Journal of the American Chemical Society
Article
110 °C for 30 min. The solvent was evaporated under reduced
pressure and the solid was purified by column chromatography (SiO2;
CH2Cl2/CH3OH 9:1) to give the product as a dark blue solid (195
176.87. 19F NMR (282 MHz, CD3OD): −75.18. HR-ESI-MS. Calcd
for [C46H60N5O2]+: 714.4742, found: 714.4758.
Spectroscopic Methods. All aqueous solutions were prepared
using deionized water with resistivity 18.2 mΩ cm−1, obtained using a
Milli-Q water purification system. All solvents were supplied by
Aldrich and used as received. Piperazine-N,N′-bis(2-ethanesulfonic
acid) (PIPES) and 99.999% KCl were purchased from Calbiochem.
Stock solutions of compound 3 and ligand DHX1 in DMSO were
prepared in the 1−8 mM range and stored at −20 °C in 1 mL aliquots
and thawed immediately before each experiment. The copper
complexes were prepared by dissolving the ligand in 1 mL of
CH3OH, adding 1 equiv of CuCl2 to each solution, and stirring
overnight. The solvent was evaporated, and the resulting sensor was
redissolved in 1 mL DMSO and stored at −20 °C. All spectroscopic
measurements were conducted in aqueous buffer containing 50 mM
PIPES (pH 7.0) and 100 mM KCl, with the exception of those
performed in CH3OH and at varying pH values. UV−vis spectra were
acquired using a Cary 50 spectrometer using quartz cuvettes from
Starna (1 cm path length). Fluorescence spectra were acquired on a
Photon Technology International fluorimeter. All measurements were
conducted on solutions maintained at 25 °C by circulating water baths.
Extinction coefficients of the ligands and sensors were determined by
using 1−3 μM solutions in aqueous buffer. Fluorescence quantum
yields were determined using the same solutions, λex = 650 nm.
Fluorescence emission spectra were integrated from 660 to 900 nm.
Quantum yields were referenced to IR780, which has a reported
quantum yield of 0.076 in CH3OH, λex = 725 nm.37
Anaerobic Sample Preparation. Degassed aliquots of the stock
solutions of each sensor were brought into an anaerobic chamber
under a nitrogen atmosphere (O2 < 1 ppm) dedicated to work with
aqueous solutions (hereafter called the “wet box”). Solutions
containing 5 μM Cu-3 and 2 μM CuDHX1 were prepared using 2
mL of either degassed aqueous buffer or CH3OH in gastight cuvettes.
Angeli’s salt (Na2N2O3, Cayman Chemical) was used as the source of
HNO, because it decomposes rapidly (t1/2 = 3 min) at pH = 7 to
produce HNO and NaNO2.38 Solutions of Angeli’s salt (4 mM) were
prepared in the wet box in degassed 10 mM NaOH (2 mL) and
brought out of the wet box in a gastight syringe. NO gas was removed
from the wet box in a gastight syringe and injected into the headspace
of each gastight cuvette before measuring fluorescence.
Cyclic Voltammetry. Cyclic voltammograms were measured in a
three-electrode cell with a 2.0 mm diameter glassy carbon working
electrode, a platinum auxiliary electrode, and Ag/Ag+ pseudoreference
electrode in acetonitrile. The solvent contained 0.1 M n-Bu4NPF6 as
the supporting electrolyte. The measurements were performed at
room temperature with a VersaSTAT3 potentiostat from Princeton
Applied Research operated with V3 studio software. Measurements
were carried out at a scan rate of 200 mV s−1 on quiescent solutions
that had been sparged with N2 for 5 min. All data were referenced to
the Fc/Fc+ couple as an internal standard.
