L. Bai et al. / Bioorg. Med. Chem. 22 (2014) 2333–2338
2337
completion of the reaction with the ninhydrin test; (7) Fmoc
deprotection with 20% (v/v) piperidine in DMF (5 min); (8) Fmoc
deprotection with 20% (v/v) piperidine in DMF (30 min). After
complete peptide assembly, Fmoc protection was removed by
treatment with piperidine in DMF. The resin was washed with
DMF (3 ꢁ 5 ml), CH2Cl2 (3 ꢁ 5 ml), MeOH (3 ꢁ 5 ml), CH2Cl2
(3 ꢁ 5 ml), MeOH (3 ꢁ 5 ml) and was dried in a desiccator. Peptides
were cleaved from the resin by treatment with TFA/EDT/anisole
(3.8:0.1:0.1) for 2 h at 26 °C (8 ml of the mixture/g of resin), and
the cleavage procedure was repeated twice. The filtrates were
combined and precipitated with ice-cold ether/hexane (1:1). The
crude peptides were purified by semi-preparative HPLC. Each pep-
tide was at least 98% pure as assessed by analytical reversed-phase
HPLC. Molecular weights were confirmed by MS.
(s, 1H). 13C NMR (125 MHz, DMSO-d6) d (ppm): 15.45, 19.85,
20.04, 22.22, 23.88, 25.22, 26.66, 28.77, 30.70, 31.40, 31.49,
51.35, 52.27, 52.56, 114.85, 115.99, 118.38, 121.92, 125.91,
126.26, 127.73, 133.27, 136.92, 138.30, 142.83, 155.58, 156.71,
157.83, 158.07, 158.32, 170.00, 170.61, 172.99.
4.2.5. H-Dmt-D-Arg-1-Nal-Lys-NH2 (5)
170.4 mg. 1H NMR (300 MHz, DMSO-d6) d: 0.76 (s, 2H),
0.94–1.07 (m, 2H), 1.34 (s, 2H), 1.53–1.69 (m, 4H), 2.15 (s, 6H),
2.78–2.84 (m, 5H), 2.95–3.03 (t, J = 11.49 Hz, 1H), 3.08–3.18 (t,
J = 10.20 Hz, 1H), 3.63–3.66 (d, J = 10.53 Hz, 1H), 3.88 (s, 1H),
4.15–4.24 (m, 2H), 4.63 (s, 1H), 6.38 (s, 2H), 7.15 (s, 4H), 7.33–
7.41 (m, 4H), 7.48–7.58 (m, 2H), 7.75–7.77 (d, J = 7.02 Hz, 2H),
7.87–7.90 (d, J = 7.62 Hz, 2H), 7.97–8.00 (d, J = 8.10 Hz, 1H), 8.19–
8.24 (t, J = 6.18 Hz, 4H), 8.55–8.58 (d, J = 8.4 Hz, 1H), 9.05 (s, 1H).
13C NMR (75 MHz, DMSO-d6) d: 19.83, 22.30, 24.02, 26.67, 28.54,
30.67, 31.39, 34.73, 51.36, 52.24, 52.49, 53.41, 114.84, 121.89,
123.62, 125.11, 125.48, 125.99, 127.05, 127.55, 128.53, 131.39,
133.39, 133.44, 138.29, 155.57, 156.68, 158.44, 168.45, 170.29,
170.66, 173.35.
4.2.1. H-Dmt-D-Arg-Dmp-Lys-NH2 (1)
73.1 mg. 1H NMR (300 MHz, DMSO-d6) d: 0.82 (s, 2H), 1.00–1.12
(m, 2H), 1.29 (s, 2H), 1.51–1.55 (t, J = 6.66 Hz, 3H), 1.63–1.65 (m,
1H), 2.16 (s, 6H), 2.28 (s, 6H), 2.77–2.85 (m, 6H), 2.96–3.11 (m,
2H), 3.89 (s, 1H), 4.12–4.24 (m, 2H), 4.57–4.65 (q, J = 7.65 Hz,
1H), 6.40 (s, 2H), 6.86–6.94 (m, 3H), 7.07 (s, 2H), 7.17 (s, 2H),
7.44 (s, 1H), 7.92–7.95 (d, J = 8.04 Hz, 1H), 8.19–8.22 (d,
J = 7.68 Hz, 1H), 8.33–8.36 (d, J = 7.98 Hz, 3H), 9.07 (s, 1H). 13C
NMR (75 MHz, DMSO-d6) d: 19.87, 19.96, 22.26, 23.82, 26.65,
28.75, 30.61, 31.36, 32.28, 51.29, 51.90, 52.22, 52.35, 114.86,
121.86, 125.99, 127.79, 134.05, 136.88, 138.31, 155.60, 156.75,
158.06, 158.47, 168.24, 170.00, 170.73, 173.04.
