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J.-J. Xue et al. / European Journal of Medicinal Chemistry 80 (2014) 1e7
were dissolved in stock solutions of DMSO (concentrations of
DMSO during the initial rate measurements did not exceed 0.5%).
Using 180 mM NADH and 2 mM pyruvate, we initially evaluated the
percent inhibition of the compounds. We evaluated the apparent
Km0 values in the presence of inhibitors. From the values of Km0 so
obtained, Ki values for each single inhibitor were determined using
doubleereciprocal plots [33].
O). 1H NMR (CDCl3, 400 MHz, 25 ꢁC, TMS),
NeH); 7.65 (d, J ¼ 8.0 Hz, 2H; BzH); 7.48 (d, J ¼ 8.0 Hz, 2H; BzH);
5.89 (s, 1H; pyrrole-H); 4.65 (s, 2H; eCH2e); 2.32 (s, 3H; eCH3);
2.00 (s, 3H; eCH3).
d
¼ 9.54 (s, 1H; pyrrole,
4.9. Synthesis of (4-((bis(pyridin-2-ylmethyl)amino)methyl)
phenyl)(3,5-dimethyl-1H-pyrrol-2-yl) methanone (PPMdpa)
4.5. Cytotoxicity testing
Bis(pyridine-2-ylmethyl)amine (dpa, 600 mg, 3 mmol) was
dissolved in acetonitrile (20 mL) under nitrogen at room temper-
ature. KI (107 mg, 0.64 mmol) was added with stirring. PPM
(605.2 mg, 2.4 mmol) in 25 ml acetonitrile was added slowly from a
dropping funnel in 1 h. The reaction was stirred at 80 ꢁC for 8 h. The
solvent was removed in vacuum and residue was dissolved in
chloroform. The organic layer was washed with water (3 ꢃ 50 ml),
dried with sodium sulfate and concentrated to give oil liquid after
column chromatography on silica gel, dark yellow powder PPMdpa
was obtained. Yield: 650 mg (66%); elemental analysis calcd (%) for
The cytotoxicity assay was in one kind of HepG-2 cells. Cells
were cultured in RMPI 1640 medium containing 4.8 g/L of Hepes,
2.2 g/L NaHCO3 and supplemented ith penicillin/streptomycin
(1000 units/ml), and 10% calf serum. HepG-2 cells were cultured in
DMEM medium containing 10% fetal bovine serum. All cells were
grown at 37 ꢁC in a humidified atmosphere in the presence of 5%
CO2. HepG-2 cells were seeded at a density of 4 ꢃ 104 cells/mL into
sterile 96-well plates and grown in 5% CO2 at 37 ꢁC. Test compounds
were dissolved in DMSO and diluted with culture media. After 24 h,
compounds were added, treated for 48 h. Cell viability was deter-
mined by the 3-[4,5-dimethylthiazol-2-yl]-2,5-diphenpyltetra-
zolium bromide (MTT) assay by measuring the absorbance at
570 nm with ELISA reader. IC50 data are calculated by the software
provided by Nanjing University. All experiments were repeated at
least three times.
C
26H26N4O: C, 76.07; H, 6.38; N, 13.65. Found: C, 75.76; H, 6.15; N,
13.87. IR (KBr,
n
/cmꢀ1):
n
¼ 3251 (]NH), 1596 (C]O), 761 (CH,
pyridine). UVevis (MeOH/nm) (ε ꢃ 10ꢀ4/dm3 molꢀ1 cmꢀ1): 206
(ε ¼ 2.61), 248 (ε ¼ 1.90), 323 (ε ¼ 2.59). 1H NMR (CDCl3, 400 MHz,
25 ꢁC, TMS),
d
¼ 9.18 (s, 1H; pyrrole, NeH); 8.54 (d, J ¼ 4.8 Hz, 2H;
PyH); 7.70 (td, J ¼ 8.0 Hz, 1.6 Hz, 2H; BzH); 7.60 (t, J ¼ 8.0 Hz, 4H;
PyH); 7.51 (d, J ¼ 8.0 Hz, 2H; BzH); 7.17 (dd, 3J ¼ 6.8 Hz, 5.2 Hz, 2H;
PyH); 5.87 (d, J ¼ 2.4 Hz, 1H; pyrrole-H); 3.84 (s, 4H; CH2e); 3.77 (s,
2H; eCH2e); 2.3 (s, 3H; eCH3); 1.95 (s, 3H; eCH3). ES-MS(ESIþ,
MeOH): calcd for [C26H27N4O]þ: 411.15, found 411.36.