Electron Paramagnetic Resonance (EPR) Spectroscopy. Low-
temperature X-band EPR spectra (77 K, 9 GHz) were collected with a
Bruker EMS spectrometer equipped with an ER 4199HS cavity and a
Gunn diode microwave source. EPR samples were prepared
anaerobically. Solid DHX1 and 3 were brought into a glovebox. 0.8
equiv of Cu(MeCN)4BF4 were added to 400 μM DHX1 or 3 in 350
μL CH3OH, stirred overnight, and brought out of the glovebox in
sealed EPR tubes. Angeli’s salt (100 equiv) was prepared in 10 mM
NaOH anaerobically and brought out of the wet box in a gastight
syringe. When CuCl2 was used to prepare CuDHX1 for the HNO
reactivity EPR studies, different results were observed (Figure S21).
For the NO reactivity test, degassed aliquots from the stock solution of
CuDHX1 were brought into a wet box. Solutions containing 400 μM
CuDHX1 were prepared in 350 μL of degassed CH3OH and brought
out of the wet box in sealed EPR tubes. NO gas was taken out of the
wet box in a gastight syringe and injected into the headspace of the
EPR tube. Spectra were simulated in Matlab using the solid-state/
frozen-solution functionality (‘pepper’) implemented in EasySpin.39
Analyte Selectivity Studies. Selectivity of the fluorescence turn-
on toward biologically relevant analytes was determined by comparing
1
3
mg, yield 76%). H NMR (300 MHz, CD3OD): 1.04 (t, J = 7.4 Hz,
3H), 1.80 (s, 6H), 1.89−1.96 (m, 4H), 2.69−2.82 (m, 4H), 4.26 (t, 3J
= 7.2 Hz), 4.79 (s, 2H), 6.40 (d, 3J = 14.7 Hz, 1H), 6.74 (d, 4J = 2 Hz,
1H), 6.91 (d, 4J = 2 Hz, 1H), 7.36−7.41 (m, 1H), 7.45−7.49 (m, 2H),
3
7.60−7.63 (m, 1H), 7.70 (s, 1H), 8.69 (d, J = 14.5 Hz, 1H). LRMS
(ESI). Calcd for [C29H32NO3]+: 442.2, found 442.2.
Synthesis of (E)-2-(2-(8-(chloromethyl)-6-hydroxy-2,3-dihydro-
1H-xanthen-4-yl)vinyl)-3,3-dimethyl-1-propyl-3H-indol-ium iodide
(2). Thionyl chloride (75 μL, 1.03 mmol) and dry pyridine (83 μL,
1.03 mmol) were dissolved in dry CH2Cl2 (1 mL) and cooled to 0 °C.
Compound 1 (195 mg, 0.34 mmol) was dissolved in dry CH2Cl2 (1
mL) and dry DMF (0.1 mL) and added slowly to the mixture of
pyridine and thionyl chloride. After 30 min, H2O (0.1 mL) was added,
and the mixture was dried with Na2SO4. The solvent was evaporated
under reduced pressure. The dark blue solid was dissolved in CH2Cl2/
CH3OH (9:1) and filtered through a plug of SiO2 with CH2Cl2/
CH3OH (9:1, 200 mL). The solvent was evaporated, and the crude
product was used immediately. LRMS (ESI). Calcd for
[C29H31ClNO2]+: 460.2, found 460.1.