4.2.6. H-Dmt-D-Arg-2-Nal-Lys-NH2 (6)
58 mg. 1H NMR (300 MHz, DMSO-d6) d: 0.65 (s, 2H), 0.93–1.06
(m, 2H), 1.30–1.33 (d, J = 7.53 Hz, 2H), 1.52–1.67 (m, 4H), 2.14 (s,
6H), 2.74–2.18 (t, J = 7.71 Hz, 3H), 2.86–3.02 (m, 2H), 3.32 (s, 3H),
3.87 (s, 1H), 4.17–4.21 (t, J = 6.06 Hz, 2H), 4.66 (s, 1H), 6.36 (s,
2H), 7.10 (s, 4H), 7.27 (s, 1H), 7.41–7.49 (m, 4H), 7.71–7.84 (m,
6H), 8.13–8.15 (t, J = 3.57 Hz, 4H), 8.37–8.40 (d, J = 8.73 Hz, 1H),
9.00 (s, 1H). 13C NMR (75 MHz, DMSO-d6) d (ppm): 20.33, 22.79,
24.18, 27.18, 29.40, 31.21, 31.21, 31.92, 51.86, 52.83, 54.31,
115.32, 122.44, 125.80, 126.35, 127.66, 127.81, 128.09, 128.18,
132.20, 132.27, 135.84, 138.73, 156.03, 157.13, 158.44, 158.83,
170.57, 171.20, 173.80.
4.2.2. H-Dmt-D-Arg-Tmp-Lys-NH2 (2)
22.4 mg. 1H NMR (300 MHz, DMSO-d6)d: 0.77 (s, 2H), 1.02–1.08 (m,
2H), 1.26–1.34 (m, 5H), 1.50 (s, 1H), 2.16–2.23 (m, 13H), 2.59–2.65
(t, J = 7.80 Hz, 2H), 2.73–2.89 (m, 2H), 2.94–3.05 (m, 4H), 3.89–
3.92 (m, 2H), 4.23–4.26 (m, 1H), 4.35 (s, 1H), 6.42 (s, 2H), 6.74 (s,
2H), 7.04 (s, 2H), 7.17 (s, 2H), 7.27 (s, 1H), 7.44 (s, 1H), 7.78–7.81
(d, J = 7.89 Hz, 4H), 8.24–8.34 (m, 4H), 9.10 (s, 1H). 13C NMR
(75 MHz, DMSO-d6) d: 19.70, 19.87, 20.40, 21.73, 24.11, 26.43,
28.98, 30.38, 30.77, 31.64, 51.55, 52.31, 52.37, 52.82, 114.91,
122.04, 128.53, 130.56, 134.70, 136.73, 138.30, 155.58, 156.75,
170.48, 170.71, 173.63.
4.2.7. H-Dmt-D-Arg-Trp-Lys-NH2 (7)
99.9 mg. 1H NMR (500 MHz, DMSO-d6) d: 0.73–0.82 (m, 2H),
1.05–1.15 (m, 2H), 1.26–1.31 (m, 2H), 1.49–1.54 (m, 3H),
1.62–1.68 (m, 1H), 2.16 (s, 6H), 2.76–2.79 (m, 4H), 2.81–2.85 (dd,
J1 = 14.05 Hz, J2 = 4.85 Hz, 1H), 2.88–2.93 (dd, J1 = 14.65 Hz,
J2 = 9.45 Hz, 1H), 2.97–3.02 (t, J = 10.90 Hz, 1H), 3.15–3.18 (dd,
J1 = 14.50 Hz, J2 = 4.45 Hz, 1H), 3.90 (s, 1H), 4.15–4.24 (m, 2H),
4.51–4.55 (m, 1H), 6.39 (s, 2H), 6.94–6.97 (t, J = 7.50 Hz, 2H),
7.02–7.07 (dd, J1 = 14.15 Hz, J2 = 7.15 Hz, 3H), 7.11–7.12 (d,
J = 2.15 Hz, 2H), 7.30–7.32 (d, J = 8.10 Hz, 1H), 7.34–7.36 (m, 1H),
7.60–7.61 (d, J = 7.85 Hz, 1H), 7.78 (s, 3H), 7.91–7.93 (d,
J = 8.00 Hz, 1H), 8.19–8.21 (d, J = 7.75 Hz, 1H), 8.27–8.31 (m, 4H),
9.04 (s, 1H), 10.70 (s, 1H). 13C NMR (125 MHz, DMSO-d6) d:
19.85, 22.26, 23.87, 26.70, 27.83, 28.80, 30.61, 31.40, 51.29,
52.21, 52.32, 53.45, 109.80, 111.17, 114.86, 118.09, 118.39,
120.78, 121.84, 123.81, 127.81, 135.99, 138.30, 155.59, 156.69,
158.07, 158.32, 168.24, 170.11, 171.07, 173.37.
