Beilstein J. Org. Chem. 2013, 9, 2898–2909.
NHCH2CH2O), 3.58–3.48 (m, 2H, H5’5”), 3.24–3.01 (m, 2H, CH2CH(NH2)CH2), 3.83–3.71 (m, 4H, OCH2CH2OP),
CH2CH(NH2)CH2), 2.33–2.18 (m, 1H, H2’), 2.06–1.93 (m, 1H, 3.70–3.56 (m, 6H, CH2CH(NH2)CH2, CH2CH(NH2)CH2,
H2’’); MALDI–TOFMS (m/z): [M + H]+ calcd for NHCH2CH2O), 3.55–3.43 (m, 2H, CH2CH(NH2)CH2),
C39H45N8O13P2, 895.26; found, 895.65; [M + Na]+ calcd for 3.03–2.95 (m, 2H, H5’5’’), 2.01–1.86 (m, 1H, H2’), 1.85–1.74
C39H44N8NaO13P2, 917.24; found, 917.51; [M + K]+ calcd for (m, 1H, H2’’); MALDI–TOFMS (m/z): [M + H]+ calcd for
C39H44KN8O13P2, 933.21; found, 933.48; [M − H]− calcd for C34H41N3O12P2, 746.22; found, 746.44; [M + Na]+ calcd for
C39H43N8O13P2, 893.24; found, 893.14.
C34H41N3NaO12P2, 768.21; found, 768.43; [M − H]− calcd for
C34H40N3O12P2, 744.21; found, 744.41.
Conjugate 4
Partly deprotected by TBAF treatment conjugate 25 was Conjugate 6
subjected to RPC as described for partly deprotected by TBAF Partly deprotected by TBAF treatment conjugate 29 was
conjugate 20 using gradient of EtOH in water (0–75%). The dissolved in 20% aqueous EtOH (10 mL per 0.05 g of the fully
Boc protective group was removed by formic acid as described protected derivative), and the solution was applied to a column
for conjugate 2. The residue was dissolved in 20% aqueous with DEAE Sephadex A-25 in 20% aqueous EtOH. Elution was
EtOH (10 mL per 0.05 g of fully protected derivative), and the performed with a linear gradient of NH4HCO3 (0–0.5 M) in
solution was applied to a column with DEAE Sephadex A-25 in 20% aqueous EtOH. The appropriate fractions were pooled and
20% aqueous EtOH. Elution was performed with a linear evaporated. Nucleobase deprotection and the subsequent purifi-
gradient of NH4HCO3 (0–1.0 M) in 20% aqueous EtOH. After cation by RPC were performed as described for conjugate 1.
drying, 0.125 g of conjugate 4 (0.15 mmol, 60% calcd to 9 After drying, 0.06 g of conjugate 6 (0.09 mmol, 50% calcd to
taken into the coupling reaction) was obtained. Rf: 0.59 (iPr/ 15 taken into the coupling reaction) was obtained. Rf: 0.38 (iPr/
H2O, 4/1); 31P NMR (D2O) 0.75 (s, 1P), −0.09 (s, 1P); H2O, 4/1); 31P NMR (D2O) 0.85 (s); 1H NMR (D2O) 7.78 (s,
1H NMR (D2O) 7.54 (d, J = 7.8, 2H, H-Ar), 7.48–7.15 (m, 9H, 1H, H8-Gua), 7.36 (d, J = 8.1, 1H, H-Trp), 7.27 (d, J = 8.1, 1H,
H–Ar, H–Trp), 7.06 (s, 1H, H–Trp), 7.00 (t, J = 7.2, 1H, H-Trp), 7.07 (s, 1H, H-Trp), 7.04 (t, J = 7.5, 1H, H-Trp), 6.94
H–Trp), 6.83 (t, J = 7.2, 1H, H–Trp), 4.52–4.42 (m, 1H, H4’), (t, J = 7.5, 1H, H-Trp), 6.01 (t, J = 6.8, 1H, H1’), 4.61–4.55 (m,
4.01 (t, J = 7.1, 1H, CH(NH2)CH2), 3.96–3.89 (m, 1H, H3’), 1H, H4’), 4.18–4.13 (m, 1H, H3’), 4.10 (t, J = 7.0, 1H,
3.88–3.80 (m, 2H, H1’1”), 3.79–3.50 (m, 8H, OCH2CH2OP), CH(NH2)CH2), 4.05–3.94 (m, 2H, CH(NH2)CH2), 3.83–3.69
