Inorganic Chemistry Communications
The first observation of cis and trans isomers for bibenzo[d]imidazole-
based compounds influenced by halogen substituent effects
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Jiao Geng, Tao Tao, Hui-Qing Chen, Wei Huang
State Key Laboratory of Coordination Chemistry, Nanjing National Laboratory of Microstructures, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210093, PR China
a r t i c l e i n f o
a b s t r a c t
Article history:
A pair of bibenzo[d]imidazole-based cis–trans positional isomers have been obtained via the condensation
between biphenyl-3,3′,4,4′-tetraamine and 3,5-dichloro-2-hydroxybenzaldehyde, and they can be isolated by
the following spontaneous crystallization in N,N-dimethylformamide (DMF) and manual separation. Halogen
substituent effects are believed to be responsible for the successful isolation of cis and trans isomers, which
could be further supported by density function theory (DFT) calculations. To our knowledge, this is the first
structural report on the cis–trans isomerism for this family of compounds.
Received 3 January 2014
Accepted 24 January 2014
Available online 31 January 2014
Keywords:
Cis–trans isomers
Bibenzo[d]imidazoles
Crystal structures
DFT computations
© 2014 Elsevier B.V. All rights reserved.
Recently, bibenzo[d]imidazole derivatives [1] are significant
heterocyclic compounds and they are particularly useful as biologically
active compounds and intermediates in pharmaceutical chemistry [2].
As we know, there is cis–trans constitutional isomerism in this family
of compounds because the two protons of imidazole rings (NH) can
point toward the same (cis) or the opposite (trans) direction of molecu-
lar plane. Unlike the traditional cis–trans isomerism in the double-bond
system, free rotation of the central single bond between the two benzo
[d]imidazole units can be restricted also generating the cis–trans tau-
tomerism, because of the large steric hindrance effects of the attached
groups on both sides. Constigurational isomerism [3–6], as one of the
geometrical isomerisms, is not only important to the fine chemical man-
ufacturers but also to other areas of chemistry. Tautomers in distinctive
isomeric forms have different properties such as pharmacological
effects, crystal habits, helicity and chirality in the solid state and in the
bulk [7–10]. Single-crystal X-ray diffraction method is proved to be the
most powerful tool to characterize various geometrical isomerisms by
its measured bond lengths and angles, dihedral and torsion angles, etc.
The subtle alteration of functional groups, the different tautomeric
forms and crystallographic arrangements help to decide their properties.
In this paper, an isomeric pair of bibenzo[d]imidazole-based
compounds (cis and trans positional isomers of BBI-4Cl), together with
a cis isomer of BBI-4Br, have been obtained via the classical condensa-
tion [11] between biphenyl-3,3′,4,4′-tetraamine and 3,5-dichloro-2-
hydroxybenzaldehyde (or 3,5-dibromo-2-hydroxybenzaldehyde) and
the following spontaneous crystallization [12–14] in DMF and mechan-
ical separation. Halogen substituent effects, intramolecular O\H⋯N
hydrogen bonds and molecular planarity are believed to help the suc-
cessful formation of cis and trans isomers of BBI-4Cl simultaneously
[15]. Distinguishable single-crystal growing habits of them make possi-
ble the separation and structural characterization. DFT calculations have
been done to further compare the differences between the molecular
conformations and spectral properties of these cis and trans isomers.
To the best of our knowledge, this is the first structural report on
cis–trans isomerism for this family of compounds.
Compounds BBI-4Cl and BBI-4Br, having the same bibenzo[d]imidazole/
phenol skeleton shown in Scheme 1, were prepared in satisfactory yields
(62 and 56%) [16]. It is worthwhile to note that this synthetic method has
the advantages of easy to operate, easy work-up and few by-products.
When DMF was used as the reaction solvent and 4 Å molecular sieves
were added as the catalyst in the synthetic process, the yields have been
slightly increased. The proposed formation mechanism [11,17] for com-
pounds BBI-4Cl and BBI-4Br was given in Scheme SI1. At first, the con-
densation between biphenyl-3,3′,4,4′-tetraamine and halogenated
salicylaldehyde afforded the bis-Schiff base 1, and then the intramolecular
nucleophilic addition reaction took place to produce bis-imidazolidine 2.
Finally, the bisimidazole compound was obtained by the oxidative
cyclodehydrogenation of intermediate 2.
UV–Vis absorption and fluorescence emission spectra of compounds
BBI-4Cl and BBI-4Br in their methanol solutions with the same concen-
tration of 1.0 × 10−4 mol/L were recorded at room temperature,
respectively, in order to compare the differences originated from their
molecular structures. Similar optical properties have been shown in
this case, which agree well with the following theoretical results. As il-
lustrated in Fig. 1, due to the presence of large delocalized π-system,
strong absorption bands at 359 (ε = 64600) and 361 (ε = 70900) nm
are assigned to the π–π* transition between the bibenzo[d]imidazole
rings and the phenol units in compounds BBI-4Cl and BBI-4Br, which
are analogous to the previously reported aromatic bis(o-aminoanils)
compounds (340–360 nm) [11,17]. The fluorescence spectra of com-
pounds BBI-4Cl and BBI-4Br at room temperature illustrate a large
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