4.2.3. H-Dmt-D-Arg-Imp-Lys-NH2 (3)
151.8 mg. 1H NMR (500 MHz, DMSO-d6) d: 0.79–0.82 (m, 2H),
1.02–1.05 (m, 1H), 1.12–1.14 (dd, J1 = 6.55 Hz, J2 = 4.60 Hz, 7H),
1.27–1.33 (m, 2H), 1.51–1.57 (m, 3H), 1.65–1.70 (m, 1H), 2.16 (s,
6H), 2.29 (s, 3H), 2.76–2.85 (m, 7H), 2.98–3.03 (m, 1H), 3.13–
3.17 (dd, J1 = 14.10 Hz, J2 = 6.50 Hz, 1H), 3.88 (s, 1H), 4.18–4.23
(m, 2H), 4.51–4.56 (q, J = 7.00 Hz, 1H), 6.40 (s, 2H), 6.87–6.89 (d,
J = 6.45 Hz, 1H), 6.99–7.04 (m, 3H), 7.08 (s, 1H), 7.18 (s, 2H),
7.40–7.43 (t, J = 5.30 Hz, 1H), 7.80–7.82 (m, 4H), 8.22–8.24 (d,
J = 7.80 Hz, 1H), 8.31–8.35 (m, 4H), 9.05 (s, 1H). 13C NMR
(125 MHz, DMSO-d6) d: 19.84, 20.50, 22.19, 23.74, 23.86, 24.37,
26.67, 27.90, 28.69, 30.63, 30.99, 31.53, 51.29, 52.15, 52.39,
53.21, 114.86, 121.84, 122.77, 126.39, 127.44, 132.57, 136.77,
138.31, 155.59, 156.72, 157.85, 158.09, 158.34, 158.59, 168.31,
170.05, 170.49, 173.07.
4.3. Molecular dynamics studies
All calculations were performed using SYBYL version 7.0 (Tripos
Associates, St. Louis, MO). The Tripos force field was used for
energy calculations with a dielectric constant of 78. Phenylalanine
was taken from a fragment library and modified as needed to gen-
erate the desired amino acid derivatives. In all cases the N-terminal
amino group was acetylated and the C-terminal carboxylic acid
group was amidated. Molecular dynamics simulations were carried
4.2.4. H-Dmt-D-Arg-Emp-Lys-NH2 (4)
96.5 mg. 1H NMR (500 MHz, DMSO-d6) d: 0.84 (s, 2H), 1.02–1.10
(m, 4H), 1.15–1.18 (m, 1H), 1.25–1.30 (m, 2H), 1.50–1.54 (m, 3H),
1.64–1.68 (m, 1H), 2.16 (s, 6H), 2.29 (s, 3H), 2.61–2.69 (m, 2H),
2.74–2.77 (t, J = 7.10 Hz, 2H), 2.79–2.87 (m, 4H), 2.97–3.02 (m,
1H), 3.07–3.11 (q, J = 6.65 Hz, 1H), 3.87–3.88 (d, J = 5.60 Hz, 1H),
4.15–4.25 (m, 2H), 4.54–4.59 (q, J = 7.65 Hz, 1H), 6.39 (s, 2H),
6.89–6.91 (m, 2H), 6.93–6.98 (m, 1H), 7.06–7.07 (d, J = 6.20 Hz,
3H), 7.42 (s, 1H), 7.77 (s, 2H), 7.85–7.87 (d, J = 8.15 Hz, 2H),
8.19–8.20 (d, J = 7.65 Hz, 2H), 8.33–8.34 (d, J = 8.80 Hz, 3H), 9.04
c
out at 300 K for 1 ns. The barrier of rotation around the CbAC bond
of the amino acids Phe, Dmp, Emp, Imp, 1-Nal and 2-Nal was deter-
mined using the torsion driver subroutine of SYBYL, with v1 set at
ꢀ60°. The v2 bond was rotated by 5° increments and each struc-
ture was minimized. Calculations using the standard v1 values of