Communication
ChemComm
T. Van Den Bergh, E. Snip, M. Lutz, F. El Oualid and H. Ovaa, Chem.
Sci., 2013, 4, 4494–4498.
6 S. Virdee, P. B. Kapadnis, T. Elliott, K. Lang, J. Madrzak,
D. P. Nguyen, L. Riechmann and J. W. Chin, J. Am. Chem. Soc.,
2011, 133, 10708–10711.
7 S. Virdee, Y. Ye, D. P. Nguyen, D. Komander and J. W. Chin, Nat.
Chem. Biol., 2010, 6, 750–757.
Different from all the previously reported methods, ubiquitin
ligation is facilitated by an auxiliary which is installed on a
recombinant protein containing a genetically incorporated Anl.
The method combines the advantageous features of Muir’s
Na-auxiliary-mediated site-specific ubiquitination approach and
Chin’s GOPAL approach. The key ubiquitination step in our
approach is based on the highly efficient and selective NCL
which allows the use of completely unprotected reaction partners
for ligation in aqueous buffer. The only step that requires
protection in our scheme is the installation of the auxiliary group
on the substrate protein. This is different from the GOPAL
approach in which the key ubiquitination reaction step involves
Ag+-mediated activation of a C-terminal thioester24 in the acyl
ubiquitin for condensation with the amine partner in DMSO and
requires protection of all the uninvolved amines in both reaction
partners, and the large size of the reaction components also
limits the efficiency of condensation. Our work shows an inter-
esting new application of the Anl genetic incorporation method.
A limitation of our approach lies with that Anl would substitute
for all Met residues in the target protein. Nevertheless, Met is a
rare amino acid and can often be replaced by other amino acids
such as Leu without affecting protein function.25 The synthesis of
K48-linked diubiquitin with native isopeptide linkage at an over-
all yield of 35% demonstrates the robustness of our approach.
This, coupled with the relative easiness to express Anl-containing
proteins, makes our method an excellent addition to the list of
chemical ubiquitination methods which together have made the
difficult-to-make ubiquitinated proteins more accessible for the
concerned research community.
˜
8 C. Castaneda, J. Liu, A. Chaturvedi, U. Nowicka, T. A. Cropp and
D. Fushman, J. Am. Chem. Soc., 2011, 133, 17855–17868.
9 K. S. Ajish Kumar, L. Spasser, S. Ohayon, L. A. Erlich and A. Brik,
Bioconjugate Chem., 2011, 22, 137–143.
10 (a) C. Chatterjee, R. K. McGinty, B. Fierz and T. W. Muir, Nat. Chem. Biol.,
2010, 6, 267–269; (b) J. Chen, Y. Ai, J. Wang, L. Haracska and Z. Zhuang,
Nat. Chem. Biol., 2010, 6, 270–272; (c) F. Meier, T. Abeywardana, A. Dhall,
N. P. Marotta, J. Varkey, R. Langen, C. Chatterjee and M. R. Pratt, J. Am.
Chem. Soc., 2012, 134, 5468–5471; (d) B. Fierz, C. Chatterjee,
R. K. McGinty, M. Bar-Dagan, D. P. Raleigh and T. W. Muir, Nat. Chem.
Biol., 2011, 7, 113–119.
11 A. Shanmugham, A. Fish, M. P. A. Luna-Vargas, A. C. Faesen, F. El Oualid,
T. K. Sixma and H. Ovaa, J. Am. Chem. Soc., 2010, 132, 8834–8835.
12 (a) S. Eger, M. Scheffner, A. Marx and M. Rubini, J. Am. Chem. Soc.,
2010, 132, 16337–16339; (b) N. D. Weikart and H. D. Mootz, Chem-
BioChem, 2010, 11, 774–777; (c) S. Sommer, N. D. Weikart,
A. Brockmeyer, P. Janning and H. D. Mootz, Angew. Chem., Int.
Ed., 2011, 50, 9888–9892.
13 (a) E. M. Valkevich, R. G. Guenette, N. A. Sanchez, Y.-C. Chen, Y. Ge
and E. R. Strieter, J. Am. Chem. Soc., 2012, 134, 6916–6919;
(b) V. H. Trang, E. M. Valkevich, S. Minami, Y.-C. Chen, Y. Ge and
E. R. Strieter, Angew. Chem., Int. Ed., 2012, 51, 13085–13088.
14 (a) X. Li, T. Fekner, J. J. Ottesen and M. K. Chan, Angew. Chem., Int.
Ed., 2009, 48, 9184–9187; (b) N. Haj-Yahya, M. Haj-Yahya,
˜
C. A. Castaneda, L. Spasser, H. P. Hemantha, M. Jbara, M. Penner,
A. Ciechanover, D. Fushman and A. Brik, Angew. Chem., Int. Ed.,
2013, 52, 11149–11153.
¨
15 (a) R. K. McGinty, M. Kohn, C. Chatterjee, K. P. Chiang, M. R. Pratt
and T. W. Muir, ACS Chem. Biol., 2009, 4, 958–968; (b) B. Fierz,
S. Kilic, A. R. Hieb, K. Luger and T. W. Muir, J. Am. Chem. Soc., 2012,
134, 19548–19551.