Synthesis of (E)-2-(2-(8-((1,4,8,11-tetraazacyclotetradecan-1-yl)-
methyl)-6-hydroxy-2,3-dihydro-1H-xanthen-4-yl)vinyl)-3,3-dimeth-
yl-1-propyl-3H-indol-1-ium trifluoroacetate (3). A solution of crude
compound 2 in dry CH3CN (3 mL) was added to 1,4,8,11-
tetraazacyclotetradecane (cyclam, 136 mg, 0.68 mmol). Diisopropyl-
ethylamine (0.12 mL, 0.68 mmol) was added, and the mixture was
heated to reflux. After 30 min, the solvent was evaporated, and the
residue was purified by RP-HPLC according to the following protocol:
constant flow rate 3 mL min−1; isocratic flow 2% B, 0−5 min; gradient,
35−95% B, 10−25 min. The product was collected between 16.5−16.8
min. All equivalent fractions recovered from independent runs were
combined and lyophilized to dryness to yield the TFA salt of
1
compound 3 (46 mg, 18% over two steps). Mp: 110−120 °C. H
NMR (500 MHz, DMSO-d6): 0.96 (t, 3J = 7.4 Hz, 3H), 1.72 (s, 7H),
1.81 (m, 7H), 2.67 (m, 10H), 3.10 (m, 10H), 3.80 (s, 2H), 4.35 (t, 3J
3
3
= 7.1 Hz, 2H), 6.53 (d, J = 15 Hz, 1H), 6.92 (m, 1H), 7.42, (t, J =
7.7 Hz, 1H), 7.51 (t, 3J = 8.3 Hz, 1H), 7.66 (d, 3J = 8.0 Hz, 1H), 7.72
(d, 3J = 7.7 Hz, 2H), 8.55 (d, J = 15 Hz, 1H). 13C NMR (125 MHz,
3
DMSO-d6): 11.08, 20.10, 20.92, 23.60, 27.59, 28.55, 40.44, 45.95,
49.56, 50.24, 101.59, 103.73, 113.12, 113.38, 113.71, 115.75, 115.96,
118.11, 120.48, 122.76, 125.85, 126.85, 127.96, 128.97, 136.75, 141.65,
141.88, 144.50, 154.73, 158.13, 158.42, 158.65, 158.90, 160.62, 161.12,
177.01. 19F NMR (282 MHz, CD3OD): −75.31. HR-ESI-MS. Calcd
for [C39H54N5O2]+: 624.4273, found: 624.4259.
Synthesis of (E)-2-(2-(8-((8-benzyl-1,4,8,11-tetraazacyclotetrade-
can-1-yl)methyl)-6-hydroxy-2,3-dihydro-1H-xanthen-4-yl)vinyl)-3,3-
dimethyl-1-propyl-3H-indol-1-ium trifluoroacetate (DHX1). A sol-
ution of compound 3 (46 mg, 0.06 mmol) in CH3CN (3 mL) and
(bromomethyl)benzene (4 μL, 0.03 mmol) were combined.
Diisopropylethylamine (22 μL, 0.12 mmol) was added, and the
reaction mixture stirred at room temperature for 2 h. The solvent was
evaporated, and the product was purified by RP-HPLC according to
the following protocol: constant flow rate 3 mL min−1; isocratic flow
2% B, 0−5 min; gradient, 35−95% B, 10−25 min. The product was
collected between 18.1−18.5 min. All equivalent fractions recovered
from independent runs were combined and lyophilized to dryness to
yield the TFA salt of compound DHX1 (14.2 mg, 28%). Mp: 115−120
°C. 1H NMR (500 MHz, DMSO-d6): 0.97 (t, 3J = 7 Hz, 3H), 1.72 (s,
6H), 1.80 (m, 6H), 2.06 (m, 2H), 2.66 (m, 3H), 2.72 (m, 5H), 3.14
3
3
(m, 8H), 3.83 (s, 3H), 4.35 (t, J = 7 Hz, 2H), 6.52 (d, J = 15 Hz,
3
1H), 6.91 (m, 1H), 7.00 (m, 1H), 7.40 (m, 6H), 7.50 (t, J = 7, 1H),
7.66 (d, J = 5 Hz, 1H), 7.72 (m, 2H), 8.54 (d, J = 15 Hz, 1H). 13C
NMR (125 MHz, DMSO-d6): 11.09, 20.09, 20.89, 23.60, 27.57, 27.62,
28.50, 40.43, 45.91, 50.20, 50.24, 53.71, 57.10, 101.27, 103.55, 113.07,
113.32, 113.52, 113.69, 113.85, 115.69, 116.11, 118.06, 120.42, 122.76,
125.63, 126.78, 128.29, 128.44, 128.93, 130.06, 130.37, 131.40, 141.64,
141.85, 144.41, 154.66, 158.02, 158.04, 158.51, 158.81, 160.80, 161.29,
3
3
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dx.doi.org/10.1021/ja500315x | J. Am. Chem. Soc. 2014, 136, 4697−4705