4.6. Western blot analysis on expression level of HIF-1
cells
a in HepG-2
Nuclear protein extracts were prepared from 100 mm dishes,
except for experiments performed on 60 mm gas permeable dishes
(Greiner Bio One, Frickenhausen, Germany), protein was isolated to
perform Western analysis on Mini-Proten Tetra System (Molecular
Devices, Bio-RAD). A monoclonal mouse antibody for human HIF-
4.10. Synthesis of [(PPMdpa)2Mn2(m-Cl)2Cl2]2 (Mn1)
MnCl2$4H2O (150 mg, 0.757 mmol) in ethanol (20 mL) was
mixed with PPMdpa (250 mg, 0.609 mmol). The mixture was
heated to 70 ꢁC for 2 h, and then it was cooled to room temperature.
Diethyl ether (20.0 mL) was added to precipitate the products. After
filtration, a light yellow solid was obtained. Yield: 251 mg (77%).
Elemental analysis calcd. (%) for C26H26N4OMnCl2: C, 58.21; H, 4.85;
1a (2015-1, Epitomics) and a monoclonal mouse GAPDH Antibody
(AP0063, Bioworld) were used. Horseradish peroxidase-conjugated
goat anti-rabbit IgG-HRP: (BS13278, Bioworld) was used as sec-
ondary antibodies. Image was performed using ChemiDoc
XRS þ System (Bio-RAD).
N, 10.45. Found: C, 58.03; H, 4.95; N, 10.83. IR (KBr,n
/cmꢀ1):
n
¼ 3239 (]NH), 1610 (C]O), 762 (CH, pyridine). UVevis(MeOH/
nm) (ε ꢃ 10ꢀ4/dm3 molꢀ1 cmꢀ1): 208 (ε ¼ 2.10), 257 (ε ¼ 1.43), 321
4.7. Chemicals and starting materials
(ε ¼ 1.57).
Bis(pyridine-2-ylmethyl)amine (dpa, purity 99%), Tris (tris(hy-
droxymethyl)amino-methane) (tris), LDH-A, NADH, pyruvate, 4-
(chloromethyl)benzoyl chloride and 4-dimethyl-1H-pyrrole were
purchased from SigmaeAldrich. All chemicals used for synthesis
were of reagent grade and used without further purification
(Sinopharm Chemical Reagent Co. Ltd., China). Water was purified
with a Millipore Milli-Q system. Column chromatography was
carried out using silica FCP (200e300 mesh).
4.11. Synthesis of [(PPMdpa)2Mn2(m-Ac)2(Ac)2] (Mn2)
A solution of PPMdpa (84.4 mg, 0.20 mmol) in acetonitrile
(10 mL) was mixed with MnAc2$6H2O (50 mg, 0.2 mmol), and then
the mixture was refluxed at 80 ꢁC for 2 h. After the solution was
cooled to room temperature, an excess amount of diethyl ether was
added, and the obtained yellow brown precipitate was dried under
vacuum. Yield: 99 mg (85%). elemental analysis calcd. (%) for
C
30H32N4O5Mn: C, 61.75; H, 5.49; N, 9.61. Found: C, 61.86; H, 5.45;
4.8. Synthesis of (4-(chloromethyl)phenyl)(3,5-dimethyl-1H-
pyrrol-2-yl)methanone (PPM)
N, 9.87. IR(KBr,
n
/cmꢀ1):
n
¼ 3264 (¼NH), 1606 (C]O), 765 (CH,
pyridine). UVevis(MeOH/nm) (ε ꢃ 10ꢀ4/dm3 molꢀ1 cmꢀ1): 206
(ε ¼ 2.02), 256 (ε ¼ 1.20), 321 (ε ¼ 1.33).
4-(Chloromethyl)benzoyl chloride (1.5 g, 7.9 mmol) and triethyl
amine (1.061 g, 10.51 mmol) were dissolved in dichloromethane
(40 mL) under nitrogen at 0 ꢁC, then 2,4-Dimethyl-1H-pyrrole
(523 mg, 25 mmol) was added. After that, the mixture was stirred
for 6 h at room temperature; the solution was washed with 1 M
NaCl (20 mL) solution, dried with sodium sulfate and concentrated
to give oil liquid. After column chromatography on silica gel, light
yellow powder 4-(Chloromethyl)phenyl)(3,5-dimethyl-1H-pyrrol-
2-yl)methanone was obtained. Yield: 668 mg (70%); elemental
analysis calcd (%) for C14H14ClNO: C, 67.88; H, 5.7; N, 5.65. Found: C,
Acknowledgments
Financial support from National Natural Science Foundation of
China (20971059, 21271090) and Coordination Chemistry State key
Laboratory Foundation of Nanjing University.
Appendix A. Supplementary data
Supplementary data related to this article can be found at http://
67.58; H, 5.32; N, 5.85; IR (KBr,
n
/cmꢀ1):
n
¼ 3230 (]NH), 1611 (C]