3.48–3.36 (m, 4H, NHCH2CH2O), 3.33–3.15 (m, 5H, (m, 2H, H5’5’’), 3.44–3.23 (m, 4H, OCH2CH2OP), 3.22–3.04
NHCH2CH2O, CH(NH2)CH2), 3.13–2.98 (m, 2H, H5’5”), (m, 4H, NHCH2CH2O), 2.61–2.51 (m, 1H, H2’), 2.44–2.35
2.96–2.83 (m, 1H, CH(NH2)CH2), 2.04–1.80 (m, 2H, H2’2”); ((m, 1H, H2’’); MALDI–TOFMS (m/z): [M + H]+ calcd for
MALDI–TOFMS (m/z): [M + H]+ calcd for C38H49N4O14P2, C25H34N8O9P, 621.22; found, 621.26; [M + Na]+ calcd for
847.27; found, 847.46; [M + Na]+ calcd for C38H48N4NaO14P2, C25H35N8NaO9P, 643.20; found, 643.24; [M + K]+ calcd for
869.25; found, 869.43; [M + K]+ calcd for C38H48KN4O14P2, C25H34KN8O9P, 659.17; found, 659.20.
885.23; found, 885.42; [M − H]− calcd for C38H47N4O14P2,
845.26; found, 845.60; [M − 2H + Na]+ calcd for Conjugate 7
C38H46N4NaO14P2, 867.24; found, 867.50.
Partly deprotected by TBAF treatment conjugate 31 was
dissolved in minimal amount of EtOH and treated with concen-
trated (25%) aqueous ammonia for 48 h under stirring at room
Conjugate 5
Partly deprotected by TBAF treatment conjugate 28 was temperature. After evaporation, the residue was dissolved in
subjected to RPC as described for partly deprotected by TBAF 40% aqueous EtOH (10 mL per 0.05 g of fully protected deriva-
conjugate 20 using gradient of EtOH in water (0–65%). The tive), and subjected to anion exchange chromatography as
TFA protective group was removed by concentrated (25%) described for conjugate 1. The appropriate fractions were
aqueous ammonia for 3 h. After evaporation, target product 5 pooled and evaporated. The residue was treated with 80%
was purified by anion exchange chromatography as described aqueous acetic acid (5 mL per 0.1 g of the fully protected
for conjugate 4. After drying, 0.09 g of conjugate 5 derivative) for 30 min, diluted tenfold with water and chilled.
(0.125 mmol, 50% calcd to 9 taken into the coupling reaction) The solution was neutralized by addition of concentrated (25%)
was obtained. Rf: 0.67 (iPr/H2O, 4/1); 31P NMR (D2O) 0.73 (s, aqueous ammonia. Target conjugate 7 was purified by RPC as
1P), −0.64 (s, 1P); 1H NMR (D2O) 7.65 (d, J = 8.2, 2H, H-Ar), described for conjugate 1. After drying, 0.015 g of conjugate 7
7.62–7.52 (m, 6H, H-Ar), 7.45 (d, J = 7.8, 1H, H-Trp), 7.43 (t, (0.035 mmol, 25% calcd to 30 taken into the coupling reaction)
J = 7.9, 2H, H-Ar), 7.30 (d, J = 7.9, 1H, H-Trp), 7.13 (s, 1H, was obtained. Rf: 0.1 (EtOH); 31P NMR (D2O) 0.75 (s);
H-Trp), 7.05 (t, J = 7.5, 1H, H-Trp), 6.97 (t, J = 7.5, 1H, 1H NMR (D2O) 8.04 (s, 1H, H8-Gua), 6.29 (t, J = 6.7, 1H,
H-Trp), 4.48–4.41 (m, 1H, H4’), 3.97–3.83 (m, 4H, H3’, 1’1’’, H1’), 4.73–4.68 (m, 1H, H4’), 4.24–4.18 (m, 1H, H3’), 4.01 (t,
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