16 M. Haj-Yahya, N. Eltarteer, S. Ohayon, E. Shema, E. Kotler, M. Oren
and A. Brik, Angew. Chem., Int. Ed., 2012, 51, 11535–11539.
17 P. E. Dawson, T. W. Muir, I. Clark-Lewis and S. B. H. Kent, Science,
1994, 266, 776–779.
18 (a) P. Botti, M. R. Carrasco and S. B. H. Kent, Tetrahedron Lett., 2001,
42, 1831–1833; (b) D. W. Low, M. G. Hill, M. R. Carrasco, S. B. H. Kent
and P. Botti, Proc. Natl. Acad. Sci. U. S. A., 2001, 98, 6554–6559;
(c) J. Offer, C. N. C. Boddy and P. E. Dawson, J. Am. Chem. Soc., 2002,
124, 4642–4646; (d) J. Offer, Biopolymers, 2010, 94, 530–541.
This work is supported by the Agency for Science, Technol-
ogy and Research (A*STAR) of Singapore (grant No. SERC 112
120 2017) and Nanyang Technological University.
Notes and references
1 (a) M. Hochstrasser, Nat. Cell Biol., 2000, 2, E153–E157; (b) C. M. Pickart,
Annu. Rev. Biochem., 2001, 70, 503–533; (c) O. Kerscher, R. Felberbaum 19 (a) H. Katayama, H. Hojo, T. Ohira and Y. Nakahara, Tetrahedron Lett.,
and M. Hochstrasser, Annu. Rev. Cell Dev. Biol., 2006, 22, 159–180;
(d) M. Hochstrasser, Nature, 2009, 458, 422–429; (e) Z. J. Chen and
2008, 49, 5492–5494; (b) H. Katayama, H. Hojo, I. Shimizu, Y. Nakahara
and Y. Nakahara, Org. Biomol. Chem., 2010, 8, 1966–1972.
L. J. Sun, Mol. Cell, 2009, 33, 275–286; ( f ) F. Ikeda, N. Crosetto and 20 (a) A. J. Link, M. K. S. Vink and D. A. Tirrell, J. Am. Chem. Soc., 2004,
I. Dikic, Cell, 2010, 143, 677–681.
126, 10598–10602; (b) A. J. Link, M. K. S. Vink, N. J. Agard,
J. A. Prescher, C. R. Bertozzi and D. A. Tirrell, Proc. Natl. Acad. Sci.
U. S. A., 2006, 103, 10180–10185; (c) D. M. Abdeljabbar, T. J. Klein,
S. Zhang and A. J. Link, J. Am. Chem. Soc., 2009, 131, 17078–17079;
(d) J. T. Ngo, J. A. Champion, A. Mahdavi, I. C. Tanrikulu,
K. E. Beatty, R. E. Connor, T. H. Yoo, D. C. Dieterich,
E. M. Schuman and D. A. Tirrell, Nat. Chem. Biol., 2009, 5, 715–717.
2 (a) C. Chatterjee, R. K. McGinty, J.-P. Pellois and T. W. Muir, Angew.
Chem., Int. Ed., 2007, 46, 2814–2818; (b) R. K. McGinty, J. Kim,
C. Chatterjee, R. G. Roeder and T. W. Muir, Nature, 2008, 453,
812–816.
3 (a) R. Yang, K. K. Pasunooti, F. Li, X.-W. Liu and C.-F. Liu, J. Am.
Chem. Soc., 2009, 131, 13592–13593; (b) R. Yang, K. K. Pasunooti,
F. Li, X.-W. Liu and C.-F. Liu, Chem. Commun., 2010, 46, 7199–7201. 21 T. W. Muir, D. Sondhi and P. A. Cole, Proc. Natl. Acad. Sci. U. S. A.,
4 (a) K. S. A. Kumar, M. Haj-Yahya, D. Olschewski, H. A. Lashuel and 1998, 95, 6705–6710.
A. Brik, Angew. Chem., Int. Ed., 2009, 48, 8090–8094; (b) K. S. A. Kumar, 22 J. P. Tam, Y.-A. Lu, C.-F. Liu and J. Shao, Proc. Natl. Acad. Sci. U. S. A.,
L. Spasser, L. A. Erlich, S. N. Bavikar and A. Brik, Angew. Chem., Int. Ed., 1995, 92, 12485–12489.
2010, 49, 9126–9131; (c) K. S. A. Kumar, S. N. Bavikar, L. Spasser, T. Moyal, 23 E. C. B. Johnson and S. B. H. Kent, J. Am. Chem. Soc., 2006, 128,
S. Ohayon and A. Brik, Angew. Chem., Int. Ed., 2011, 50, 6137–6141. 6640–6646.
5 (a) F. El Oualid, R. Merkx, R. Ekkebus, D. S. Hameed, J. J. Smit, A. De 24 S. Aimoto, Biopolymers, 1999, 51, 247–265.
Jong, H. Hilkmann, T. K. Sixma and H. Ovaa, Angew. Chem., Int. Ed., 25 H. Yang, L. Liua, M. Wang, J. Li, N. S. Wang, G. Du and J. Chen,
2010, 49, 10149–10153; (b) R. Merkx, G. De Bruin, A. Kruithof,
Appl. Environ. Microbiol., 2012, 78, 7519–7526.
7974 | Chem. Commun., 2014, 50, 7971--7974
This journal is ©The Royal Society of Chemistry 2014