5 and S6). The ligation was performed
in the presence of MMA under microwave irradiation. After 7 h, the
ligation yields at pH 4, 5, 6, and 7 were 81%, 93%, 87%, and 67%,
respectively. These results indicated that our ligation system pre-
ferred mild acidic conditions (pH 5–6). However, the reaction at
pH 7 seemed to give a lower amount of the two side products men-
tioned above.
SH
S
Cl
+
N
N
Cl
H2
H2
Scheme 1. Chemical synthesis of the PMT linker and loading of the linker onto
2-ClTrt resin.
To evaluate the effect of the thiol additives, three different thi-
ols were tested for the ligation between 6 and 7 at pH 5.0 and
microwave irradiation (Supplementary data, Figs. S7 and S8). It
was found that the ligation rate was similar when MMA or 4-mer-
captophenyl acetic acid (MPAA) was used. Both reactions were
nearly complete within 7 h. However, the ligation with MPAA
showed less clean HPLC profiles and more side products, possibly
originating from 7, were observed. When sodium 2-mercaptoeth-
ylsulfonate (MESNa) was used, the yield was only 66% after 7 h.
These results showed that MMA was a better thiol additive for
our ligation system.
group of compound 4 was removed by saponification to give N-
protected PMT 5. The overall yield of compound 5 was 78%, there-
by allowing the possibility of preparing the linker in large quantity.
For the loading of the linker to the 2-ClTrt resin, compound 5 was
deprotected, dissolved in dry CH2Cl2 and added to the resin which
had been pretreated with 30% TFA in CH2Cl2. The loading was com-
plete within 1 h (see Supplementary data for the details of the
loading process). Fmoc-Gly-OH was then coupled onto the resin.
After removing the Fmoc group, a quantitative ninhydrin test13
was performed with the resin to determine its substitution, which
was 0.52 mmol/g. The substitution was comparable to many of the
commercial resins and was suitable for SPPS. A model peptide, H-
LSTEG-PMT (6) was synthesized with the PMT-2-ClTrt resin fol-
lowing standard Fmoc-chemistry. After cleavage, the analytical
HPLC of the crude peptide 6 showed a relatively clean product.
The minor side product with a mass of 56 Da higher was due to
the S-alkylation of 6 by a t-butyl cation during cleavage. The ana-
lytical HPLC and ESI-MS of purified 6 are shown in Figure 1.
To test whether PMT peptides can be used for chemical ligation,
a study using 6 and H-CAKAFA-NH2 (7) was performed. Peptides 6
In summary, the optimal conditions for PMT-mediated ligations
are microwave irradiation, MMA as the thiol additive and pH 5–6.
The ligation of 6 and 7 under these optimized conditions is shown
in Figure 2.
To test whether the newly developed PMT ligation works for
other non-glycine C-terminal residues, peptides H-LSTEX-PMT
(X = A, L, F, S, and V) were synthesized in the same way as peptide
6. These peptides were ligated with peptide 7 with MMA as the
thiol additive at pH 5.0 under microwave irradiation (Table 1). Ex-
cept for b-branched Val, the PMT peptides with the other four C-
terminal residues ligated efficiently with peptide 7. These ligations
were complete within 12 h with yields between 80% and 90%. The
ligation between the Val peptide and 7 was slower, and only
reached 29% yield after 12 h.
(1.6 mg, 16.6 mM) and 7 (3.3 mg, 34 mM) were dissolved in 160 lL
of ligation buffer containing 6 M guanidine hydrochloride
(GdnÁHCl), 0.2 M NaOAc, 25 mM tris(2-carboxyethyl)phosphine
(TCEP), and 2% v/v methyl mercaptoacetate14 (MMA), pH 5.0. The
above ligations at various temperatures were compared (Supple-
mentary data, Figs. S3 and S4). The reaction proceeded slowly at
room temperature and the yield was 45% after 24 h. At 37 and
42 °C, the ligation yield reached 83% and 90%, respectively, after
24 h. This indicated that significant activation energy might be re-
quired for N?S acyl transfer to occur. It is well-known that micro-
wave irradiation can promote dramatically the rate of peptide
Figure 2. (A) The C18 analytical HPLC of the ligation between 6 and 7 under the
optimized conditions. Peak a: peptide 7; peak b: peptide 6; peak c: ligation product,
H-LSTEGCAKAFA-NH2; peaks d and e indicating molecular masses of 634.45 and
676.4 as detected by ESI-MS, respectively, are unidentified; asterisk peaks: buffer
content and non-peptide materials. Gradient: 40% of buffer B in buffer A for 40 min.
(B) ESI-MS of the ligation product. Monoisotopic mass, calcd: 1095.54; observed:
[M+H]+ = 1096.43.
Figure 1. (A) C18 analytical HPLC of purified 6. Gradient: 40% of buffer B (90%
aqueous acetonitrile containing 0.045% TFA) in buffer A (H2O containing 0.045%
TFA) for 40 min. (B) ESI-MS of 6. Monoisotopic mass, calcd: 604.29; observed:
[M+H]+ = 605.57.